Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ITIH5 80760 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 7679258 7679258 + Silent SNP C C T TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 ATGCGATGCCCGCGCTCTCCA 0.657 61 128 TEAD1 7003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 12883803 12883803 + Missense_Mutation SNP A A G TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 TCAGGTAGGAATGAATTGATA 0.403 7 61 OR4C16 219428 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55339694 55339694 + Missense_Mutation SNP C C T TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 TATTTTTTTGCGTCTCTACTT 0.373 47 87 POU2AF1 5450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 111229622 111229622 + Missense_Mutation SNP G G A TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 GGCCGGGGCTGGGGCTTGCTC 0.632 18 33 A2ML1 144568 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 8976368 8976368 + Missense_Mutation SNP G G A TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 CGGGTGTCGGGAGTTGGAAAT 0.527 75 126 SPATA13 221178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 24858319 24858319 + Missense_Mutation SNP C C G TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 TGGATGACAACGgtagtgagg 0.493 19 12 PLK1 5347 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 23695207 23695207 + Missense_Mutation SNP C C G TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 AACCCCGTGGCCGCCTCCCTC 0.557 57 579 GRAMD1A 57655 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 35504508 35504508 + Silent SNP C C T TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 GGGCAGCTGACCGCAGCCAGG 0.662 26 25 CIC 23152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42791828 42791828 + Nonsense_Mutation SNP G G A TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 GCGAGTGGTGGTATGCCCTGG 0.617 37 54 CIC 23152 hgsc.bcm.edu;broad.mit.edu 37 19 42796879 42796879 + Nonsense_Mutation SNP C C T TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 CCAGCCATCCCAGGCCCCCCC 0.682 6 85 HRNR 388697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 152191766 152191766 + Missense_Mutation SNP C C T TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 GGACCCATGTCGGACACGGCT 0.602 38 85 SEC16B 89866 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 177936856 177936856 + Silent SNP G G A TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 CTTCGTAATAGTCAACTCCAG 0.517 9 68 NLRP3 114548 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 247588165 247588165 + Missense_Mutation SNP G G A TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 CTCTTTGGCTGCAGATGGAAT 0.582 11 30 HADHA 3030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 26426943 26426943 + Missense_Mutation SNP T T A TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 TTTGAACACTTGTTGCTGTCC 0.483 166 359 DNAH6 1768 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 84784902 84784902 + Nonsense_Mutation SNP T T G TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 AACACTGTGTTATCAGTTCCT 0.343 46 118 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 ATAAGCATGACGACCTATGAT 0.393 21 51 EPHA4 2043 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 222301821 222301821 + Missense_Mutation SNP G G T TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 CATGTACTCTGTTATGATCAT 0.378 36 61 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178917478 178917478 + Splice_Site SNP G G A TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 TTTATTAAAGGTTTTGCTATC 0.338 33 42 TSSK1B 83942 hgsc.bcm.edu;broad.mit.edu 37 5 112770050 112770050 + Missense_Mutation SNP G G A rs139028259 by1000genomes TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 CTGTCATCCCGCAGGCAGCGC 0.577 4 68 PCDHAC1 56135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140306487 140306487 + Missense_Mutation SNP T T C TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 GATGGTGGGCTGTGGGGTGGC 0.647 15 66 UTRN 7402 hgsc.bcm.edu;broad.mit.edu 37 6 144835787 144835787 + Splice_Site SNP G G T TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 TATAATTAGCGTTTAGTATCT 0.388 11 117 PSPH 5723 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 56084931 56084931 + Missense_Mutation SNP A A C TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 TCTTACCGTTAAAGTAGAATT 0.383 40 33 PKN3 29941 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 131479035 131479035 + Missense_Mutation SNP C C G TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 GCCTGTACTGCGAGAAGCGGA 0.602 18 171 GPR15 2838 broad.mit.edu;ucsc.edu 37 3 98251295 98251295 + Missense_Mutation SNP G G A TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 GTGGCCAGTCGTATCCAGGAA 0.522 8 64 CEP63 80254 broad.mit.edu;ucsc.edu 37 3 134277174 134277174 + Missense_Mutation SNP A A T TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 ACTGAGTTCAAGAATACAGAG 0.289 9 36 USP8 9101 broad.mit.edu;ucsc.edu 37 15 50769066 50769066 + Silent SNP G G C TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 AAACTGTCCTGCGCAATGAGC 0.393 30 70 NACA2 342538 broad.mit.edu;ucsc.edu 37 17 59668211 59668211 + Missense_Mutation SNP C C T TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 CTCTTGTAGACGTCCAGTTTT 0.443 80 202 ZFX 7543 broad.mit.edu;hgsc.bcm.edu 37 X 24229107 24229109 + In_Frame_Del DEL AAG AAG - TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 TTCAGAACTCAAGAAACACGTGG 0.424 15 52 NOTCH1 4851 broad.mit.edu 37 9 139412283 139412285 + In_Frame_Del DEL GTT GTT - TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 AGACGCACTCGTTGACGTCGATC 0.66 13 113 CIC 23152 broad.mit.edu 37 19 42795615 42795615 + Frame_Shift_Del DEL A A - TCGA-P5-A5F0-01A-11D-A289-08 TCGA-P5-A5F0-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1edcbd6b-d64f-453b-8e9e-c1fbf6d99cf4 a5d89ce8-081f-4b72-993d-47b28b7bf6e3 CCCACCCCCCAAAGGTGAGAC 0.617 18 120