Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count CSGALNACT2 55454 hgsc.bcm.edu;ucsc.edu 37 10 43659372 43659372 + Nonsense_Mutation SNP C C T rs76607193 byFrequency TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 TAATCGTGGACGAGGACTAAA 0.408 5 39 PTEN 5728 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 89624301 89624301 + Missense_Mutation SNP G G T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 ACTTAGACTTGACCTGTATCC 0.458 38 31 OVCH1 341350 hgsc.bcm.edu;ucsc.edu 37 12 29642562 29642562 + Silent SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CCTGGCAGGCGTCCATTCCCC 0.493 5 11 TRHDE 29953 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 72893328 72893328 + Silent SNP C C T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 TGCTGCTGGACGGTTTGGCCA 0.458 35 56 WSCD2 9671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 108589925 108589925 + Missense_Mutation SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CAAGCTTGGCGACTACGGTGG 0.607 32 54 ADCY4 196883 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 24793338 24793338 + Missense_Mutation SNP C C T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CAGTCCTGGTCGTGTGGCCAC 0.622 19 47 PML 5371 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 74315324 74315324 + Missense_Mutation SNP C C A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CAGGATAGTGCCTTTGGCGCG 0.687 14 21 ASB7 140460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 101170214 101170214 + Nonsense_Mutation SNP C C T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 TGGAAGTAGTCGACCATGTTT 0.358 30 48 IFT140 9742 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 1568282 1568282 + Missense_Mutation SNP T T C TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CCGATGCGGATGGTGCTGTCC 0.602 20 42 DNAH3 55567 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 21049263 21049263 + Silent SNP C C T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 ACAGTTGTTCCGAGCACAGGC 0.547 17 33 AMFR 267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 56396893 56396893 + Silent SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GGGTCACGGGGTCAGAGGACG 0.567 31 17 MYH13 8735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 10223518 10223518 + Silent SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GGACTTGTTCGTCATCTATTT 0.388 7 12 RNASEH2A 10535 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 12920991 12920991 + Missense_Mutation SNP C C T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GCCCTCTACCCGGTGGTTAGT 0.582 35 115 CYP2S1 29785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 41703792 41703792 + Missense_Mutation SNP C C T rs148695011 TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CTGATCCAGGCGGAGGCCCGG 0.622 10 44 ZNF665 79788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 53668011 53668011 + Missense_Mutation SNP C C G TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 ACACTAAATGCTTTGCCGCAC 0.398 25 168 NLRP11 204801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 56321356 56321356 + Missense_Mutation SNP C C G TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GCCGTCAGGCCAGTCCTTGGC 0.498 45 74 ZNF683 257101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 26691676 26691676 + Missense_Mutation SNP T T C TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GTGAATTTCTTGTCATCGGTG 0.577 5 13 C8A 731 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 57378109 57378109 + Missense_Mutation SNP A A T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GCGGCACACAAGCCTGGGGCC 0.602 39 79 RPF1 80135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 84961976 84961976 + Missense_Mutation SNP C C T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 ACTTGGACCACGTTTTACCTT 0.328 34 44 FASLG 356 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 172628551 172628551 + Silent SNP C C A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 cgctgccaccCCTGAAGAAGA 0.617 11 20 OR2G6 391211 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 248685544 248685544 + Silent SNP C C T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 AGGCAGAACTCTTTGTGGCCA 0.473 29 72 AHCY 191 hgsc.bcm.edu;broad.mit.edu 37 20 32873405 32873405 + Silent SNP G G A rs139344907 byFrequency TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CCAGCAGGATGATGCGGCGCC 0.632 9 145 TRPM2 7226 hgsc.bcm.edu;ucsc.edu 37 21 45846577 45846577 + Missense_Mutation SNP C C T rs113563173 byFrequency TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CCCTTTTACACGGCAGAGAGG 0.602 21 133 TTC27 55622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 32858959 32858959 + Missense_Mutation SNP C C G TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GTTGATATTTCTACTTGGTGT 0.368 22 103 EPC2 26122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 149528637 149528637 + Silent SNP A A G TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GAATATCCACAGAACATGACC 0.383 18 24 SF3B1 23451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 198267364 198267364 + Missense_Mutation SNP T T A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 ACAATCTTAATACCAGTGTGT 0.408 13 72 IQCA1 79781 hgsc.bcm.edu;broad.mit.edu 37 2 237308067 237308067 + Missense_Mutation SNP T T C TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 TTTGTATGCGTTACATCCTTC 0.463 6 121 COL6A3 1293 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 238274357 238274357 + Missense_Mutation SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GCTGTCCGGCGAGGACTGTCT 0.552 36 56 GRK7 131890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 141497220 141497220 + Missense_Mutation SNP C C T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 AGAGCTGCAGCGGCGGCGGCG 0.682 18 48 KIAA0232 9778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 6865324 6865324 + Missense_Mutation SNP C C T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 AGTTTTAAACCGAAATCAATC 0.418 38 109 GABRA4 2557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 46995377 46995377 + Missense_Mutation SNP C C T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GCACAGGAAGCGCAGGAGGGC 0.592 61 100 KDR 3791 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 55961110 55961110 + Nonsense_Mutation SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 TGACGGAATCGTGCCCCTTTG 0.433 34 64 GZMK 3003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 