Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OR5M11 219487 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 56310051 56310051 + Missense_Mutation SNP T T C TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 CTCTGCTGATTTGATCCGGAG 0.498 28 65 APLNR 187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 57003704 57003704 + Missense_Mutation SNP G G T TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 ATCCAGCACAGGGCAAAGGTC 0.612 7 73 SIPA1 6494 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 65408860 65408860 + Silent SNP G G A TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 CTGCCAGCTCGGACCTGCTGC 0.667 33 93 USP44 84101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 95914959 95914959 + Nonsense_Mutation SNP G G A TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 ATCTTCTCTCGGTTATTACGT 0.423 20 60 PCNX 22990 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 71443880 71443880 + Nonsense_Mutation SNP A A T TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 CTCTTATAGAAAAGACCACCG 0.493 19 61 THSD4 79875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 72040864 72040864 + Silent SNP G G A TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 AGCTCCGGCCGAATGACATTG 0.597 14 54 CDH8 1006 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 61891032 61891032 + Missense_Mutation SNP G G A TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 CCTGTTTCAGGCTCAATGGAA 0.393 28 47 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577094 7577094 + Missense_Mutation SNP G G A rs28934574 TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 TCTGTGCGCCGGTCTCTCCCA 0.557 44 14 ABCA4 24 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 94480119 94480119 + Nonsense_Mutation SNP C C A TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 TCAAATAATTCCAAGATGAAG 0.438 35 175 FLG 2312 hgsc.bcm.edu;broad.mit.edu 37 1 152282080 152282080 + Missense_Mutation SNP C C T TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 AGACCCTGAACGTCCAGACCT 0.602 37 410 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 21228468 21228468 + Missense_Mutation SNP C C A TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 CACGATGGAACCTGAAGATCT 0.388 30 147 FBXW7 55294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 153244137 153244137 + Missense_Mutation SNP G G A rs140856583 byFrequency TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 GCTCTGATCCGCCACACAACT 0.493 51 115 PCLO 27445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 82583285 82583285 + Silent SNP G G A TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 TTGTTCGTTCGGCCTCCAACT 0.413 22 147 EPHB4 2050 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 100421497 100421497 + Silent SNP C C A TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 GCACGTCACACACTTCGTAGG 0.682 10 34 PI15 51050 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 75756325 75756325 + Missense_Mutation SNP G G A TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 CTATCTGTACGCACTGGAAGG 0.408 16 162 KCNQ3 3786 hgsc.bcm.edu;broad.mit.edu 37 8 133192522 133192522 + Missense_Mutation SNP T T C TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 GGCCAGAACATTGCCTTGGTT 0.597 11 135 RFX2 5990 broad.mit.edu;ucsc.edu 37 19 6013017 6013017 + Silent SNP C C T TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 GGTGCATGGGCTGCTGCCGCA 0.612 34 163 ITGB4 3691 broad.mit.edu;ucsc.edu 37 17 73736512 73736512 + Silent SNP C C T TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 CTCGGGAGTGCGCCCAGCTGC 0.662 4 71 POLN 353497 broad.mit.edu;ucsc.edu 37 4 2073954 2073954 + Missense_Mutation SNP G G A TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 CCTGGCGGAGGGCCCCAGGCC 0.692 8 64 TUBB8P7 197331 broad.mit.edu;ucsc.edu 37 16 90160999 90160999 + RNA SNP C C T TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 GGACTCCGTGCGCTCGGGGCC 0.687 21 128 ABCA4 24 broad.mit.edu;ucsc.edu 37 1 94480120 94480120 + Missense_Mutation SNP C C A TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 CAAATAATTCCAAGATGAAGG 0.438 33 174 IDH1 3417 broad.mit.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 ATAAGCATGACGACCTATGAT 0.393 5 40 LRIT2 340745 broad.mit.edu;hgsc.bcm.edu 37 10 85984831 85984832 + Frame_Shift_Ins INS - - G TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 AAAGGTTCCCAGGGATCTTTCC 0.455 18 77 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76939387 76939387 + Frame_Shift_Del DEL T T - TCGA-HT-A618-01A-11D-A29Q-08 TCGA-HT-A618-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 49fd71af-f8af-43dd-a5d6-caa20d4f82e4 193f9709-5167-4fb6-a1dd-b1c102d01e77 AATATCCTTCTTTTCCAAAGC 0.343 97 96