Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OR5D18 219438 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55587452 55587452 + Nonsense_Mutation SNP T T G TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 TCCTTTTTATTAGCTGTGATG 0.443 71 118 PDE2A 5138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 72292936 72292936 + Missense_Mutation SNP C C A TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 CAGGGTCGGGCAGTCAATTTT 0.577 10 79 ANO2 57101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 5708718 5708718 + Missense_Mutation SNP G G A TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 CCACTGCTCTGGATGTTTCGA 0.473 25 129 SLCO1B3 28234 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 21028269 21028269 + Silent SNP T T C TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 CCATACCATTTTTTTTCTTGC 0.358 32 65 KRT73 319101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 53010008 53010008 + Missense_Mutation SNP C C G TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 TCCAGCCTCACCCTGTCCCCA 0.612 27 130 ITGA5 3678 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 54795993 54795993 + Missense_Mutation SNP C C G TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 CCTGAGTACTCAGCCTCTGGA 0.587 20 62 PTPRB 5787 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 70949900 70949900 + Silent SNP G G A TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 TCTGAGGCCGGCAATGCAGGT 0.458 9 29 ARID4A 5926 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 58831983 58831983 + Missense_Mutation SNP G G C TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 GGTACCTGTAGTATAATTGTA 0.378 27 50 FLYWCH1 84256 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 2983273 2983273 + Silent SNP G G A TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 ACGGCTGCCGGAGCCGGGCCA 0.667 6 24 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577120 7577120 + Missense_Mutation SNP C C A rs28934576 by1000genomes TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 GGCACAAACACGCACCTCAAA 0.542 28 3 KRT15 3866 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 39673186 39673186 + Silent SNP G G A TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 CAGCCTCAACGCCCTGGCGCA 0.612 24 118 TMC8 147138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 76134132 76134132 + Missense_Mutation SNP C C T rs149327841 by1000genomes TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 CTGGCTGGAACGGGAGGAGTT 0.647 17 130 RNF126 55658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 651708 651708 + Missense_Mutation SNP G G C TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 CGGGACGGATGGTCTCTCTCC 0.721 14 24 ZNF430 80264 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 21216300 21216300 + Silent SNP T T C TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 TAGAATTTTCTCTGGAGGAGT 0.438 21 113 PLCB4 5332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 9389339 9389339 + Missense_Mutation SNP A A G TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 TGGCTACTTGAAGACACATGC 0.373 6 15 LARGE 9215 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 33670458 33670458 + Silent SNP G G A TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 CAGCAAAGCCGTAGCGGCGGG 0.542 29 165 PRR5 55615 hgsc.bcm.edu;ucsc.edu 37 22 45132730 45132730 + Missense_Mutation SNP C C T TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 AGCTACAACACGCCTCTGCTG 0.692 33 127 DQX1 165545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 74750021 74750021 + Missense_Mutation SNP A A G TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 TGGCTCTGCAATCTGTCTCCT 0.522 53 83 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113113 209113113 + Missense_Mutation SNP G G A rs121913499 TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 TAAGCATGACGACCTATGATG 0.398 22 48 SMC4 10051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 160122126 160122126 + Missense_Mutation SNP A A C TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 GAAGGGGATGATTATGAAGTC 0.338 6 19 KLHL7 55975 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 23213883 23213883 + Missense_Mutation SNP C C G TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 GTTGTCGATACTTGTGGAGCA 0.408 17 72 ZNF117 51351 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 64441776 64441776 + Missense_Mutation SNP G G A TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 TAAATGTTTAGCTACCATCTC 0.423 21 120 ZKSCAN1 7586 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 99631511 99631511 + Silent SNP T T C TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 AGAAACCTTATGAATGTAATG 0.502 106 164 GATA4 2626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 11606556 11606556 + Missense_Mutation SNP G G A TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 CAAGATGAACGGCATCAACCG 0.637 12 73 C8orf47 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 99102249 99102249 + Missense_Mutation SNP G G A TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 GAGGACCAACGCATTGAAGGT 0.483 24 65 PALM2-AKAP2 445815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 112918731 112918731 + Missense_Mutation SNP A A G TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 ATGGAAGACTATGAGACACAC 0.537 15 78 DHRSX 207063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 2161263 2161263 + Missense_Mutation SNP T T C TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 GTGGGGTGAGTAGCAGGCACT 0.642 8 31 CYLC1 1538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 83116196 83116196 + Silent SNP T T C TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 GGGAAATGTCTCTTCCAAGGT 0.313 10 41 BTK 695 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 100615678 100615678 + Silent SNP C C T TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 GGGCCACAACCTTTTTCAGCT 0.448 17 115 MUM1L1 139221 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 105449981 105449981 + Missense_Mutation SNP T T C TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 GGAAACAAAGTCATTACAAAA 0.383 12 14 IFT52 51098 broad.mit.edu;ucsc.edu 37 20 42264576 42264576 + Missense_Mutation SNP C C G TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 GGCTCACGAGCAGCTAAATGT 0.488 8 58 PEX5 5830 broad.mit.edu;ucsc.edu 37 12 7362771 7362771 + Silent SNP C C T rs148914171 byFrequency TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 GGGCAGCCGACGCGCGGGATC 0.627 16 118 PRDM11 56981 broad.mit.edu;ucsc.edu 37 11 45117366 45117366 + Missense_Mutation SNP A A G TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 aatgttgaagatggcagagcc 0.507 27 53 PKP3 11187 broad.mit.edu;ucsc.edu 37 11 397651 397651 + Missense_Mutation SNP G G A rs148819261 TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 CGATGCAGCCGCCAAGAAGCA 0.637 8 57 KRTAP10-7 386675 broad.mit.edu;ucsc.edu 37 21 46021254 46021254 + Missense_Mutation SNP G G T TCGA-P5-A5F4-01A-11D-A289-08 TCGA-P5-A5F4-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58cdd54d-f0d7-4f7a-8467-d83fec67b803 d867db6f-d0aa-468c-8f1e-6397da80ea18 CGTCTGCTGTGTGCCCACCTG 0.652 44 222