Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
POLR3A	11128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	79777419	79777419	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-A61A-01A-11D-A29Q-08	TCGA-HT-A61A-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c19bfe8-48ac-4daa-a501-207daba21c54	c405c276-2fbb-43f3-8810-d309682f8196	CTCTCTACGATGTCACCATAC	0.448	15	90
ALDH6A1	4329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	74535667	74535667	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-A61A-01A-11D-A29Q-08	TCGA-HT-A61A-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c19bfe8-48ac-4daa-a501-207daba21c54	c405c276-2fbb-43f3-8810-d309682f8196	TCCGGATGATCGCAAATAAAA	0.418	5	29
EPN2	22905	hgsc.bcm.edu;broad.mit.edu	37	17	19213263	19213263	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-A61A-01A-11D-A29Q-08	TCGA-HT-A61A-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c19bfe8-48ac-4daa-a501-207daba21c54	c405c276-2fbb-43f3-8810-d309682f8196	AGAAGAGGAGCTTCAGCTGCA	0.597	9	111
GALNT14	79623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	31178596	31178596	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-A61A-01A-11D-A29Q-08	TCGA-HT-A61A-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c19bfe8-48ac-4daa-a501-207daba21c54	c405c276-2fbb-43f3-8810-d309682f8196	AATCCGGGACCGGACCAGACC	0.602	13	96
IDH1	3417	hgsc.bcm.edu;broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-A61A-01A-11D-A29Q-08	TCGA-HT-A61A-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c19bfe8-48ac-4daa-a501-207daba21c54	c405c276-2fbb-43f3-8810-d309682f8196	ATAAGCATGACGACCTATGAT	0.393	5	75
GHR	2690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	42699991	42699991	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-A61A-01A-11D-A29Q-08	TCGA-HT-A61A-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c19bfe8-48ac-4daa-a501-207daba21c54	c405c276-2fbb-43f3-8810-d309682f8196	TGGGATTCATGCAGATATCCA	0.428	9	65
BRCA2	675	broad.mit.edu;ucsc.edu	37	13	32907165	32907165	+	Missense_Mutation	SNP	A	A	G	rs80358439		TCGA-HT-A61A-01A-11D-A29Q-08	TCGA-HT-A61A-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c19bfe8-48ac-4daa-a501-207daba21c54	c405c276-2fbb-43f3-8810-d309682f8196	GAGACTTTCAATGCAAGTTTT	0.373	11	120
HMCN1	83872	broad.mit.edu;ucsc.edu	37	1	186084409	186084409	+	Silent	SNP	G	G	A			TCGA-HT-A61A-01A-11D-A29Q-08	TCGA-HT-A61A-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c19bfe8-48ac-4daa-a501-207daba21c54	c405c276-2fbb-43f3-8810-d309682f8196	CTATTGCTCCGGGTCCTACCA	0.398	12	102