Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count BRAP 8315 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 112110475 112110475 + Missense_Mutation SNP T T C rs150096881 TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 ATCTTCAGATTTGAGCACTTC 0.363 27 47 REC8 9985 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 24642224 24642224 + Missense_Mutation SNP A A G TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 ATCCGCGTCTATTCTCAACAA 0.617 58 85 ADSSL1 122622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 105209429 105209429 + Missense_Mutation SNP G G A TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 CTGCAGACCCGCGGCCACGAG 0.612 46 77 RBFOX1 54715 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 7629894 7629894 + Missense_Mutation SNP G G T TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 TTCAGGTTCCGGGATCCGGAC 0.542 24 50 METTL16 79066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 2371168 2371168 + Missense_Mutation SNP C C T TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 GGCACTTTCACCACTAGGAGA 0.398 12 71 SMARCA4 6597 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 11143994 11143994 + Missense_Mutation SNP G G A TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 CGAGCCCACCGCATCGGGCAG 0.612 38 79 GIPC1 10755 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 14591417 14591417 + Silent SNP G G A TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 TGATGAAGGCGTAGCCAGCCC 0.657 57 63 TFPT 29844 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 54611508 54611508 + Missense_Mutation SNP G G A TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 CTCATTCTCCGCATTGCCTGG 0.677 11 9 KCNT2 343450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 196250118 196250118 + Splice_Site SNP T T C TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 GTGATTTTCATCTATAACACA 0.348 9 16 C1orf186 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 206243208 206243208 + Silent SNP G G A TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 GCAGGAAGAGGGACACCACCG 0.527 35 54 MIA3 375056 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 222805521 222805521 + Missense_Mutation SNP C C T TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 GCAACCACTGCATGAAGATAA 0.498 17 106 APOL1 8542 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 36661324 36661324 + Missense_Mutation SNP A A G TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 TCCTCGGTTGAAAAGTGAGCT 0.478 63 97 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 ATAAGCATGACGACCTATGAT 0.393 32 53 ROBO1 6091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 78685111 78685111 + Missense_Mutation SNP C C T TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 ATTGACAAAACGCCCATCCTT 0.473 60 77 RAD17 5884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 68689027 68689027 + Missense_Mutation SNP T T C TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 CCCTCTCATTTATCAGAATAT 0.313 13 27 KCNN2 3781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 113698887 113698887 + Missense_Mutation SNP C C T TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 CGACTACGCGCTCATCTTCGG 0.597 18 58 SERPINE1 5054 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 100779018 100779018 + Silent SNP G G A TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 TCCACGTCGCGCAGGCGCTGC 0.587 36 118 TAS1R3 83756 broad.mit.edu;hgsc.bcm.edu 37 1 1267913 1267913 + Frame_Shift_Del DEL C C - TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 TGCACGAGTTCCCCCAGTACG 0.692 15 29 NEU2 4759 broad.mit.edu;hgsc.bcm.edu 37 2 233898908 233898909 + Frame_Shift_Ins INS - - G TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 GACGCGCAGACGGGGACCCTCT 0.619 32 161 NOTCH1 4851 broad.mit.edu 37 9 139399848 139399848 + Frame_Shift_Del DEL G G - TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 GGCCGTCACTGAAGTACTTCC 0.617 18 21 NOTCH1 4851 broad.mit.edu 37 9 139395301 139395301 + Splice_Site SNP T T G TCGA-HW-8322-01A-11D-2395-08 TCGA-HW-8322-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fbb7361c-879c-4964-b6c8-07b5d8d4da46 088c5f2e-ee43-4263-9962-ef89954380a7 TGAAGCCATCTGCAGAGGCAG 0.701 3 30