Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AADAC	13	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	151545693	151545693	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	AADAC	NM_001086	exon5	c.T933G	p.Y311X	AAAATATCCAGGG	.	55.0	17.0	65.0	0.0	.	280
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57204730	57204730	+	Silent	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	AASDH	NM_181806	exon15	c.G3135T	p.G1045G	CACTTTCCCATCA	.	222.0	54.0	201.0	0.0	.	94
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48318705	48318705	+	Silent	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ABCA13	NM_152701	exon18	c.T7914A	p.I2638I	AGAAATTGCTGAA	.	74.0	19.0	65.0	0.0	.	521
ABCC8	6833	broad.mit.edu;mdanderson.org	37	11	17430046	17430046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ABCC8	NM_000352	exon23	c.G2713T	p.G905C	TGGTGCCATCCTT	.	47.0	6.0	28.0	1.0	.	91
ACVR1B	91	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52374781	52374781	+	Silent	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ACVR1B	NM_020328	exon4	c.G609T	p.V203V	CACAGTGGCCCGA	.	125.0	36.0	100.0	1.0	.	1015
ACVR1B	91	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52374782	52374782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ACVR1B	NM_020328	exon4	c.G610T	p.A204S	ACAGTGGCCCGAA	.	122.0	34.0	100.0	0.0	.	1015
AGAP7	653268	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	51464927	51464927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	NM_001077685	exon7	c.C1529T	p.S510L	ATAGATGACATAA	.	251.0	40.0	220.0	1.0	.	.
AKAP1	8165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	55187484	55187484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	AKAP1	NM_001242902	exon4	c.G1813T	p.V605F	AAGAAGGTCGACC	.	60.0	17.0	59.0	0.0	.	227
AKAP4	8852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49955717	49955717	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	AKAP4	NM_003886	exon6	c.T2451A	p.S817R	TCCTACACTGTAC	.	73.0	32.0	67.0	1.0	.	540
AKAP6	9472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	33293092	33293092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	AKAP6	NM_004274	exon13	c.A6073G	p.N2025D	GAACAAAACGGAA	.	36.0	7.0	32.0	0.0	.	733
ALAS1	211	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52240032	52240032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ALAS1	NM_000688	exon7	c.G978A	p.M326I	TAAGATGATGCCA	.	131.0	43.0	123.0	2.0	.	93
ALB	213	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74270094	74270094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ALB	NM_000477	exon1	c.A50G	p.Y17C	CGGCTTATTCCAG	.	361.0	63.0	350.0	1.0	.	96
ALDH3A1	218	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	19645392	19645392	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ALDH3A1	NM_001135168	exon4	c.C614G	p.T205S	ACAGGGGTCAGGT	.	124.0	29.0	90.0	1.0	.	228
ANKRD30B	374860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14850260	14850260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ANKRD30B	NM_001145029	exon35	c.T3086C	p.L1029S	ATATATTAAAAGA	.	348.0	80.0	406.0	0.0	.	24
APOPT1	84334	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	104040498	104040498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	NM_032374	exon3	c.A415G	p.T139A	CTGAGAACTGAAT	.	587.0	149.0	621.0	0.0	.	.
ASIC4	55515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	220379823	220379823	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	NM_182847	exon1	c.C758A	p.S253X	GGCATTCGGCACT	.	77.0	21.0	54.0	0.0	.	.
ASXL1	171023	broad.mit.edu;bcgsc.ca	37	20	31023639	31023639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ASXL1	NM_015338	exon12	c.C3124T	p.P1042S	TCTGCCCCACTGT	.	77.0	6.0	64.0	0.0	.	2057
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	16738381	16738381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	BNC2	NM_017637	exon2	c.G106T	p.G36W	CAACCCCACAACA	.	176.0	59.0	168.0	0.0	.	92
C19orf77	284422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3474916	3474916	+	Silent	SNP	T	T	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	NM_001136503	exon4	c.A318C	p.G106G	GCTCTCTCCTTCC	.	227.0	68.0	254.0	0.0	.	.
