Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OR56A4 120793 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 6023641 6023641 + Silent SNP G G A TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d TGAAAGTGATGTCATCACAAG 0.428 17 26 OR8K1 390157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 56113534 56113534 + Missense_Mutation SNP A A T TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d GTGGTAAAACACAATCACACG 0.363 17 35 PGM2L1 283209 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 74085469 74085469 + Silent SNP C C T TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d CCTGTGTTGACTGTATTACTG 0.463 11 19 CAPZA3 93661 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 18891867 18891867 + Missense_Mutation SNP C C T TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d GCTCAACTGGCTCTAAGTTTT 0.393 10 26 SLC15A4 121260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 129283824 129283824 + Missense_Mutation SNP A A T TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d GTGACTGCTCATCCATCCGAT 0.542 55 80 CHD8 57680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 21884050 21884050 + Missense_Mutation SNP C C T TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d CTTAACTTGGCGGTTTGAGCG 0.378 29 26 EIF5 1983 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 103802435 103802435 + Silent SNP G G A TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d TTGCAAAGGCGCTTAATCGGC 0.408 19 8 RYR3 6263 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 34150114 34150114 + Splice_Site SNP C C T TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d GACATGATGACGGTGAGAGCC 0.582 28 37 MYH11 4629 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 15870006 15870006 + Missense_Mutation SNP C C T TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d TCTGGCTTGGCGAATTGCCCG 0.488 72 123 MYH2 4620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 10432347 10432347 + Missense_Mutation SNP C C T rs151164070 TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d TGCTTTGGCCCGGGAGGCCCG 0.592 36 70 SLC35G3 146861 hgsc.bcm.edu;ucsc.edu 37 17 33520856 33520856 + Silent SNP G G A TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d CACACCAGTCGTAGCCACTGA 0.602 169 241 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9076533 9076533 + Missense_Mutation SNP A A G TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d GCTGGTTCCAATGACAGTTAT 0.448 30 42 LILRA6 79168 hgsc.bcm.edu;ucsc.edu 37 19 54742930 54742930 + Missense_Mutation SNP T T C TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d CCCATGCGGATGAGATTCTCC 0.582 34 91 IGFN1 91156 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 201186507 201186507 + Missense_Mutation SNP G G A rs146376343 TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d CCCCGGCAGCGCCCACATCCT 0.662 82 95 CR2 1380 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 207640156 207640156 + Missense_Mutation SNP C C T TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d GATTCTGTGACATTTGCCTGT 0.423 26 58 NAA20 51126 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 19998065 19998065 + Missense_Mutation SNP T T A TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d GGCCTTTACCTGCGACGACCT 0.716 12 31 LRRC3 81543 hgsc.bcm.edu;ucsc.edu 37 21 45877269 45877269 + Missense_Mutation SNP G G A rs75162911 byFrequency TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d CAGCGCCCCCGCCTCCAAGGA 0.647 57 64 HEATR5B 54497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 37289163 37289163 + Nonsense_Mutation SNP G G A TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d GCAGCAGTTCGTAAAAGATCT 0.348 30 55 SPRED2 200734 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 65541089 65541089 + Missense_Mutation SNP T T G TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d GGAGTCCACGTAGGGGTAGTT 0.677 57 103 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179468882 179468882 + Missense_Mutation SNP G G A TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d CCTTTGGTGCGTGCCAAAACT 0.453 47 81 ALPI 248 hgsc.bcm.edu;ucsc.edu 37 2 233320967 233320967 + Missense_Mutation SNP G G A rs61736995 byFrequency TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d CTCCCTGGGCGTCATCCCAGG 0.657 36 49 TRANK1 9881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 36875111 36875111 + Missense_Mutation SNP T T C TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d