Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
TTC17	55761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	43423074	43423074	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	CGCTATCATCGTGGAGATATC	0.373	11	24
FANCM	57697	hgsc.bcm.edu;ucsc.edu	37	14	45645153	45645153	+	Missense_Mutation	SNP	C	C	G			TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	AAAAAGTTGCCTTTATGATAT	0.303	4	35
CRAMP1L	57585	hgsc.bcm.edu;broad.mit.edu	37	16	1718033	1718033	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	ATACCGCTGTCCTCGTCAGAG	0.602	22	43
XYLT1	64131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	17202869	17202869	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	AGCTTCAGTGCCTCCTCTGAA	0.562	50	40
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577586	7577586	+	Missense_Mutation	SNP	A	A	C			TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	GTTGTAGTGGATGGTGGTACA	0.552	41	10
PLVAP	83483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	17476154	17476154	+	Missense_Mutation	SNP	G	G	C			TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	ATCCTGAGCTGCTCCGCCTCC	0.622	44	72
CYP2B6	1555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	41515236	41515236	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	GAGAAGCACCGTGAAACCCTG	0.527	72	147
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	ATAAGCATGACGACCTATGAT	0.393	19	43
EFHC2	80258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	44120532	44120532	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	CCGATGACGCCGGATAGAAGT	0.413	23	35
ALAS2	212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	55052378	55052378	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	TAGGAGGCTTGTGGGGCCCCG	0.542	15	64
UBQLN2	29978	hgsc.bcm.edu;ucsc.edu	37	X	56590705	56590705	+	Silent	SNP	C	C	T			TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	GGAGTAACTCCACACCTATTT	0.572	8	55
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76939961	76939961	+	Missense_Mutation	SNP	A	A	G			TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	TAGCAATACCATTGGTTGTTT	0.393	117	109
DCAF12L2	340578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	125299672	125299672	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	CCTCTGGACGGCGTAGCCCCG	0.706	28	57
PLXNB3	5365	broad.mit.edu;ucsc.edu	37	X	153039467	153039467	+	Missense_Mutation	SNP	C	C	A			TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	CTTCCTGTACCAGCCCAACCC	0.672	28	66
OR1D2	4991	broad.mit.edu;ucsc.edu	37	17	2995927	2995927	+	Missense_Mutation	SNP	G	G	A	rs73300984	byFrequency	TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	GCCACATAGCGGTCATATGCC	0.537	21	105
IPO8	10526	broad.mit.edu;ucsc.edu	37	12	30827606	30827606	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	TCAAAGAGCCGAGCTACAATA	0.418	76	128
GRIP2	80852	broad.mit.edu;ucsc.edu	37	3	14535207	14535207	+	RNA	SNP	C	C	T			TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	GCCTGGCGATCGGGGGGCCCG	0.672	10	9
RLIM	51132	broad.mit.edu;hgsc.bcm.edu	37	X	73812199	73812200	+	Frame_Shift_Ins	INS	-	-	G	rs61752449		TCGA-HW-A5KL-01A-11D-A27K-08	TCGA-HW-A5KL-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c6e34202-c506-416d-bc41-de772c33295e	31928eee-d7e5-4671-950d-0defa8244100	GGACTATGGTTGGAGGTCTCTG	0.48	30	33