C3P1	388503	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10166314	10166314	+	RNA	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	C3P1	.	.	.	.	CTCTATGATGACG	.	223.0	67.0	152.0	0.0	.	90
C7orf72	100130988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50135895	50135895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	C7orf72	NM_001161834	exon1	c.C214T	p.P72S	TATCCCCCTTCAG	.	285.0	61.0	267.0	0.0	.	23
CACNG4	27092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65026740	65026740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CACNG4	NM_014405	exon4	c.G604T	p.A202S	GTCCTGGCTGTAA	.	77.0	28.0	73.0	0.0	.	90
CBWD5	220869	hgsc.bcm.edu;broad.mit.edu	37	9	70484455	70484455	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CBWD5	NM_001024916	exon3	c.258delA	p.K86fs	TAAGGATTTCTCC	.	3148.0	257.0	3269.0	0.0	.	22
CCDC6	8030	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61592392	61592392	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CCDC6	NM_005436	exon3	c.A473T	p.E158V	TCTAGTTCGGCTT	.	308.0	77.0	266.0	2.0	.	686
CDC14B	8555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	99285642	99285642	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CDC14B	NM_033331	exon11	c.G1146C	p.E382D	TCCATTCTCCTGC	.	222.0	57.0	230.0	0.0	.	228
CDC42BPA	8476	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	227316906	227316908	+	In_Frame_Del	DEL	GCA	GCA	-	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	GCA	GCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CDC42BPA	NM_003607	exon11	c.1415_1417del	p.472_473del	AATACTGCAGAGC	.	426.0	107.0	584.0	0.0	.	549
CDH11	1009	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	65038672	65038672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CDH11	NM_001797	exon3	c.C101T	p.S34F	TGGAAGGAGGGCC	.	54.0	12.0	37.0	1.0	.	852
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46829366	46829366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CELSR1	NM_014246	exon5	c.C4535T	p.T1512M	ACGGTCGTTGTTG	.	33.0	9.0	33.0	0.0	.	525
CEP152	22995	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49048388	49048388	+	Silent	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CEP152	NM_014985	exon20	c.T3057C	p.C1019C	GTCTAGACAAGTT	.	201.0	54.0	174.0	1.0	.	70
CHRNA9	55584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40351066	40351066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CHRNA9	NM_017581	exon4	c.A533G	p.Y178C	GGACCTACAATGG	.	197.0	50.0	197.0	1.0	.	96
CLCA2	9635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	86916353	86916353	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CLCA2	NM_006536	exon12	c.A2092T	p.S698C	AGCATAAGCACCC	.	129.0	14.0	165.0	0.0	.	155
CNKSR2	22866	ucsc.edu;bcgsc.ca	37	X	21624911	21624911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CNKSR2	NM_014927	exon19	c.A2059G	p.S687G	AGTGAGAGTGACA	.	48.0	5.0	33.0	0.0	.	625
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32151294	32151294	+	Silent	SNP	T	T	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	COL16A1	NM_001856	exon29	c.A1962C	p.P654P	TCCGGATGGGCCA	.	162.0	36.0	107.0	0.0	.	98
COL4A1	1282	ucsc.edu;bcgsc.ca	37	13	110828996	110828996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	COL4A1	NM_001845	exon35	c.A2945G	p.Q982R	CCTGCCTGCCCGT	.	39.0	4.0	55.0	0.0	.	654
CRY1	1407	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	107386611	107386611	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	CRY1	NM_004075	exon12	c.A1715C	p.D572A	TGTGTGTCCTCTT	.	102.0	38.0	132.0	1.0	.	93
DFNB59	494513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179325171	179325171	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	DFNB59	NM_001042702	exon6	c.G764C	p.R255T	TTGAAAGAAGTAT	.	105.0	20.0	126.0	0.0	.	22
DGKG	1608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185993350	185993350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	DGKG	NM_001346	exon10	c.G896A	p.G299D	CACAGGCCTTGCT	.	54.0	17.0	46.0	0.0	.	714
DROSHA	29102	ucsc.edu;bcgsc.ca	37	5	31448654	31448654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	DROSHA	NM_013235	exon22	c.G2882A	p.R961K	CTTTACCTCGAGG	.	45.0	4.0	40.0	0.0	.	227
EIF2B4	8890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27590024	27590024	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	EIF2B4	NM_172195	exon9	c.G990A	p.E330E	AATCTTCTCTTGC	.	81.0	22.0	79.0	0.0	.	90
ELAVL1	1994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8038704	8038704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ELAVL1	NM_001419	exon4	c.G335T	p.G112V	GGGAGCCCGCTGA	.	125.0	38.0	120.0	0.0	.	90
ELMSAN1	91748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74189521	74189521	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	NM_194278	exon10	c.G2604A	p.V868V	GAACTCCACGCAC	.	116.0	36.0	87.0	0.0	.	.
