Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PTPRE 5791 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 129869084 129869084 + Missense_Mutation SNP G G A TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 ATTGACAAATGTCCGGATCAT 0.522 10 38 OR5T3 390154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 56020474 56020474 + Missense_Mutation SNP G G A TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 AAGGCAAAAGGCCTTCTCTAC 0.423 29 138 CNOT2 4848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 70726595 70726595 + Missense_Mutation SNP C C G TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 GAATGAATAACTCCTTATCAA 0.318 31 66 PCDH17 27253 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 58207144 58207144 + Missense_Mutation SNP G G C TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 CCCCTCACCAGCGCACATGAC 0.642 7 50 SLC12A3 6559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 56921899 56921899 + Silent SNP G G A TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 AGAACTGGCAGTCGGCTCACC 0.587 11 104 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 GCACAAACACGCACCTCAAAG 0.542 28 12 MPO 4353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 56355276 56355276 + Silent SNP G G A TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 GGGCCCGGCCGTTGTCTTGGA 0.652 43 59 SCN4A 6329 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 62036690 62036690 + Missense_Mutation SNP G G A TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 ACCAGGCTGAGGGTGACGATG 0.562 13 55 IL27RA 9466 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 14157389 14157389 + Nonsense_Mutation SNP G G A TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 AAACTCAACTGGGTCCGGCTT 0.632 60 124 PADI2 11240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 17418910 17418910 + Silent SNP G G A TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 CACTCTCCACGTAGAACACGC 0.577 30 41 ARHGEF2 9181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 155920805 155920805 + Missense_Mutation SNP G G A TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 TCACTCTCCCGGAGCCGGGCC 0.706 17 15 IL1RL1 9173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 102968090 102968090 + Silent SNP C C T rs112596146 TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 AGTTTGCCTACGAGCAGGAGG 0.527 33 60 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 ATAAGCATGACGACCTATGAT 0.393 23 38 HDAC4 9759 hgsc.bcm.edu;broad.mit.edu 37 2 240111713 240111713 + Missense_Mutation SNP C C T TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 GTGGTCCAGGCGCAGGTCCAT 0.667 7 61 DPPA2 151871 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 109023364 109023364 + Missense_Mutation SNP G G A TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 TTCTATGCCTGGGGATGGGAA 0.473 41 48 SERPINI1 5274 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 167508340 167508340 + Missense_Mutation SNP A A G TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 TTCAGTCAAAATGTAGCCGTG 0.363 13 58 PPARGC1A 10891 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 23830190 23830190 + Missense_Mutation SNP C C T TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 TTGCTGTTGACAAATACTCTT 0.408 40 99 GALNTL6 442117 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 173873279 173873279 + Missense_Mutation SNP A A G TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 TCCACGGGGGACATCTCTGCC 0.567 37 82 PCDHGA2 56113 hgsc.bcm.edu;broad.mit.edu 37 5 140719479 140719479 + Missense_Mutation SNP T T A TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 GATGCTACATTCCATGAAATT 0.428 18 275 IRF4 3662 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 407544 407544 + Silent SNP C C T TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 CAGAACACATCAGCAATCCAG 0.358 18 54 FKBP5 2289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 35547956 35547956 + Missense_Mutation SNP C C A TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 AACCAGGACACTATCTTCCCA 0.433 27 163 FAM129B 64855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 130293979 130293979 + Missense_Mutation SNP C C T TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 AATCTCATGGCGCATGCTGTT 0.577 22 105 NOTCH1 4851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 139396809 139396809 + Missense_Mutation SNP G G A TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 GGGAACCAGAGCTGGCCATGC 0.672 11 60 PHF16 9767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 46887419 46887419 + Missense_Mutation SNP G G A TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 TGATGAAGATGTGATCTGTGA 0.448 27 61 GUCY2F 2986 hgsc.bcm.edu;broad.mit.edu 37 X 108718947 108718947 + Missense_Mutation SNP C C A TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 GCGCAGCAACCTCAGGCAGGG 0.517 15 205 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76920192 76920193 + Frame_Shift_Ins INS - - TCATCAT TCGA-P5-A5F2-01A-11D-A289-08 TCGA-P5-A5F2-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 37d51361-c4ad-4907-b18f-66991749ba1f 666497c6-2a20-4949-9a09-13e17e2a00f9 CTTCTTCTGGCTCATCATCTGA 0.351 27 71