Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count CNNM1 26507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 101124220 101124220 + Missense_Mutation SNP A A G TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c CGCTTTGAAAATGGAGCCTTT 0.423 9 17 ACACB 32 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 109616926 109616926 + Missense_Mutation SNP C C G TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c GCCCATCTTTCTCATGAAGCT 0.562 17 31 ACSF3 197322 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 89180794 89180794 + Missense_Mutation SNP A A G TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c GTGCTGGAGAAGTGGAAGAAC 0.647 33 104 MED24 9862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 38188968 38188968 + Missense_Mutation SNP G G T TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c TGAGCCCCACGAAGCAAGCTT 0.577 23 24 ARRDC5 645432 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 4891396 4891396 + Missense_Mutation SNP G G C TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c CCCTCGTACTGTATGTGGGCA 0.587 13 39 PPP1R13L 10848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 45895364 45895364 + Missense_Mutation SNP G G A TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c CACAGCAGGGGCCTGCTCCAT 0.687 12 59 EXTL1 2134 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 26349229 26349229 + Missense_Mutation SNP G G A TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c TCCCTTCTCCGCCTGGCATTG 0.657 31 11 G0S2 50486 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 209849305 209849305 + Silent SNP C C T TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c CGGTCCTCGGCGGCCGGGCCC 0.667 13 28 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 237957283 237957283 + Silent SNP C C T TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c GGGATAGACTCGTAATCAACA 0.363 16 21 LAMA5 3911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 60888747 60888747 + Silent SNP G G A TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c AGACGAAGTCGTCTGGCCGCA 0.662 76 96 FZD7 8324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 202900715 202900715 + Missense_Mutation SNP C C T TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c GTCCCTCTTCCGTATCCGCAC 0.612 41 103 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c ATAAGCATGACGACCTATGAT 0.393 25 39 ECT2 1894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 172501694 172501694 + Missense_Mutation SNP C C T TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c TCATGCTTTTCTCAAGGTAAT 0.274 18 23 ABCE1 6059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 146044497 146044497 + Missense_Mutation SNP G G A TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c ATGGCAGCTCGAGTTGTCAAA 0.383 41 33 PHF3 23469 hgsc.bcm.edu;broad.mit.edu 37 6 64423124 64423124 + Silent SNP C C G TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c GGTATATAGGCCCGCAGAATT 0.507 12 155 SLC26A4 5172 hgsc.bcm.edu;broad.mit.edu 37 7 107314667 107314667 + Silent SNP C C T TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c TGGCCCCCGACGAACACTTTC 0.433 5 85 SVEP1 79987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 113194246 113194246 + Missense_Mutation SNP A A G TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c GAACATATGTAGGATCCATCT 0.378 29 75 XPNPEP2 7512 broad.mit.edu;ucsc.edu 37 X 128879232 128879232 + Silent SNP A A T TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c CAGGCTTTACAGGGTCTGCAG 0.488 3 31 TACR3 6870 broad.mit.edu;ucsc.edu 37 4 104510918 104510918 + Missense_Mutation SNP G G A TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c ATTCCTGCGAGAGCAGCCATT 0.478 70 107 CREB3 10488 broad.mit.edu;ucsc.edu 37 9 35736644 35736644 + Missense_Mutation SNP A A C TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c CTCCCCCTGCAGGCAAATCTC 0.567 75 199 ITSN1 6453 broad.mit.edu;ucsc.edu 37 21 35183494 35183494 + Silent SNP G G A TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c AGCCCTCCACGACCCCTAATA 0.547 40 105 SLC1A7 6512 broad.mit.edu;hgsc.bcm.edu 37 1 53553683 53553684 + Frame_Shift_Del DEL AG AG - TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c CCGCAGGCTCAGACATTGGTCT 0.663 18 20 CTNNB1 1499 broad.mit.edu;hgsc.bcm.edu 37 3 41275294 41275294 + Frame_Shift_Del DEL T T - TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c GCAGTTCGCCTTCACTATGGA 0.493 105 164 SGK223 157285 broad.mit.edu;hgsc.bcm.edu 37 8 8234817 8234819 + In_Frame_Del DEL TCA TCA - TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c GCAGGTTCCTTCATGAGGGAGCA 0.68 15 26 KAT6B 23522 broad.mit.edu;hgsc.bcm.edu 37 10 76784946 76784949 + Frame_Shift_Del DEL ACAA ACAA - TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c GGAAGAAAAGACAAACAGAGGAAG 0.451 14 37 RBBP6 5930 broad.mit.edu;hgsc.bcm.edu 37 16 24567746 24567747 + Frame_Shift_Ins INS - - A TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c CACTGGAAAATATGCAATACCA 0.401 14 50 ZACN 353174 broad.mit.edu;hgsc.bcm.edu 37 17 74075804 74075805 + Frame_Shift_Ins INS - - CC TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c ATACACAATGTCCTCCATGCTG 0.569 21 55 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42797776 42797777 + Frame_Shift_Del DEL GC GC - TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c CTTCAGACTGGCGCGTCCCTGG 0.649 10 7 CIC 23152 broad.mit.edu 37 19 42798989 42798990 + Frame_Shift_Ins INS - - A rs148444899 TCGA-QH-A65Z-01A-11D-A29Q-08 TCGA-QH-A65Z-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d0a802c3-cb5f-48d0-b06f-8a526841caf2 d2f44aee-6bf6-4683-a741-75833c96b28c AGGCCACAGCCGCCTTCCAGGC 0.574 8 71