EPHB1	2047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134920367	134920367	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	EPHB1	NM_004441	exon12	c.A2182T	p.I728F	AGGGGCATCGCTG	.	153.0	32.0	133.0	0.0	.	1492
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56759928	56759928	+	Silent	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	EXOC1	NM_018261	exon15	c.G1935A	p.R645R	CAAAAGGAACTTT	.	76.0	23.0	78.0	0.0	.	950
FAM98A	25940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33810097	33810097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	FAM98A	NM_015475	exon8	c.A1303G	p.S435G	ATCCACTTCCTGT	.	116.0	32.0	108.0	0.0	.	91
FBF1	85302	broad.mit.edu;bcgsc.ca	37	17	73919636	73919636	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	FBF1	NM_001080542	exon13	c.C1010G	p.P337R	TTCCTGGGCTGGA	.	103.0	22.0	106.0	0.0	.	205
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127727761	127727761	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	FBN2	NM_001999	exon11	c.G1553C	p.R518P	TCACATCGGTAGC	.	136.0	24.0	171.0	0.0	.	146
FKBP15	23307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	115948581	115948581	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	FKBP15	NM_015258	exon15	c.G1446A	p.Q482Q	AACGGGCTGCAGC	.	89.0	26.0	76.0	0.0	.	25
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33359250	33359250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	FMN1	NM_001103184	exon1	c.G836T	p.G279V	CGAAGCCCACTGA	.	125.0	25.0	109.0	0.0	.	23
FOXS1	2307	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	30432921	30432921	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	FOXS1	NM_004118	exon1	c.G425C	p.G142A	GGGACTCCTGGGT	.	33.0	12.0	19.0	0.0	.	69
FPR3	2359	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	52327451	52327451	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	FPR3	NM_002030	exon2	c.G450C	p.W150C	ACTCTGGATTTTC	.	162.0	11.0	141.0	0.0	.	501
FRG1	2483	broad.mit.edu;bcgsc.ca	37	4	190876266	190876266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	FRG1	NM_004477	exon5	c.C392A	p.A131E	CAGATGCAATTGG	.	651.0	27.0	711.0	1.0	.	90
GFOD1	54438	broad.mit.edu;ucsc.edu	37	6	13470848	13470848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	GFOD1	NM_001242629	exon2	c.A268G	p.R90G	TCTTCCTCTGATG	.	42.0	5.0	47.0	0.0	.	92
GKAP1	80318	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86403523	86403523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	GKAP1	NM_025211	exon5	c.A431G	p.H144R	TTTTTGTGCTCTT	.	52.0	14.0	70.0	0.0	.	90
GLYAT	10249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58477428	58477428	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	GLYAT	NM_201648	exon6	c.G702C	p.L234F	TTCCGGCAAGGTG	.	101.0	20.0	79.0	0.0	.	90
GPR124	25960	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	37693203	37693203	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	GPR124	NM_032777	exon13	c.C1965G	p.H655Q	CTTCCACAGCCAC	.	53.0	13.0	21.0	0.0	.	157
GRIK4	2900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120831700	120831700	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	GRIK4	NM_014619	exon15	c.A1957T	p.I653F	GTGCCCATTGAGT	.	76.0	22.0	81.0	0.0	.	92
GSTA4	2941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	52858985	52858985	+	Silent	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	GSTA4	NM_001512	exon2	c.G57T	p.V19V	CCATCTCACGGAC	.	55.0	15.0	42.0	0.0	.	90
GTF3C2	2976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27552031	27552031	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	GTF3C2	NM_001521	exon15	c.T1996G	p.C666G	TGTAGGGAAGCAG	.	97.0	25.0	65.0	0.0	.	92
GUCY2C	2984	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14774139	14774139	+	Silent	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	GUCY2C	NM_004963	exon23	c.C2613A	p.I871I	ATCACCGATGGTT	.	153.0	46.0	127.0	1.0	.	338
HCCS	3052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	11139892	11139892	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	HCCS	NM_001122608	exon7	c.G769C	p.D257H	GTATGGGACAGAA	.	32.0	15.0	33.0	0.0	.	226
