Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
LRRC32	2615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	76371010	76371010	+	Silent	SNP	G	G	A			TCGA-P5-A5EW-01A-11D-A27K-08	TCGA-P5-A5EW-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0bca7013-0c0a-4de7-81a7-f120b1770c3f	e665f8dc-e32d-4c92-b2e0-bd7c101df2ec	TTGTTTCGCAGGTCCAGCACC	0.637	14	73
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	rs28934576	by1000genomes	TCGA-P5-A5EW-01A-11D-A27K-08	TCGA-P5-A5EW-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0bca7013-0c0a-4de7-81a7-f120b1770c3f	e665f8dc-e32d-4c92-b2e0-bd7c101df2ec	GGCACAAACACGCACCTCAAA	0.542	42	3
KRI1	65095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	10668901	10668901	+	Silent	SNP	G	G	A			TCGA-P5-A5EW-01A-11D-A27K-08	TCGA-P5-A5EW-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0bca7013-0c0a-4de7-81a7-f120b1770c3f	e665f8dc-e32d-4c92-b2e0-bd7c101df2ec	CGTAGTACTCGTCCCCAAAGC	0.602	23	79
CCDC105	126402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	15133702	15133702	+	Missense_Mutation	SNP	G	G	T			TCGA-P5-A5EW-01A-11D-A27K-08	TCGA-P5-A5EW-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0bca7013-0c0a-4de7-81a7-f120b1770c3f	e665f8dc-e32d-4c92-b2e0-bd7c101df2ec	AAGCTGCAGTGCCACATCACG	0.617	9	16
TMCC2	9911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	205210633	205210633	+	Splice_Site	SNP	A	A	G			TCGA-P5-A5EW-01A-11D-A27K-08	TCGA-P5-A5EW-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0bca7013-0c0a-4de7-81a7-f120b1770c3f	e665f8dc-e32d-4c92-b2e0-bd7c101df2ec	CCCCCTTAAGAAAATCCAGCA	0.557	40	38
OR2B11	127623	hgsc.bcm.edu;broad.mit.edu	37	1	247614765	247614765	+	Missense_Mutation	SNP	C	C	T			TCGA-P5-A5EW-01A-11D-A27K-08	TCGA-P5-A5EW-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0bca7013-0c0a-4de7-81a7-f120b1770c3f	e665f8dc-e32d-4c92-b2e0-bd7c101df2ec	ACCTGCCGCCCGCAGAATGGC	0.597	4	54
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-P5-A5EW-01A-11D-A27K-08	TCGA-P5-A5EW-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0bca7013-0c0a-4de7-81a7-f120b1770c3f	e665f8dc-e32d-4c92-b2e0-bd7c101df2ec	ATAAGCATGACGACCTATGAT	0.393	26	31
CDCP1	64866	hgsc.bcm.edu;broad.mit.edu	37	3	45127212	45127212	+	Missense_Mutation	SNP	T	T	C			TCGA-P5-A5EW-01A-11D-A27K-08	TCGA-P5-A5EW-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0bca7013-0c0a-4de7-81a7-f120b1770c3f	e665f8dc-e32d-4c92-b2e0-bd7c101df2ec	ATTGTTGGGATGGGAGAAGGT	0.552	12	144
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140711256	140711256	+	Silent	SNP	C	C	A			TCGA-P5-A5EW-01A-11D-A27K-08	TCGA-P5-A5EW-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0bca7013-0c0a-4de7-81a7-f120b1770c3f	e665f8dc-e32d-4c92-b2e0-bd7c101df2ec	AGGTACTGATCAAAGTTTTGG	0.418	35	62
GABRP	2568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	170236583	170236583	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5EW-01A-11D-A27K-08	TCGA-P5-A5EW-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0bca7013-0c0a-4de7-81a7-f120b1770c3f	e665f8dc-e32d-4c92-b2e0-bd7c101df2ec	AGTGACGACCGTGTTATCAAT	0.517	83	91
FBXL6	26233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	145580132	145580132	+	Silent	SNP	G	G	A			TCGA-P5-A5EW-01A-11D-A27K-08	TCGA-P5-A5EW-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0bca7013-0c0a-4de7-81a7-f120b1770c3f	e665f8dc-e32d-4c92-b2e0-bd7c101df2ec	AGCCTGGTCCGGGAGCCACCC	0.652	59	61
OPHN1	4983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	67413796	67413796	+	Splice_Site	SNP	T	T	C			TCGA-P5-A5EW-01A-11D-A27K-08	TCGA-P5-A5EW-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0bca7013-0c0a-4de7-81a7-f120b1770c3f	e665f8dc-e32d-4c92-b2e0-bd7c101df2ec	TTAGCTCCACTGTTTCAAGCA	0.408	15	34
RGPD3	653489	broad.mit.edu;ucsc.edu	37	2	107029596	107029596	+	Missense_Mutation	SNP	T	T	C			TCGA-P5-A5EW-01A-11D-A27K-08	TCGA-P5-A5EW-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0bca7013-0c0a-4de7-81a7-f120b1770c3f	e665f8dc-e32d-4c92-b2e0-bd7c101df2ec	CAACATCGTATTTATAACAGG	0.438	81	9
CYP39A1	51302	broad.mit.edu;ucsc.edu	37	6	46518143	46518143	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5EW-01A-11D-A27K-08	TCGA-P5-A5EW-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0bca7013-0c0a-4de7-81a7-f120b1770c3f	e665f8dc-e32d-4c92-b2e0-bd7c101df2ec	TTGCCCTTCCGGCTGGGGGAC	0.458	19	42
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76939758	76939762	+	Frame_Shift_Del	DEL	TTTCT	TTTCT	-			TCGA-P5-A5EW-01A-11D-A27K-08	TCGA-P5-A5EW-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0bca7013-0c0a-4de7-81a7-f120b1770c3f	e665f8dc-e32d-4c92-b2e0-bd7c101df2ec	AATCATCTAATTTCTTTTCTTCTCC	0.341	23	37
MAGEA6	4105	broad.mit.edu;hgsc.bcm.edu	37	X	151870011	151870011	+	Frame_Shift_Del	DEL	G	G	-			TCGA-P5-A5EW-01A-11D-A27K-08	TCGA-P5-A5EW-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0bca7013-0c0a-4de7-81a7-f120b1770c3f	e665f8dc-e32d-4c92-b2e0-bd7c101df2ec	TTTGAGGGGAGGGAAGACAGT	0.532	144	219