Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OGDHL 55753 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 50953529 50953529 + Missense_Mutation SNP C C T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 GTGGCCACGCCGGCGGTAACA 0.572 28 80 ADK 132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 76360239 76360239 + Missense_Mutation SNP A A G TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 AGATGACACTATAATGGCTAC 0.348 9 34 FFAR4 338557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 95326548 95326548 + Missense_Mutation SNP G G T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 AACCGCACCCGCTTTCCCTTC 0.701 6 41 LOXL4 84171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 100013489 100013489 + Silent SNP C C T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 GCTGGCTGAGCGGGCGGTCCT 0.627 25 52 ADRBK1 156 hgsc.bcm.edu;broad.mit.edu 37 11 67046685 67046685 + Missense_Mutation SNP C C G TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 CCTGCTCTTCCGAGACTTCTG 0.592 6 77 TAPBPL 55080 hgsc.bcm.edu;broad.mit.edu 37 12 6567822 6567822 + Missense_Mutation SNP G G A TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 TTCCCCTAAAGTACGACTGAG 0.522 12 156 ATF7IP 55729 hgsc.bcm.edu;broad.mit.edu 37 12 14634097 14634097 + Silent SNP T T C TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 CTCCTGCTGTTCGGCAGGTCA 0.453 8 139 FLT3 2322 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 28609684 28609684 + Silent SNP A A G TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 AATTGTATGCACAGCACTTGA 0.438 18 163 FLT3 2322 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 28611413 28611413 + Silent SNP A A G TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 TATGATTGCAAAACTTGGATA 0.378 10 79 SDR39U1 56948 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 24909494 24909494 + Missense_Mutation SNP G G T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 GGCAAACTCAGCATTAGTGGC 0.617 21 39 DUOX2 50506 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 45398797 45398797 + Missense_Mutation SNP C C T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 CTTGTGTTCTCGGCCCCGGAA 0.557 33 176 HERC1 8925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 63972937 63972937 + Silent SNP C C T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 CTCCAACACACGTGCCTTCAT 0.373 25 194 MYO9A 4649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 72190411 72190411 + Nonsense_Mutation SNP A A T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 CTCTGTATTCAAAGAAGGAAC 0.393 11 123 GDPD1 284161 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 57348316 57348316 + Missense_Mutation SNP A A G TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 ACCACACACCATGTCCAGAAG 0.279 37 92 SMARCD2 6603 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 61911645 61911645 + Missense_Mutation SNP C C T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 CGTGTGCACTCCCAGCAGCCT 0.567 7 25 SMARCA4 6597 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 11135091 11135091 + Missense_Mutation SNP G G T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 GCTGCTGACTGATGGCTCCGA 0.627 18 37 ZNF490 57474 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 12692359 12692359 + Missense_Mutation SNP G G A TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 TTCAGTGTGAGATCTCATGTG 0.443 72 138 IL27RA 9466 hgsc.bcm.edu;broad.mit.edu 37 19 14157294 14157294 + Silent SNP G G A TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 CTGGGAGCACGGAGCTACTGG 0.627 15 216 ZNF681 148213 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 23927189 23927189 + Missense_Mutation SNP T T C rs145416258 byFrequency TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 CTCTCCAGTATGAATTATCTT 0.398 30 62 THEMIS2 9473 hgsc.bcm.edu;broad.mit.edu 37 1 28209255 28209255 + Missense_Mutation SNP G G A TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 CTCCTTCCTGGGCCTGCGGCT 0.602 6 91 KCNA10 3744 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 111060317 111060317 + Missense_Mutation SNP C C T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 AGTGTTTGCCCGAGGATCTGC 0.557 76 62 DUSP27 92235 hgsc.bcm.edu;broad.mit.edu 37 1 167096396 167096396 + Silent SNP G G A TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 GGGACACGACGTCAGTACTGA 0.637 5 49 PRG4 10216 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 186276487 186276487 + Missense_Mutation SNP C C T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 CAAGTCTGCACCCACCACTCC 0.642 49 104 OR13G1 441933 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 247835570 247835570 + Silent SNP G G T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 TGGAAGCAGGGCGGATATAGG 0.463 29 157 HELZ2 85441 hgsc.bcm.edu;ucsc.edu 37 20 62194934 62194934 + Silent SNP C C T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 AGCCCGCCTCCACGTCCACCA 0.711 4 10 FBLN7 129804 hgsc.bcm.edu;broad.mit.edu 37 2 112944825 112944825 + Silent SNP C C T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 CCATCACGCTCTTCCGCATGG 0.647 17 190 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 ATAAGCATGACGACCTATGAT 0.393 31 81 ASIC5 51802 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 156764859 156764859 + Missense_Mutation SNP C C T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 GTTACCCTTGCGTGCATTCCC 0.448 35 120 DNAH5 1767 hgsc.bcm.edu;broad.mit.edu 37 5 13919350 13919350 + Silent SNP A A G TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 GGGCTTTTCAATTGTTCCAAA 0.507 29 234 ATP6AP1L 92270 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 81608458 81608458 + Missense_Mutation SNP T T G TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 CAACAAGTTGTCCATCCAGAG 0.413 17 221 HTR4 3360 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 147889456 147889456 + Nonsense_Mutation SNP G G T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 CATAGATGCGGTAATAGGCCA 0.542 23 41 TENM2 57451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 167674102 167674102 + Missense_Mutation SNP A A G TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 AAGATGGTCAACCTCCAAAGT 0.522 65 126 FAM83B 222584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 54735129 54735129 + Nonsense_Mutation SNP C C T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 GGAATGGTATCGAGTAGCCAT 0.403 63 148 TACC1 6867 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 38678119 38678119 + Missense_Mutation SNP G G C TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 TGAAATCTTAGAATCACCCAA 0.453 107 236 KIF24 347240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 34257924 34257924 + Missense_Mutation SNP G G A rs144983593 TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 CCAGATGTCCGATTTCGACTG 0.398 126 62 FAM120A 23196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 96324505 96324505 + Silent SNP T T A TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 CAAGAGGAGTTATTTCCACCC 0.368 18 51 GBGT1 26301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 136029281 136029281 + Missense_Mutation SNP G G A TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 ACACGCCTGCGCTCATAGGGG 0.602 47 106 DDIT3 1649 broad.mit.edu;ucsc.edu 37 12 57911132 57911132 + Missense_Mutation SNP C C T TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 TCATACCAGGCTTCCAGCTCC 0.493 21 39 ZNF271 10778 broad.mit.edu;ucsc.edu 37 18 32887852 32887852 + RNA SNP G G A TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 GAATGCTGTTGATTATTGATG 0.373 15 31 ARID4B 51742 broad.mit.edu;hgsc.bcm.edu 37 1 235345238 235345244 + Frame_Shift_Del DEL TCTTCAA TCTTCAA - TCGA-HT-8109-01A-11D-2395-08 TCGA-HT-8109-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61523043-c989-4ebc-8d20-80f1c578aa38 a2939a7a-eec5-4cf0-821a-f0bb89ad36e7 TACTGTTTTTTCTTCAATGGGTTTACT 0.444 53 82