HHIP	64399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	145579960	145579960	+	Missense_Mutation	SNP	C	C	T	rs149715142		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	HHIP	NM_022475	exon3	c.C491T	p.A164V	CAACTGCGGATGA	.	99.0	16.0	126.0	1.0	C|1.000;T|0.000	283
HIST1H3B	8358	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	26032209	26032209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	HIST1H3B	NM_003537	exon1	c.G80A	p.R27H	CTCTTGCGAGCAG	.	29.0	10.0	22.0	0.0	.	92
IGSF3	3321	broad.mit.edu;bcgsc.ca	37	1	117158700	117158700	+	Splice_Site	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	IGSF3	NM_001542	exon4	c.421+2T>A	.	CTCCTTACCCACT	.	342.0	75.0	295.0	1.0	.	92
IL12A	3592	broad.mit.edu;bcgsc.ca	37	3	159713218	159713218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	IL12A	NM_000882	exon7	c.C634T	p.P212S	ACTGTGCCACAAA	.	148.0	6.0	176.0	1.0	.	90
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76715138	76715138	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	IMPG1	NM_001563	exon10	c.A1001T	p.E334V	TAGACTTCCTCAC	.	358.0	79.0	344.0	0.0	.	93
INPPL1	3636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	71948271	71948271	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	INPPL1	NM_001567	exon26	c.C2983T	p.Q995X	CCGCACCAGCTGC	.	35.0	10.0	30.0	0.0	.	660
IQGAP1	8826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91017734	91017734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	IQGAP1	NM_003870	exon23	c.C2593T	p.P865S	GATCCTCCTATGG	.	101.0	28.0	92.0	0.0	.	950
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	35172168	35172168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ITSN1	NM_001001132	exon19	c.G2239A	p.A747T	TACCGGGCACTGT	.	31.0	8.0	44.0	0.0	.	94
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139819020	139819020	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	JHDM1D	NM_030647	exon10	c.1140-1G>T	.	TAACACCTAAATG	.	81.0	23.0	110.0	0.0	.	91
JKAMP	51528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	59965466	59965466	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	JKAMP	NM_016475	exon5	c.T480G	p.Y160X	TATCTATTACGCA	.	108.0	29.0	140.0	0.0	.	67
KCNJ4	3761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38823337	38823337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	KCNJ4	NM_004981	exon2	c.G801T	p.E267D	GCTGTCCTCGTCG	.	62.0	24.0	39.0	0.0	.	90
KCTD16	57528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	143586733	143586733	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	KCTD16	NM_020768	exon3	c.C456T	p.P152P	CTGCCCCCCTTCC	.	77.0	21.0	72.0	0.0	.	137
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55955862	55955862	+	Silent	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	KDR	NM_002253	exon24	c.C3300T	p.S1100S	ACCTAAGGAAAAT	.	120.0	28.0	139.0	0.0	.	2298
KIAA0146	23514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	48508456	48508456	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	KIAA0146	NM_001080394	exon9	c.C1181G	p.S394X	AAGATTCAGAAAA	.	119.0	31.0	156.0	0.0	.	68
KIAA1033	23325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	105509006	105509006	+	Silent	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	KIAA1033	NM_015275	exon5	c.A366T	p.G122G	AGAAGGAGGTAAG	.	404.0	80.0	562.0	1.0	.	91
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200973575	200973575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	KIF21B	NM_017596	exon7	c.G909T	p.L303F	ATTGCCCAAGGCC	.	95.0	23.0	59.0	0.0	.	96
KLF6	1316	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	3824157	3824157	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	KLF6	NM_001160125	exon2	c.G352T	p.E118X	AAAGTTCCTCGGA	.	181.0	54.0	149.0	1.0	.	1134
KRT72	140807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52979897	52979897	+	Missense_Mutation	SNP	C	C	A	rs34119325	byfrequency;alternate_allele	TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	KRT72	NM_001146225	exon9	c.G1405T	p.A469S	TTGAGGCGCCAAA	.	71.0	10.0	48.0	0.0	C|0.996;T|0.004	96
KRTAP7-1	337878	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	32201797	32201797	+	Silent	SNP	T	T	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	NM_181606	exon2	c.A220C	p.R74R	ATGGCCTATAGAA	.	98.0	25.0	69.0	0.0	.	.
