Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count NUP98 4928 hgsc.bcm.edu;broad.mit.edu 37 11 3697451 3697451 + Missense_Mutation SNP T T C TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 AGTTCGTCCATGGCATAGTCC 0.582 11 129 FBXL3 26224 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 77581815 77581815 + Missense_Mutation SNP C C T TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 ATGTTCTAATCGAACATGTTT 0.418 23 49 KIAA1024 23251 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 79749239 79749239 + Silent SNP C C T TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 CATTTGTGGTCCAGTCCTGTG 0.473 27 84 BZRAP1 9256 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 56388978 56388978 + Missense_Mutation SNP T T C TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 CCGGACACCGTTGGATGTGCC 0.602 41 97 PRX 57716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 40901791 40901791 + Missense_Mutation SNP G G A TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 CTCAGCACCCGCCTCGCCTGG 0.587 11 115 SOGA1 140710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 35445831 35445831 + Silent SNP G G T TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 TCTTCTTATCGGCCTTCCCCA 0.458 8 6 ZC3H6 376940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 113089666 113089666 + Silent SNP A A G TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 ACGGTTCATCATCCACATCAG 0.443 16 25 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179410161 179410161 + Silent SNP A A G TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 CGCTGGGCTCACTGTTACCAG 0.468 51 92 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 ATAAGCATGACGACCTATGAT 0.393 17 59 BOD1L1 259282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 13603085 13603085 + Silent SNP G G A TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 CAAAGCCTTCGCTGCTATCTT 0.488 24 189 NMBR 4829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 142397180 142397180 + Missense_Mutation SNP T T A TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 CGTTTCCGTGTTTCCATCTGC 0.388 25 59 WIPI2 26100 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 5256804 5256804 + Missense_Mutation SNP G G A TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 GCAGGTCTTCGATACCATTAA 0.527 20 45 COA1 55744 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 43687182 43687182 + Missense_Mutation SNP C C T TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 TAGAACACACCGTGGAAAAGG 0.493 37 79 CROT 54677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 87005181 87005181 + Missense_Mutation SNP T T C TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 CCAGAGAACTTGGCTTTGTTA 0.368 11 40 FOXP2 93986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 114294061 114294061 + Missense_Mutation SNP A A T TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 CATCTCCCAAACCtgtaagtg 0.393 31 85 KEL 3792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 142638440 142638440 + Nonsense_Mutation SNP G G A TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 CCGTGGACTCGGAGGTGTGGA 0.622 60 145 BARX1 56033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 96714489 96714489 + Missense_Mutation SNP G G A TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 CGGCACCTCCGCCGGTTTCTC 0.682 19 34 MAGEB1 4112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 30269583 30269583 + Missense_Mutation SNP C C T TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 TAGAGCCAGGCGTCGCACTAC 0.527 43 93 KIF4A 24137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 69615591 69615591 + Missense_Mutation SNP T T G TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 AATGACCTCCTTGAAGATAGA 0.438 41 57 BRWD3 254065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 79942476 79942476 + Silent SNP A A G TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 TACACTTTAAAGACTGTCTTC 0.383 14 43 TENM1 10178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 123519691 123519691 + Missense_Mutation SNP G G C TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 TCTGCGCCCTGTCCCCAGATG 0.483 63 119 ZNF551 90233 broad.mit.edu;ucsc.edu 37 19 58197953 58197953 + Missense_Mutation SNP A A G TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 AACTCACCTCAGTGAGATTAA 0.478 64 53 CLDN11 5010 broad.mit.edu;ucsc.edu 37 3 170141061 170141061 + Missense_Mutation SNP G G A TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 CCAGGAGCCCGGTGTGGCTAA 0.602 54 116 KIAA1429 25962 broad.mit.edu;hgsc.bcm.edu 37 8 95541443 95541445 + In_Frame_Del DEL TTG TTG - TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 ctccttcttcttgttgttcctct 0.438 10 28 MPRIP 23164 broad.mit.edu;hgsc.bcm.edu 37 17 17046885 17046886 + Frame_Shift_Ins INS - - C TCGA-P5-A5EX-01A-12D-A289-08 TCGA-P5-A5EX-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 42140289-18f9-445b-9f13-4f62850e9d4c 469cfe62-ab1f-4fc4-b38e-bd8c8c9bc1b1 CACCAATGAAGCCCCCCCAGCT 0.649 18 51