Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OR4A15 81328 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55136122 55136122 + Missense_Mutation SNP A A T TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 CTCTCTTAAGACTCAGAGTTT 0.438 64 78 OR5D16 390144 hgsc.bcm.edu;broad.mit.edu 37 11 55606760 55606760 + Missense_Mutation SNP A A G TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 ACAATCAATCATTTCTTCTGT 0.423 5 55 NPAS4 266743 hgsc.bcm.edu;broad.mit.edu 37 11 66192121 66192121 + Missense_Mutation SNP C C T rs142965018 byFrequency TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 GGGGACTGCACGCTCTTGGCC 0.607 17 183 MMP1 4312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 102666337 102666337 + Splice_Site SNP C C T TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 GTAAGTTGTACTCTAAAAAGG 0.368 11 29 GRIN2B 2904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 13716801 13716801 + Missense_Mutation SNP C C T TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 TTCCTTGTCCCTGAAGTAGCG 0.617 20 29 KRT84 3890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 52777394 52777394 + Silent SNP G G A TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 AGCCCTCTAGGACATCCTGCA 0.577 18 18 RP11-162P23.2 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 112193513 112193513 + Missense_Mutation SNP G G A TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 TGGTCGCCCCGTCCATGGCCT 0.517 19 130 RAB27A 5873 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 55497820 55497820 + Missense_Mutation SNP C C T rs141362723 by1000genomes TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 CCGTTCCATTCGCTTCATTAT 0.463 65 84 HSDL1 83693 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 84163854 84163854 + Missense_Mutation SNP G G A TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 TCTCGAATTGGAAGGTAGATC 0.473 16 165 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577120 7577120 + Missense_Mutation SNP C C T rs28934576 by1000genomes TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 GGCACAAACACGCACCTCAAA 0.542 29 3 ARHGEF10L 55160 hgsc.bcm.edu;broad.mit.edu 37 1 17961457 17961457 + Missense_Mutation SNP G G C TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 CAAGGACAATGTGCTCATCCA 0.642 3 46 ELMOD3 84173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 85617291 85617291 + Silent SNP C C T TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 AGGTCATCCCCGTGGTGAACA 0.567 23 46 GPR39 2863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 133175296 133175296 + Silent SNP C C T TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 TCTTCGGCGCCTTCGTGGTCT 0.612 30 50 TANK 10010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 162087893 162087893 + Missense_Mutation SNP C C T TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 AAAACAAAGCCCTCAAATCTC 0.383 10 126 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 ATAAGCATGACGACCTATGAT 0.393 24 64 SLC6A11 6538 hgsc.bcm.edu;broad.mit.edu 37 3 10885932 10885932 + Missense_Mutation SNP G G C TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 ACGGGATCGAGCACATCGGGA 0.587 3 44 MAN2B2 23324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 6612960 6612960 + Silent SNP C C T TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 GAGGAGCGCACTGGCGCTGCA 0.627 15 21 COL25A1 84570 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 109805344 109805344 + Missense_Mutation SNP G G A TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 CTTTATCCCCGGAAGTCCAGG 0.413 25 47 SCAND3 114821 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 28540794 28540794 + Missense_Mutation SNP A A G TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 tccaaaccacatttgttaaca 0.353 9 45 PTCHD4 442213 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 47976601 47976601 + Missense_Mutation SNP A A T TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 GTCTTATGAAAGTCCCTCCAG 0.527 18 38 CDK14 5218 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 90613505 90613505 + Silent SNP T T A TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 AAGGAGTTGCTGCTTTTCCAG 0.348 42 115 XKR9 389668 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 71646066 71646066 + Missense_Mutation SNP T T C TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 TGCTATTTCTTGGTCAACTGT 