LGALS9B	284194	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	20354888	20354888	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	LGALS9B	NM_001042685	exon10	c.C827G	p.A276G	ACCACAGCATTCT	.	297.0	83.0	234.0	0.0	.	23
LRRIQ1	84125	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85450424	85450424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	LRRIQ1	NM_001079910	exon8	c.C1853T	p.S618L	TAACATCAGAAAA	.	169.0	32.0	218.0	1.0	.	95
LRRTM4	80059	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	77745674	77745674	+	Silent	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	LRRTM4	NM_024993	exon3	c.T1321C	p.L441L	TCACCAAGAGGAT	.	158.0	55.0	141.0	1.0	.	94
LY75	4065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160665051	160665051	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	LY75	NM_002349	exon33	c.T4731A	p.D1577E	ATCTTCATCTTTT	.	140.0	40.0	163.0	0.0	.	90
MAN2B1	4125	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12776599	12776599	+	Silent	SNP	C	C	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	MAN2B1	NM_001173498	exon2	c.G180C	p.P60P	CATGTTCGGCTGC	.	100.0	33.0	67.0	1.0	.	94
MBD1	4152	broad.mit.edu;ucsc.edu;mdanderson.org	37	18	47800056	47800056	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	MBD1	NM_001204137	exon13	c.G1399T	p.E467X	CTGCTTCCTGCTT	.	95.0	26.0	83.0	1.0	.	228
MCCC2	64087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	70936898	70936898	+	Silent	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	MCCC2	NM_022132	exon11	c.T1068A	p.V356V	ATTAGTTACAGGT	.	93.0	19.0	88.0	0.0	.	23
MED24	9862	ucsc.edu;bcgsc.ca	37	17	38185195	38185195	+	Silent	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	MED24	NM_014815	exon14	c.A1293G	p.S431S	CTCCGGTGACTTA	.	43.0	5.0	53.0	1.0	.	187
MIR450A2	574505	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	133674546	133674546	+	RNA	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	.	.	.	.	ATATTATTGATAC	.	219.0	117.0	319.0	0.0	.	.
MME	4311	broad.mit.edu;bcgsc.ca	37	3	154832794	154832794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	MME	NM_007287	exon4	c.A208G	p.I70V	CGACTGATCCAAA	.	93.0	5.0	95.0	1.0	.	516
NFATC2	4773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50092056	50092056	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	NFATC2	NM_012340	exon4	c.A1474C	p.I492L	CCACTATCTTCTC	.	329.0	83.0	308.0	0.0	.	92
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	247582364	247582364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	NLRP3	NM_183395	exon1	c.G268T	p.D90Y	AAAAGAGATGAGC	.	19.0	10.0	16.0	0.0	.	674
NOS1AP	9722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162337003	162337003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	NOS1AP	NM_014697	exon10	c.G1267T	p.D423Y	AGGCGCGACTGCT	.	43.0	12.0	41.0	0.0	.	228
NRDE2	55051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	90764607	90764607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	NM_017970	exon8	c.C1663A	p.P555T	TACCTGGGTTGAT	.	52.0	10.0	29.0	0.0	.	.
NRG2	9542	ucsc.edu;bcgsc.ca	37	5	139235271	139235271	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	NRG2	NM_013982	exon7	c.T1306C	p.C436R	TCTTGCAGTAGGC	.	57.0	5.0	50.0	0.0	.	526
OR1S2	219958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57970715	57970715	+	Silent	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	OR1S2	NM_001004459	exon1	c.C939T	p.A313A	TCTCAGGGCACCT	.	101.0	27.0	115.0	0.0	.	69
OR51G1	79324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4944842	4944842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	OR51G1	NM_001005237	exon1	c.G728T	p.C243F	GAGACACAGGTGT	.	119.0	22.0	118.0	0.0	.	70
OSGEPL1	64172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190617632	190617632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	NM_022353	exon6	c.G1037A	p.C346Y	AAAGTGCACTGTG	.	271.0	60.0	312.0	0.0	.	.
