Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count SERPINH1 871 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 75277978 75277978 + Missense_Mutation SNP C C T TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 GTGGAGCGCACGGACGGCGCC 0.662 29 97 IPO4 79711 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 24651580 24651580 + Silent SNP G G A TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 CCTCTCCAGCGTGCTCCAGCA 0.622 17 32 BCL11B 64919 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 99641424 99641424 + Silent SNP C C T TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 GCGCCTTggccgcgccgcccc 0.731 28 29 PML 5371 hgsc.bcm.edu;broad.mit.edu 37 15 74290533 74290533 + Silent SNP C C T TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 CCCTGGATAACGTCTTTTTCG 0.642 5 84 IDH2 3418 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 90631839 90631839 + Missense_Mutation SNP T T C TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 TGGGCGTGCCTGCCAATGGTG 0.627 41 58 RBFOX1 54715 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 7568267 7568267 + Missense_Mutation SNP C C T TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 CCCCACCCCGCGCCAGAGTAC 0.657 118 174 MYO15A 51168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 18053797 18053797 + Missense_Mutation SNP G G A TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 AGGCCAGCCCGGTGGAGGCAG 0.617 36 77 KCNH4 23415 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 40322247 40322247 + Missense_Mutation SNP C C T TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 GTAGGCGCTGCGCCGTGATGG 0.622 22 39 SP6 80320 hgsc.bcm.edu;broad.mit.edu 37 17 45925200 45925200 + Missense_Mutation SNP G G A TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 CAGCCCTTGAGACTCCGGGGC 0.716 11 15 CTIF 9811 hgsc.bcm.edu;broad.mit.edu 37 18 46284511 46284511 + Missense_Mutation SNP G G A TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 GGCGCACACCGCAATGCCAAA 0.642 5 86 MYO5B 4645 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 47566657 47566657 + Missense_Mutation SNP G G A TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 AGCTGGTTGCGTTGTACATCA 0.423 128 257 SOCS6 9306 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 67993430 67993430 + Missense_Mutation SNP G G A TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 TTTGTTATACGTCAGTATACC 0.468 35 51 TRMT1 55621 hgsc.bcm.edu;broad.mit.edu 37 19 13220750 13220750 + Missense_Mutation SNP G G A TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 GACTCCTGACGCTTTGCCGAG 0.652 10 187 NOTCH3 4854 hgsc.bcm.edu;broad.mit.edu 37 19 15271838 15271838 + Missense_Mutation SNP G G A TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 GGGGAGACGGGGGTCCCTGGG 0.741 8 6 NWD1 284434 hgsc.bcm.edu;broad.mit.edu 37 19 16860910 16860910 + Missense_Mutation SNP C C T TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 CTCCTGGACCCGGAGGCCTAC 0.647 8 135 UPF1 5976 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 18968249 18968249 + Missense_Mutation SNP C C T TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 CCGGCCCATCCGCCTGCAGGT 0.642 43 58 NLRP7 199713 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 55451739 55451739 + Missense_Mutation SNP C C T TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 CTCAGAGTGACGTCGTCATGG 0.498 153 74 OR6K2 81448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 158669721 158669721 + Missense_Mutation SNP G G A TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 AGAGACACACGTGGAAAATGC 0.463 40 47 NOS1AP 9722 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 162313698 162313698 + Missense_Mutation SNP C C T TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 CTGCAGCACACGCAGCAGAAT 0.582 49 78 SUCO 51430 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 172558108 172558108 + Missense_Mutation SNP A A G TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 ACTGACCACAATTTGTTGTAT 0.413 18 28 KDM5B 10765 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 202705465 202705465 + Missense_Mutation SNP C C T TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 GGGGATAGATCGGCCTCGTGT 0.428 11 69 MAPKAPK2 9261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 206904037 206904037 + Silent SNP A A C TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 TTGCAGCTCCAGAAGTGCTGG 0.552 30 58 TRPM2 7226 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 45774548 45774548 + Silent SNP G G A TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 GCCTCAGTTCGTGGATTCCTG 0.458 12 108 GIGYF2 26058 hgsc.bcm.edu;broad.mit.edu 37 2 233714984 233714984 + Missense_Mutation SNP G G A TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 CTCTGTGTGGGGGATGAACCA 0.433 6 106 TAMM41 132001 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 11887995 11887995 + Missense_Mutation SNP C C T TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 TGAACTCGGCCCTGCCTGGCG 0.622 52 90 GPR128 84873 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 100373800 100373800 + Missense_Mutation SNP G G A TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 GACAAGTGATGGTGACATCAA 0.408 60 80 ACPP 55 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 132086622 132086622 + Missense_Mutation SNP C C T TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 TATCCACATTCGCCGTGGACT 0.463 90 242 IQCJ-SCHIP1 100505385 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 159482639 159482639 + Silent SNP C C A TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 AGCACGACCCCCAGGACCTCA 0.756 8 11 DDX4 54514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 55075828 55075828 + Missense_Mutation SNP C C T rs137993034 TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 GCTTCAGGGCCATACAGAAGA 0.413 11 40 NPY 4852 hgsc.bcm.edu;broad.mit.edu 37 7 24324984 24324984 + Missense_Mutation SNP C C T TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 GACGCACCAGCGGAGGACATG 0.682 7 96 HDHD3 81932 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 116136465 116136465 + Missense_Mutation SNP C C T TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 GAAGCTGTGGCTCTGAGCCCT 0.657 26 38 PASD1 139135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 150793999 150793999 + Missense_Mutation SNP T T C TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 GTGGGAGAGCTCAGGTGAGAG 0.333 85 267 BAG4 9530 broad.mit.edu;ucsc.edu 37 8 38065246 38065246 + Missense_Mutation SNP C C G rs150045830 byFrequency TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 TGAAGCACCCCCTCTTAGGGG 0.488 27 38 REV1 51455 broad.mit.edu;hgsc.bcm.edu 37 2 100055074 100055076 + In_Frame_Del DEL ACA ACA - TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 TGTGTCAGTTACAACAAGTGCAG 0.335 26 48 RBPJ 3516 broad.mit.edu;hgsc.bcm.edu 37 4 26426014 26426017 + Frame_Shift_Del DEL CAGA CAGA - TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 ACTACGATCCCAGACAGTTAGTAC 0.422 41 31 TCF7L2 6934 broad.mit.edu;hgsc.bcm.edu 37 10 114911515 114911517 + In_Frame_Del DEL AAG AAG - TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 GGAAGAAGAAAAGAAGAAGCCCC 0.443 19 55 FKBP3 2287 broad.mit.edu;hgsc.bcm.edu 37 14 45590142 45590144 + In_Frame_Del DEL TTC TTC - TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 CTTGGCATTTTTCTTCTTCTTTG 0.32 23 56 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42799067 42799069 + In_Frame_Del DEL GAT GAT - TCGA-HT-A5R9-01A-11D-A289-08 TCGA-HT-A5R9-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 10708a85-0155-45b3-9652-24c348b68882 a6d0ae7b-eb25-48c6-a048-ecf0d30b9059 TGCGCCAGAAGATCATGCAGGCT 0.65 44 36