Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count BTAF1 9044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 93749186 93749186 + Missense_Mutation SNP A A G TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 CTCAGTGCATAGCTAAACTCC 0.388 30 47 DCHS1 8642 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 6654108 6654108 + Missense_Mutation SNP G G A rs139750490 TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 ACACGCACCCGAGCTACAGCG 0.597 7 41 IGSF22 283284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 18739488 18739488 + Silent SNP G G A TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 CCAGCACTGTGAGCTCTGCAC 0.542 16 84 STRAP 11171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 16050900 16050900 + Silent SNP C C T TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 TTGTTGCAGGCGGTGAAGATT 0.343 19 42 CTCF 10664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 67663410 67663410 + Missense_Mutation SNP C C G TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 AAGATGCGCTCTAAGAAAGAA 0.448 8 59 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 GCACAAACACGCACCTCAAAG 0.542 24 7 KRI1 65095 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 10670353 10670353 + Missense_Mutation SNP G G A TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 ACGGCGCACGGAGGACGCGAT 0.622 14 52 NLRP8 126205 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 56459540 56459540 + Missense_Mutation SNP G G A rs149738419 TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 TTGATAGAGCGTTTCCCTGGA 0.512 14 29 PLEKHO1 51177 hgsc.bcm.edu;broad.mit.edu 37 1 150131105 150131105 + Missense_Mutation SNP G G A TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 TGTGCTGAGAGCTTTCGGGTT 0.617 7 95 SCTR 6344 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 120197767 120197767 + Missense_Mutation SNP C C T TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 CTGAAGGAGGCCACGGGGTGC 0.637 12 29 PLEKHM3 389072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 208866024 208866024 + Missense_Mutation SNP C C T TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 AAGGTTGATGCTTCCTTTTGT 0.453 18 94 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 ATAAGCATGACGACCTATGAT 0.393 14 35 LHFPL4 375323 hgsc.bcm.edu;broad.mit.edu 37 3 9594261 9594261 + Missense_Mutation SNP T T C TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 ACGTTGATGATGGCGAAGCAG 0.632 5 74 ADPRH 141 hgsc.bcm.edu;broad.mit.edu 37 3 119305222 119305222 + Missense_Mutation SNP G G A TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 GGCGGCTGTGGGGCTGCCATG 0.612 9 159 TFRC 7037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 195803944 195803944 + Missense_Mutation SNP G G C TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 CCAAGTTAGAGAATGCTGATC 0.343 16 44 HARS 3035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140070858 140070858 + Missense_Mutation SNP A A T TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 CTGAAGTTTCACCAGCTCCTC 0.652 12 35 PRSS35 167681 hgsc.bcm.edu;broad.mit.edu 37 6 84233254 84233254 + Nonsense_Mutation SNP A A T TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 GTGGCACTTGAGAAAGGTACC 0.448 10 113 FBXO30 84085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 146126348 146126348 + Silent SNP A A G TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 CCTTTGGTTTAGACCAACATG 0.388 51 91 TRHR 7201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 110100140 110100140 + Silent SNP C C G TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 CCATCAAAGCCCAGTTTCTCT 0.413 22 34 RORB 6096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 77277523 77277523 + Splice_Site SNP G G T TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 CTGAAGTCAGGTAAGCAAGAA 0.458 15 80 DMD 1756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 31747794 31747794 + Silent SNP T T C TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 TGGTCTTGTTTTTCAAATTTT 0.413 48 91 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76937081 76937081 + Nonsense_Mutation SNP C C A TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 ATTTTCTGTTCATCGCTGCTT 0.343 18 60 NUCB1 4924 broad.mit.edu;ucsc.edu 37 19 49422370 49422370 + Silent SNP G G T TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 GGGAGCATGTGATGAAGAATG 0.622 4 42 PRSS3P2 154754 broad.mit.edu;ucsc.edu 37 7 142480060 142480060 + RNA SNP C C T TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 CAGGTCACTGCTACAAGCCGT 0.567 23 104 SKIV2L2 23517 broad.mit.edu;ucsc.edu 37 5 54720585 54720585 + Silent SNP C C T TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 TGTTTGCTGCCAGCCTCTACT 0.378 4 41 TERT 7015 broad.mit.edu;ucsc.edu 37 5 1264587 1264587 + Silent SNP G G A rs34528119 TCGA-HT-A5R5-01A-11D-A289-08 TCGA-HT-A5R5-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0686504d-9d1a-470d-bb1a-14fef0939d3f c54b6c79-a24e-418f-a5f3-5bda53aebf79 GGAATAGGCCGTGGGCCGGCA 0.627 20 44