Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count TTC17 55761 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 43515339 43515339 + Missense_Mutation SNP C C T TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 TTTGAAAAAGCACTGGTGTGG 0.463 62 177 NCAPD2 9918 hgsc.bcm.edu;broad.mit.edu 37 12 6635636 6635636 + Silent SNP C C G TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 CAGACCCACTCTGGATCCCAT 0.552 9 127 TEP1 7011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 20854643 20854643 + Missense_Mutation SNP G G A TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 ACGCCCCAGCGGAGGTCGATT 0.657 8 47 PRMT5 10419 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 23395475 23395475 + Missense_Mutation SNP T T C TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 AATGACATGATTAGATGGGAG 0.473 10 106 SERPINA3 12 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 95085593 95085593 + Missense_Mutation SNP G G C TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 ACTTGAGCAAGAAAAAGTGGG 0.507 39 40 CCR7 1236 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 38711204 38711204 + Silent SNP G G A TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 TGTAGGTGACGTCGTAGGCGA 0.567 12 100 KRT37 8688 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 39579137 39579137 + Missense_Mutation SNP C C T TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 TTCTGCGTCCCGCACTTGTCC 0.627 32 147 MUC16 94025 hgsc.bcm.edu;broad.mit.edu 37 19 9075050 9075050 + Silent SNP T T A TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 TGGTCTTCTCTGAGTATGTAA 0.517 10 118 DCAF8 50717 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 160209956 160209956 + Missense_Mutation SNP C C A TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 GGAGTAATGACCAGTGTCCTC 0.537 8 21 CNTN2 6900 hgsc.bcm.edu;broad.mit.edu 37 1 205042816 205042816 + Missense_Mutation SNP C C T TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 CATGGCAGTCCGCCCAGCACC 0.607 8 75 HCK 3055 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 30659555 30659555 + Silent SNP C C T rs112610391 TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 GTCCTGTGTACGTGCCGGATC 0.582 9 84 HIRA 7290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 19365445 19365445 + Missense_Mutation SNP C C G TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 CCACCACAGGCTCTGTGCAAG 0.582 86 161 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 21241933 21241933 + Missense_Mutation SNP C C T rs149357946 by1000genomes TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 TCATAGGTTGCGCTGACAGAA 0.453 44 84 OTOF 9381 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 26688866 26688866 + Missense_Mutation SNP G G A TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 TCCTTGTCGCGGATGTCAGTC 0.587 9 87 ABCG5 64240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 44050052 44050052 + Silent SNP G G A rs139361486 TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 TCTCCTGGTCGCTGACAGCTC 0.567 15 27 SLC1A4 6509 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 65248050 65248050 + Missense_Mutation SNP C C T TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 CACCAGGGACCGGACCACCAC 0.552 38 109 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113113 209113113 + Missense_Mutation SNP G G A rs121913499 TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 TAAGCATGACGACCTATGATG 0.398 19 60 CXCR2 3579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 219000218 219000218 + Missense_Mutation SNP G G A TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 GTTCTGCTACGGATTCACCCT 0.567 101 248 PLCD4 84812 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 219500985 219500985 + Silent SNP G G C TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 CATACTGGGGGCAGACACTAT 0.418 82 183 IRS1 3667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 227660233 227660233 + Silent SNP C C T TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 TGAGGTTCACCCGGGTGAAGG 0.647 46 104 SENP2 59343 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 185316806 185316806 + Missense_Mutation SNP A A G TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 CAACATGCTGAAACTGGGTGA 0.368 17 44 TP63 8626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 189586404 189586404 + Missense_Mutation SNP G G T rs121908841 TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 TTTGAGGCCCGGATCTGTGCT 0.488 8 75 BOD1L1 259282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 13602746 13602746 + Silent SNP T T G TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 TATTTTCATTTGCATTCATGA 0.458 10 71 KLF3 51274 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 38690343 38690343 + Silent SNP G G A TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 TGGACCTCACGGTGAACAAGC 0.567 9 81 PDZD2 23037 hgsc.bcm.edu;broad.mit.edu 37 5 32072325 32072325 + Missense_Mutation SNP C C G TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 GTCCCTGGCCCCTTGTCAGAC 0.547 12 133 PCDHGA7 56108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140762775 140762775 + Silent SNP G G A TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 CGCGGTGTCTGGTAAACTTTA 0.483 9 86 AUTS2 26053 hgsc.bcm.edu;broad.mit.edu 37 7 70227916 70227916 + Missense_Mutation SNP T T C TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 GGGCCGATTGTCCCCAAGATA 0.537 21 311 ESRP1 54845 hgsc.bcm.edu;broad.mit.edu 37 8 95680362 95680362 + Missense_Mutation SNP G G A TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 AACAGGGGACGCTTTTGTCCT 0.483 7 99 ELAVL2 1993 hgsc.bcm.edu;broad.mit.edu 37 9 23701564 23701564 + Nonsense_Mutation SNP G G A TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 GCCTCAATTCGCTTGTCAAAT 0.443 10 137 SLC35F5 80255 broad.mit.edu;ucsc.edu 37 2 114480706 114480706 + Missense_Mutation SNP A A G TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 GTCAGCTATTATGGACAGAGG 0.308 40 100 DNAH11 8701 broad.mit.edu;ucsc.edu 37 7 21640731 21640731 + Missense_Mutation SNP T T C TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 AAAGTGAGCTTGTTAACCATA 0.353 12 38 RCBTB1 55213 broad.mit.edu;ucsc.edu 37 13 50134077 50134077 + Missense_Mutation SNP T T C rs147650879 byFrequency TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 GCCAGAGCCATTGAATGATGT 0.413 54 130 TTC12 54970 broad.mit.edu;ucsc.edu 37 11 113211422 113211422 + Missense_Mutation SNP T T A TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 CACAATGGATTTAGTATCATC 0.438 7 67 ZDHHC14 79683 broad.mit.edu;ucsc.edu 37 6 158066844 158066844 + Silent SNP C C T TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 CCTACTTGATCAGCTCCAACC 0.527 6 24 GUCA1A 2978 broad.mit.edu;ucsc.edu 37 6 42146546 42146546 + Missense_Mutation SNP C C T TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 CCAGGCCATTCGCGCCATTAA 0.582 35 386 TP53 7157 broad.mit.edu;hgsc.bcm.edu 37 17 7578213 7578213 + Frame_Shift_Del DEL A A - TCGA-P5-A5EZ-01A-11D-A27K-08 TCGA-P5-A5EZ-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a028455b-b422-4e51-ae03-779cfd854c13 b40a9126-a33f-4ad3-b610-5a6a51bcbd25 CACTATGTCGAAAAGTGTTTC 0.532 45 31