Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ROM1	6094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	62380964	62380964	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8114-01A-11D-2395-08	TCGA-HT-8114-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	787f4a0b-50dc-4321-be34-b6d5943d51bc	09e948c9-68d4-4b69-ad2d-ac1438f1e3b0	GGCAGCGGGCGCGGTGGCTCT	0.667	5	30
SRPR	6734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	126134414	126134414	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8114-01A-11D-2395-08	TCGA-HT-8114-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	787f4a0b-50dc-4321-be34-b6d5943d51bc	09e948c9-68d4-4b69-ad2d-ac1438f1e3b0	ACCAGCACCACGTCAAAGCCT	0.507	8	61
GAS6	2621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	114531664	114531664	+	Silent	SNP	C	C	T			TCGA-HT-8114-01A-11D-2395-08	TCGA-HT-8114-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	787f4a0b-50dc-4321-be34-b6d5943d51bc	09e948c9-68d4-4b69-ad2d-ac1438f1e3b0	CCAGATTCCGCGCCAGCTCCT	0.537	13	78
ZC3H14	79882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	89044401	89044401	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8114-01A-11D-2395-08	TCGA-HT-8114-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	787f4a0b-50dc-4321-be34-b6d5943d51bc	09e948c9-68d4-4b69-ad2d-ac1438f1e3b0	GCAGAAGTGGTCCAGGGACAA	0.388	28	75
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578291	7578291	+	Splice_Site	SNP	T	T	C			TCGA-HT-8114-01A-11D-2395-08	TCGA-HT-8114-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	787f4a0b-50dc-4321-be34-b6d5943d51bc	09e948c9-68d4-4b69-ad2d-ac1438f1e3b0	GGGCCAGACCTAAGAGCAATC	0.552	29	16
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578394	7578394	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8114-01A-11D-2395-08	TCGA-HT-8114-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	787f4a0b-50dc-4321-be34-b6d5943d51bc	09e948c9-68d4-4b69-ad2d-ac1438f1e3b0	GCAGCGCTCATGGTGGGGGCA	0.642	10	61
ZNF235	9310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	44793178	44793178	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8114-01A-11D-2395-08	TCGA-HT-8114-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	787f4a0b-50dc-4321-be34-b6d5943d51bc	09e948c9-68d4-4b69-ad2d-ac1438f1e3b0	GGGGGAATCATGGTGCTTGGG	0.438	10	126
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	35183494	35183494	+	Silent	SNP	G	G	A			TCGA-HT-8114-01A-11D-2395-08	TCGA-HT-8114-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	787f4a0b-50dc-4321-be34-b6d5943d51bc	09e948c9-68d4-4b69-ad2d-ac1438f1e3b0	AGCCCTCCACGACCCCTAATA	0.547	10	113
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-8114-01A-11D-2395-08	TCGA-HT-8114-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	787f4a0b-50dc-4321-be34-b6d5943d51bc	09e948c9-68d4-4b69-ad2d-ac1438f1e3b0	ATAAGCATGACGACCTATGAT	0.393	46	50
PCDH12	51294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	141325159	141325159	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-8114-01A-11D-2395-08	TCGA-HT-8114-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	787f4a0b-50dc-4321-be34-b6d5943d51bc	09e948c9-68d4-4b69-ad2d-ac1438f1e3b0	CCAGCAGTGAGCTCATCTCCG	0.662	5	46
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	150932869	150932869	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8114-01A-11D-2395-08	TCGA-HT-8114-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	787f4a0b-50dc-4321-be34-b6d5943d51bc	09e948c9-68d4-4b69-ad2d-ac1438f1e3b0	GATGGAGGACGGCCGGGGCCA	0.582	23	57
ATAD2	29028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	124351613	124351613	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8114-01A-11D-2395-08	TCGA-HT-8114-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	787f4a0b-50dc-4321-be34-b6d5943d51bc	09e948c9-68d4-4b69-ad2d-ac1438f1e3b0	TTCAAAAAATTTTGTCCGTTC	0.274	11	24
HDX	139324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	83724060	83724060	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-8114-01A-11D-2395-08	TCGA-HT-8114-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	787f4a0b-50dc-4321-be34-b6d5943d51bc	09e948c9-68d4-4b69-ad2d-ac1438f1e3b0	AATCCCAACTGGTTCAATTTT	0.413	10	86
RP11-248G5.8	0	broad.mit.edu;ucsc.edu	37	13	52865661	52865661	+	RNA	SNP	C	C	A			TCGA-HT-8114-01A-11D-2395-08	TCGA-HT-8114-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	787f4a0b-50dc-4321-be34-b6d5943d51bc	09e948c9-68d4-4b69-ad2d-ac1438f1e3b0	AAGGATGACACAATTGAATGA	0.289	4	17
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76937602	76937603	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HT-8114-01A-11D-2395-08	TCGA-HT-8114-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	787f4a0b-50dc-4321-be34-b6d5943d51bc	09e948c9-68d4-4b69-ad2d-ac1438f1e3b0	TTTATCTCTTATTTTTTTACTT	0.327	36	46
ATRX	546	broad.mit.edu	37	X	76938089	76938092	+	Frame_Shift_Del	DEL	TCTC	TCTC	-	rs141180098		TCGA-HT-8114-01A-11D-2395-08	TCGA-HT-8114-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	787f4a0b-50dc-4321-be34-b6d5943d51bc	09e948c9-68d4-4b69-ad2d-ac1438f1e3b0	GAAGAGAAAGTCTCTCTCTCTTGT	0.412	25	208