0.299 6 50 CDH17 1015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 95182644 95182644 + Silent SNP G G A TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 CATTCTCCTGGACCTCAAATA 0.438 64 101 FAM78A 286336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 134136482 134136482 + Silent SNP C C T TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 TGGTGGCCACCAGCCAGGTGG 0.617 28 48 FRMD7 90167 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 131214037 131214037 + Silent SNP T T C TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 ACCTTACTTGTTTTGACACAT 0.398 85 34 RPS4Y2 140032 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 Y 22930744 22930744 + Missense_Mutation SNP C C A TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 GAATTCCACACCTGGTGACTC 0.438 22 29 PALD1 27143 broad.mit.edu;ucsc.edu 37 10 72307126 72307126 + Missense_Mutation SNP C C T TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 GTGGACGCAGCGCTGGACACT 0.617 29 58 GPX2 2877 broad.mit.edu;ucsc.edu 37 14 65406296 65406296 + Silent SNP C C T rs17885748 TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 GCTCTCCCTCCGGCCCTATGA 0.537 20 105 FRY 10129 broad.mit.edu;ucsc.edu 37 13 32852686 32852686 + Splice_Site SNP G G C TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 CGAAGAAAAGGTAATAAAAGC 0.443 16 100 OR2M7 391196 broad.mit.edu;ucsc.edu 37 1 248487368 248487368 + Missense_Mutation SNP T T C TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 AGACCCACAGTAGGAGAAGGA 0.448 108 182 MYO18A 399687 broad.mit.edu;ucsc.edu 37 17 27430667 27430667 + Missense_Mutation SNP G G C TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 AAGCACTCCAGCAGCTCCTCC 0.667 3 47 APRT 353 broad.mit.edu;ucsc.edu 37 16 88876924 88876924 + Silent SNP G G A TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 CAAGCTCCTGGGCCAGGGAGG 0.637 2 22 SDAD1P1 157489 broad.mit.edu;ucsc.edu 37 8 26237249 26237249 + RNA SNP G G A TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 GGGATTTCCCGGGGACAGCGT 0.458 6 45 PHF23 79142 broad.mit.edu;ucsc.edu 37 17 7139547 7139547 + Silent SNP T T C TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 GCCCAGGAGGTGGGAGTCTAT 0.552 41 81 RUNX1T1 862 broad.mit.edu;ucsc.edu 37 8 93026829 93026829 + Missense_Mutation SNP C C T TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 AACGAGGGTGCGAACTCTTTC 0.507 12 88 ASPM 259266 broad.mit.edu;hgsc.bcm.edu 37 1 197070598 197070599 + Frame_Shift_Del DEL TC TC - rs144088344 by1000genomes TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 TGAAATACTTTCTGTTTCTTTT 0.356 12 32 AMOTL2 51421 broad.mit.edu;hgsc.bcm.edu 37 3 134078153 134078155 + In_Frame_Del DEL TGT TGT - TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 GGGCGTCTGCTGTTTGTCGCTCA 0.596 21 66 CYP3A7 1551 broad.mit.edu;hgsc.bcm.edu 37 7 99312223 99312224 + Frame_Shift_Del DEL TT TT - TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 GTTTTACAGATTTTGTTAGAAA 0.312 19 89 RANBP6 26953 broad.mit.edu;hgsc.bcm.edu 37 9 6013101 6013102 + Frame_Shift_Del DEL AG AG - TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 CTCATCTTGCAGAGACATCTCA 0.337 24 97 UHRF2 115426 broad.mit.edu;hgsc.bcm.edu 37 9 6497275 6497278 + Frame_Shift_Del DEL CAGT CAGT - TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 GCTGGTAAGCCAGTCAGAGTGATA 0.426 16 40 AKAP8 10270 broad.mit.edu;hgsc.bcm.edu 37 19 15471767 15471769 + In_Frame_Del DEL GAA GAA - TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 CGATCTTCTTGAAGAAGTGCTCC 0.571 10 21 LENG9 94059 broad.mit.edu;hgsc.bcm.edu 37 19 54973460 54973461 + Frame_Shift_Del DEL TG TG - TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 CCCTGGAGACTGTAGTGTACTC 0.644 44 53 USP9X 8239 broad.mit.edu;hgsc.bcm.edu 37 X 41088882 41088884 + In_Frame_Del DEL AAG AAG - TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 ATGAACTTGAAAGAAGACCATAT 0.404 15 34 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76918976 76918977 + Frame_Shift_Del DEL TA TA - TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 CGCAAAAGCCTATGTCTGTATC 0.356 21 5 ARID1A 8289 broad.mit.edu 37 1 27057848 27057848 + Frame_Shift_Del DEL C C - TCGA-HW-7490-01A-11D-2024-08 TCGA-HW-7490-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ca68843d-1087-4efa-b5f8-0acd8982fb3b 855988d0-f042-466d-86a8-1ac1cb1bc7a1 CCTCCATACTCCCAGCAGCCA 0.632 25 245