Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PRKCQ 5588 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 6472890 6472890 + Missense_Mutation SNP C C T TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf CTCAGGTTCTCGCACGAAGAG 0.587 20 37 ATG2A 23130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 64665787 64665787 + Silent SNP C C T TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf AGCACTCAGGCCCACCCAGGT 0.637 20 17 ARHGEF12 23365 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 120312904 120312904 + Missense_Mutation SNP G G T TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf TTTCTAGATCGATCAGCAGTA 0.388 11 17 FAM214A 56204 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 52901049 52901049 + Missense_Mutation SNP T T C TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf TCCAACACAGTAACTTTTATT 0.284 10 32 MLLT6 4302 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 36872811 36872811 + Missense_Mutation SNP T T A TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf CATGCGCTTCTCCACCACCAC 0.662 44 91 TANC2 26115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 61498201 61498201 + Missense_Mutation SNP C C T TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf CCAGCCCAGCCCAGCCGTCCA 0.577 46 122 AMZ2 51321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 66246612 66246612 + Splice_Site SNP G G A TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf CAGTCCATTGGTAAATACTGG 0.463 16 172 SLC38A10 124565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 79219799 79219799 + Nonsense_Mutation SNP G G A TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf CGGTGGCCCTGCTGTCCACCC 0.692 36 53 GATSL3 652968 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 30683477 30683477 + Missense_Mutation SNP C C T TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf CACTGCCGCACCGCTGTGAGA 0.627 24 38 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf ATAAGCATGACGACCTATGAT 0.393 23 44 IL6ST 3572 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 55259245 55259245 + Missense_Mutation SNP T T G TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf ATAACACTCTTAATACTTGGG 0.343 5 42 MAP3K4 4216 hgsc.bcm.edu;broad.mit.edu 37 6 161528964 161528964 + Missense_Mutation SNP T T G TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf TACACCTGCATCAGCGTCGAC 0.552 6 80 HBP1 26959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 106836571 106836571 + Missense_Mutation SNP C C G TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf TGAATATACTCAGATGTATCC 0.363 23 33 MAPK15 225689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 144803509 144803509 + Missense_Mutation SNP C C T TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf CCCTCAGCTGCCTTCTAGGAC 0.672 68 113 DOT1L 84444 broad.mit.edu;ucsc.edu 37 19 2226268 2226268 + Missense_Mutation SNP G G A TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf GCCCATCTCCGACATCGGCCT 0.677 3 32 NEB 4703 broad.mit.edu;ucsc.edu 37 2 152409936 152409936 + Silent SNP C C T TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf CATAAGCATGCTTGGCATGGA 0.398 25 52 PRR19 284338 broad.mit.edu;ucsc.edu 37 19 42814088 42814088 + Missense_Mutation SNP C C T TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf GGAACCAGCCCCACGGTCCAG 0.672 5 22 TREX1 11277 broad.mit.edu;hgsc.bcm.edu 37 3 48508260 48508261 + Frame_Shift_Del DEL TG TG - TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf AAGCTCTCCCTGTGTGTGGCTC 0.634 67 145 ZBTB20 26137 broad.mit.edu;hgsc.bcm.edu 37 3 114058232 114058234 + In_Frame_Del DEL AGA AGA - TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf TCCTTTAAGGAGAAGGAGCGCCA 0.502 28 66 MBD4 8930 broad.mit.edu;hgsc.bcm.edu 37 3 129155397 129155399 + In_Frame_Del DEL CTT CTT - TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf CTTTCCACAACTTCTACTTTTGT 0.384 24 53 DST 667 broad.mit.edu;hgsc.bcm.edu 37 6 56336894 56336896 + In_Frame_Del DEL CTT CTT - TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf GAGTTTCCTCCTTCTTTCCAACG 0.453 47 103 EFR3A 23167 broad.mit.edu;hgsc.bcm.edu 37 8 132968053 132968055 + In_Frame_Del DEL AAG AAG - rs138896182 TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf GCAACTGACAAAGAAGAGAATCC 0.384 35 106 NOTCH1 4851 broad.mit.edu;hgsc.bcm.edu 37 9 139413129 139413131 + In_Frame_Del DEL TCA TCA - TCGA-P5-A5ET-01A-11D-A27K-08 TCGA-P5-A5ET-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 236fee8c-7daa-4486-9f81-62c185c37644 01325296-d7a6-46e7-bd59-30809d85a1cf GCTGGCACAGTCATCAATGTTCT 0.631 14 45