ACATGAGGCCTGGAAGTCCTT 0.572 12 22 KCNMB2 10242 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178543531 178543531 + Missense_Mutation SNP G G A TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d ACACTCCTGCGCTCATACATG 0.532 79 126 UGT2B11 10720 hgsc.bcm.edu;broad.mit.edu 37 4 70070287 70070287 + Missense_Mutation SNP C C A rs113129893 TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d GGAATGCCCACCATAGGGATC 0.428 14 160 PROL1 58503 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 71275670 71275670 + Missense_Mutation SNP G G A TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d TCAAATTCTCGCCAACCGTCC 0.463 40 92 PARM1 25849 hgsc.bcm.edu;broad.mit.edu 37 4 75938016 75938016 + Missense_Mutation SNP C C A TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d TCGCAGTCCGCTGCTGAGCCT 0.572 22 261 TRAM1L1 133022 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 118006209 118006209 + Missense_Mutation SNP G G A TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d GTTTTGTTTCGCTTTGGTGAA 0.373 14 34 TMEM184C 55751 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 148555479 148555479 + Missense_Mutation SNP C C T TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d TTTGGACACACTGTGACTCCC 0.408 33 55 ADAMTS19 171019 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 129070795 129070795 + Silent SNP C C G TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d TAACATCACCCAGACTGGGTA 0.338 21 46 EGFR 1956 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 55221743 55221743 + Missense_Mutation SNP A A C TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d GTGCAAGGACACCTGCCCCCC 0.577 38 128 MET 4233 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 116395440 116395440 + Missense_Mutation SNP G G C TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d CTTGAAGGAGGGACAAGGCTG 0.368 478 1159 FSCN3 29999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 127240253 127240253 + Missense_Mutation SNP G G C TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d TCCAGCACAGGGGGGATCCTT 0.572 18 81 GFRA2 2675 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 21608324 21608324 + Silent SNP C C T TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d GCTCGGTGGGCGAGATCTCGC 0.607 36 52 TMEM67 91147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 94828614 94828614 + Silent SNP C C T TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d TTAGATATATCCGTAATACAG 0.259 8 27 COL27A1 85301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 117005792 117005792 + Missense_Mutation SNP G G C TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d TGCAGGGTCAGCCTGGCAGGA 0.627 17 25 TRAF2 7186 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 139815579 139815579 + Silent SNP C C T TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d CATCCACCTACGATGGGGTCT 0.602 39 47 MYO7B 4648 broad.mit.edu;ucsc.edu 37 2 128384765 128384765 + Missense_Mutation SNP G G A TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d CCAGGCCCCCGCCTGCCCAAG 0.617 7 14 ANXA6 309 broad.mit.edu;ucsc.edu 37 5 150488109 150488109 + Missense_Mutation SNP A A G TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d AACTCCTGGAAGACTGGCCAC 0.582 63 111 KCND2 3751 broad.mit.edu;ucsc.edu 37 7 120381623 120381623 + Missense_Mutation SNP C C G TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d CAGCCAAAAGCGGAAGCGCAA 0.373 14 55 PCSK6 5046 broad.mit.edu;ucsc.edu 37 15 101938646 101938646 + Missense_Mutation SNP C C T TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d CTTAGCCAGTCGGCCGGGCCC 0.567 94 150 NAB1 4664 broad.mit.edu;ucsc.edu 37 2 191537858 191537858 + Missense_Mutation SNP C C G TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d TGAATTATCCCCAAAGAGAAT 0.318 10 23 EXOC8 149371 broad.mit.edu;hgsc.bcm.edu 37 1 231472849 231472851 + In_Frame_Del DEL CCA CCA - rs142526535 TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d AGCCAGGTAGCCACCAACAAGCA 0.547 43 72 SLIT2 9353 broad.mit.edu;hgsc.bcm.edu 37 4 20525656 20525659 + Frame_Shift_Del DEL TTTA TTTA - TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d CCAGAACCCCTTTATTTGTGACTG 0.485 59 111 RFC1 5981 broad.mit.edu;hgsc.bcm.edu 37 4 39325012 39325014 + In_Frame_Del DEL TCA TCA - TCGA-HT-A61C-01A-11D-A29Q-08 TCGA-HT-A61C-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx afbb1eaf-692a-4f24-8d59-049b4f6c59dc 03f58553-7605-4ed2-ace0-6ce09e76087d GGCAAACTCTTCATCTTCATGCA 0.379 16 35