54329739 54329739 + Silent SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 ACCTTGTCCCGCCTCATACAA 0.408 18 57 GPR98 84059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 89954001 89954001 + Missense_Mutation SNP G G C TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GGAGGAGCTCGTATTTCGGAA 0.348 38 85 FAT2 2196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 150924339 150924339 + Nonsense_Mutation SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GGGTCAATTCGGAAATATGTG 0.428 62 144 EBF1 1879 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 158158158 158158158 + Silent SNP G G A rs146276323 TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 TGGTGGGTTCGTTGAGCGCTG 0.448 10 33 TLX3 30012 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 170738554 170738554 + Missense_Mutation SNP C C A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 AATCTGCAGCCCTGGGAGGAG 0.637 13 17 NMBR 4829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 142397176 142397176 + Missense_Mutation SNP C C T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CAGGCGTTTCCGTGTTTCCAT 0.378 24 50 EGFR 1956 hgsc.bcm.edu;broad.mit.edu 37 7 55241722 55241722 + Missense_Mutation SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CGGTGCGTTCGGCACGGTGTA 0.562 126 1990 RP1 6101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 55534023 55534023 + Missense_Mutation SNP C C T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GACCCGAAGACGAGGCGTGCG 0.642 49 108 PARP10 84875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 145057683 145057683 + Missense_Mutation SNP G G A rs146697146 byFrequency TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GCCTCCAACGGGGGCTGCTCC 0.677 6 23 AKAP17A 8227 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 1720261 1720261 + Missense_Mutation SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CGCAAGGAGCGGCGGCCCCAC 0.731 4 18 APEX2 27301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 55033742 55033742 + Silent SNP G G T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 AGCCATGTGTGATGCGTACTG 0.622 21 40 ZMYM3 9203 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 70464671 70464671 + Missense_Mutation SNP G G C TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GTCTTGTTCAGTAGACACATC 0.478 8 30 RPS4X 6191 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 71493768 71493768 + Missense_Mutation SNP G G T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 TGAGTCACCAGATGAGGGATT 0.438 24 55 CYLC1 1538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 83129576 83129576 + Missense_Mutation SNP G G T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CATCACCAAAGGTCAGACGTC 0.433 35 53 CPXCR1 53336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 88009269 88009269 + Missense_Mutation SNP T T A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GGAAGGCTTTTTAACACTTAC 0.303 30 47 NKRF 55922 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 118724016 118724016 + Missense_Mutation SNP T T C TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 AACTGAGCTGTGTCGTTCAGC 0.428 52 140 BCORL1 63035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 129147463 129147463 + Missense_Mutation SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GCTTGTTCCAGTCCAAGTTGC 0.637 92 185 SLC25A14 9016 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 129498601 129498601 + Splice_Site SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GTGTTTCGTAGGGTGTGGTTC 0.408 41 99 IGSF1 3547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 130415782 130415782 + Missense_Mutation SNP T T G TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CTGAGAATTTTTGGAATGTTT 0.453 41 53 SPEF2 79925 broad.mit.edu;ucsc.edu 37 5 35646854 35646854 + Missense_Mutation SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GCATCAAATCGTACTTTGAAA 0.333 41 83 THSD7B 80731 broad.mit.edu;ucsc.edu 37 2 138378230 138378230 + Missense_Mutation SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GGTGGAATGCGTGGTCAACTG 0.468 63 114 MKNK2 2872 broad.mit.edu;ucsc.edu 37 19 2043519 2043519 + Silent SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CCTGGCACTGGTACAGCATCT 0.587 20 62 CYP1A2 1544 broad.mit.edu;ucsc.edu 37 15 75042332 75042332 + Missense_Mutation SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CTCCACGCCCGTGCTGGTGCT 0.667 30 58 LRP2 4036 broad.mit.edu;ucsc.edu 37 2 170038807 170038807 + Missense_Mutation SNP G G A rs144973875 TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CCATCCAGGCGGGCATCCAAC 0.502 29 108 MUC6 4588 broad.mit.edu;ucsc.edu 37 11 1026378 1026378 + Missense_Mutation SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GGAGACCCCCGAGAACTCACA 0.652 17 24 IGSF1 3547 broad.mit.edu;ucsc.edu 37 X 130413285 130413285 + Silent SNP C C T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GCATGGTGACCCCTTGAGCTG 0.617 27 58 ADAMTS12 81792 broad.mit.edu;ucsc.edu 37 5 33683148 33683148 + Missense_Mutation SNP C C T rs61754760 TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 TAGAATGAGCCGAACCACAAC 0.433 21 53 FAM71B 153745 broad.mit.edu;ucsc.edu 37 5 156590151 156590151 + Silent SNP C C T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 TGCCTGCAAACGCCGCACTCA 0.582 22 55 LNX1 84708 broad.mit.edu;ucsc.edu 37 4 54327127 54327127 + Missense_Mutation SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CTTCCTTTAAGTTCTTTCAGC 0.343 33 54 AC005307.3 0 broad.mit.edu;ucsc.edu 37 19 29215151 29215151 + RNA SNP G G A rs151046529 by1000genomes TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CAGACTGTCCGCCATCCAGAT 0.443 10 41 CACNA2D4 93589 broad.mit.edu;ucsc.edu 37 12 1995491 1995491 + Silent SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 TGCCGCTCACGTCCACCAAAA 0.488 29 42 ATP1A2 477 broad.mit.edu;ucsc.edu 37 1 160099056 160099056 + Splice_Site SNP C C T TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CTTCTGGCAGCGGGACACAGC 0.557 87 173 RIPK4 54101 broad.mit.edu;ucsc.edu 37 21 43161012 43161012 + Nonsense_Mutation SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 GTCTTGCTTCGCCGCAGGAGC 0.672 17 42 EGFR 1956 broad.mit.edu 37 7 55260473 55260473 + Nonsense_Mutation SNP G G A TCGA-HT-8104-01A-11D-2395-08 TCGA-HT-8104-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42c28a52-8073-48ea-9d4b-48ecea6c5c22 e3c0bcc6-7cb4-47f8-ade2-ac60e960ca09 CTATCAAGTGGATGGCATTGG 0.433 44 1857