Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
MCM10	55388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	13231079	13231079	+	Splice_Site	SNP	A	A	G			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	TGCAGCTTCAATGTAAGACGT	0.478	11	72
SLCO1B1	10599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	21392093	21392093	+	Silent	SNP	T	T	C			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	TTGTCCCTTCTGCTGGGGCAG	0.343	24	104
ANO6	196527	hgsc.bcm.edu;broad.mit.edu	37	12	45797221	45797221	+	Splice_Site	SNP	G	G	T			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	TAACCTTCTAGTGTGACCCAG	0.338	8	105
TRIM13	10206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	50586070	50586070	+	Splice_Site	SNP	G	G	A			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	TTTTCTGGTAGGATGTGATGG	0.373	29	74
CPPED1	55313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	12798613	12798613	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	TGGCAGTGCCGCTGCCTCGCG	0.602	20	80
CDH16	1014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	66950067	66950067	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	ACAGGCTGTGGACCCCACAAG	0.612	22	94
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	GCACAAACACGCACCTCAAAG	0.542	16	12
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	6709693	6709693	+	Splice_Site	SNP	A	A	G			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	ACTGGCCCTTACCTTACTCTG	0.627	28	222
SIM2	6493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	38098527	38098527	+	Silent	SNP	G	G	A			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	GCCAGTCGCTGCCACCCAGTG	0.542	27	67
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	ATAAGCATGACGACCTATGAT	0.393	19	59
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	168834410	168834410	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	TAAGGAAGACGTAGTGCTGAA	0.453	23	144
FAM193A	8603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	2696820	2696820	+	Silent	SNP	C	C	T			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	GCAAGTACTGCGACTGCTGCT	0.582	7	54
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	137708439	137708439	+	Missense_Mutation	SNP	T	T	A			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	GTTATCGTGCTTCTGCTGGAA	0.507	35	61
GRK6	2870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	176857877	176857877	+	Silent	SNP	C	C	T			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	CCACAGGTGGCGGTGGAAATC	0.612	10	25
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	18776969	18776969	+	Silent	SNP	C	C	T			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	GGGAGAAGGACGGCCAGCACC	0.677	18	45
TCF7L2	6934	broad.mit.edu;ucsc.edu	37	10	114912156	114912156	+	Missense_Mutation	SNP	T	T	G			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	GAGCGACAGCTTCATATGCAA	0.527	20	214
FRMPD4	9758	broad.mit.edu;ucsc.edu	37	X	12734264	12734264	+	Silent	SNP	C	C	T			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	CCTTTATTGGCGAAGGGGAAC	0.468	9	78
ZNF876P	642280	broad.mit.edu;ucsc.edu	37	4	248382	248382	+	RNA	SNP	A	A	C			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	CTGGGCAAAAACCCTACAAAT	0.373	7	6
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76938654	76938655	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HW-7489-01A-11D-2024-08	TCGA-HW-7489-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b715d3c6-d531-4459-b0c6-af666fee4ba0	33621334-7062-489b-933b-411706720ca0	TACGCTTATCCTTTTTTCTCAC	0.356	77	57