Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count HK1 3098 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 71160766 71160766 + Nonsense_Mutation SNP C C T TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 AATCATGCACCAGACGGTGAA 0.552 23 52 AMBRA1 55626 hgsc.bcm.edu;broad.mit.edu 37 11 46431879 46431879 + Silent SNP C C G TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 CCGTCTCGTTCAGCTGGTCCC 0.532 7 111 FNBP4 23360 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 47753113 47753113 + Splice_Site SNP C C T TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 GTCTATGATCCCTAAATTACA 0.438 24 35 ARNTL2 56938 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 27553705 27553705 + Missense_Mutation SNP A A T TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 ATGTAGATCAAAGGTAAACAT 0.323 21 20 AKAP13 11214 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 86076938 86076938 + Missense_Mutation SNP T T C TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 GCAGCTCAATTCCTAGCAACC 0.493 42 48 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577120 7577120 + Missense_Mutation SNP C C A rs28934576 by1000genomes TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 GGCACAAACACGCACCTCAAA 0.542 19 7 MYH4 4622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 10370011 10370011 + Nonsense_Mutation SNP G G A TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 TCAGACTTTCGGAGGAAAGGA 0.478 16 87 PIGS 94005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 26890508 26890508 + Missense_Mutation SNP G G T TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 CCCTCCGCTTGTTCCTGAGGC 0.527 22 37 SMARCA4 6597 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 11095998 11095998 + Missense_Mutation SNP A A G TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 CCGCGCTACAACCAGATGAAA 0.632 16 40 RAVER2 55225 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 65268729 65268729 + Missense_Mutation SNP G G T TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 TTTTACATTTGAATAAAGCAC 0.323 11 67 SLC35D1 23169 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 67517761 67517761 + Splice_Site SNP G G A TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 TAGTGGAAACGTCTAGAAAAT 0.299 26 38 UBE2G2 7327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 46207992 46207992 + Missense_Mutation SNP G G A TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 AATTCCTTCCGGAGGATTCAG 0.269 12 22 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 21230419 21230419 + Silent SNP G G A rs72653101 TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 TAATGTTCTCGTTGTTTCCAG 0.403 33 47 WDR54 84058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 74652340 74652340 + Silent SNP G G A TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 TCTGCGCCCTGGACCTGGCTT 0.527 36 70 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 ATAAGCATGACGACCTATGAT 0.393 10 26 CCDC149 91050 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 24875312 24875312 + Silent SNP T T C TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 CCTGTTTCCTTTTTTCAGGAG 0.343 8 10 ADH7 131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 100349018 100349018 + Missense_Mutation SNP T T A TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 ATCATCAATCTTAGCAACAGA 0.463 8 51 DCHS2 54798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 155241554 155241554 + Missense_Mutation SNP G G A TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 TAGCATAAACGTCATGTTTTC 0.408 23 51 SLC6A18 348932 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 1243683 1243683 + Missense_Mutation SNP C C T TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 GCCTCGGGCCCGGGCCTGGCC 0.647 9 37 RNF145 153830 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 158601111 158601111 + Missense_Mutation SNP A A C TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 AACAGGGACTACCAGTTGATT 0.433 7 18 PPP6C 5537 hgsc.bcm.edu;broad.mit.edu 37 9 127933438 127933438 + Missense_Mutation SNP C C T TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 AAGAGGAGGTCACAAACGTAG 0.328 33 52 FAAH2 158584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 57358192 57358192 + Nonsense_Mutation SNP C C T TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 GATCTATGGCCGATCAAACAA 0.403 44 13 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76938920 76938920 + Nonsense_Mutation SNP G G A TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 TCTTTATCTTGTGGAACTTCC 0.358 114 43 KLK15 55554 broad.mit.edu;ucsc.edu 37 19 51330985 51330985 + Missense_Mutation SNP G G A rs140896741 byFrequency TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 CAGTTAAAGCGTCCACGCTCG 0.612 17 30 CSF3 1440 broad.mit.edu;ucsc.edu 37 17 38172560 38172560 + Silent SNP C C T TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 CCTGGGCTCCCCTGAGCAGCT 0.632 8 8 NUP188 23511 broad.mit.edu;ucsc.edu 37 9 131768629 131768629 + Silent SNP G G A TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 GGATGAAGCAGGAGCTCAGCT 0.592 24 253 AQP10 89872 broad.mit.edu;ucsc.edu 37 1 154295506 154295506 + Missense_Mutation SNP G G A TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 ATCGTTGGACGCCTCCCCTGG 0.532 10 89 DAP 1611 broad.mit.edu;ucsc.edu 37 5 10748365 10748365 + Missense_Mutation SNP C C T TCGA-HT-A614-01A-11D-A29Q-08 TCGA-HT-A614-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx a8c8f66c-25bc-4dea-9ac2-6cafdd75a489 f812a450-4c23-4684-bb9d-b2db9a185156 CTGCACAATTCGCATTCCACC 0.502 15 25