P2RY1	5028	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	152553878	152553878	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	P2RY1	NM_002563	exon1	c.A307C	p.T103P	GTGCTGACTCTGC	.	156.0	39.0	110.0	1.0	.	500
PADI2	11240	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	17402191	17402191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PADI2	NM_007365	exon12	c.C1438T	p.P480S	GGATGGGGACAAA	.	46.0	15.0	28.0	1.0	.	208
PCDH9	5101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	66878891	66878891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PCDH9	NM_203487	exon5	c.C3610T	p.H1204Y	TGAAATGGCCTTC	.	365.0	82.0	345.0	0.0	.	96
PCDH9	5101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	67800949	67800949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PCDH9	NM_203487	exon2	c.G1624A	p.V542I	CAGTTACTGTAAA	.	141.0	39.0	164.0	0.0	.	96
PCDHA2	56146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140176834	140176834	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PCDHA2	NM_031495	exon1	c.A2285T	p.E762V	CTGGGGAGGACCC	.	225.0	59.0	201.0	0.0	.	94
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140208267	140208267	+	Silent	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PCDHA6	NM_018909	exon1	c.G591A	p.K197K	ATTAAAGAAATCC	.	74.0	20.0	82.0	0.0	.	92
PDE4DIP	9659	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	144946701	144946701	+	Missense_Mutation	SNP	C	C	T	rs77741848	byfrequency	TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PDE4DIP	NM_001198832	exon8	c.G758A	p.R253K	ACAAGCCTCTCCT	.	211.0	27.0	257.0	0.0	C|0.976;T|0.024	663
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31983740	31983740	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PDZD2	NM_178140	exon2	c.A956T	p.Q319L	ACTTCCAATCGAG	.	156.0	45.0	164.0	0.0	.	563
PDZRN3	23024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	73453362	73453362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PDZRN3	NM_015009	exon4	c.T1103C	p.M368T	AGGGCCATGATAT	.	170.0	50.0	178.0	2.0	.	232
PFKP	5214	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	3150974	3150974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PFKP	NM_002627	exon9	c.G952A	p.D318N	GCATTCGACAGGA	.	123.0	31.0	91.0	1.0	.	253
PGLYRP3	114771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153279733	153279733	+	Silent	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PGLYRP3	NM_052891	exon2	c.C66T	p.T22T	GACGATGGTGGGA	.	45.0	18.0	39.0	0.0	.	94
PMS1	5378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190718971	190718971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PMS1	NM_001128144	exon9	c.G973A	p.V325I	GAATCTGTTTTAA	.	133.0	28.0	159.0	0.0	.	1396
POLRMT	5442	ucsc.edu;bcgsc.ca	37	19	621784	621784	+	Silent	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	POLRMT	NM_005035	exon10	c.G1914T	p.T638T	GGTCAGCGTGGGC	.	31.0	9.0	28.0	0.0	.	92
POTEA	340441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	43152221	43152221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	POTEA	NM_001005365	exon2	c.G358A	p.D120N	CTGCTGGACAGAC	.	145.0	24.0	182.0	0.0	.	91
PPP2R5B	5526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64695804	64695804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PPP2R5B	NM_006244	exon6	c.G629A	p.R210H	GGGAGCGTGAGTA	.	89.0	19.0	75.0	0.0	.	660
PROCA1	147011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	27038628	27038628	+	Silent	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PROCA1	NM_152465	exon1	c.C51A	p.T17T	GGGCTCGGTCTTT	.	82.0	18.0	64.0	0.0	.	91
PRPS2	5634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12838904	12838904	+	Silent	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PRPS2	NM_001039091	exon6	c.A855G	p.K285K	AATGAAACACTGC	.	42.0	23.0	35.0	0.0	.	130
PTCHD3	374308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27702131	27702131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PTCHD3	NM_001034842	exon1	c.T1049C	p.F350S	TTGGTAAATTGAT	.	129.0	37.0	109.0	0.0	.	94
PXMP4	11264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	32298387	32298387	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	PXMP4	NM_007238	exon3	c.G349T	p.G117X	TTTCTCCAAACAC	.	163.0	40.0	161.0	0.0	.	90
RAD9B	144715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110959986	110959986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RAD9B	NM_152442	exon10	c.G895A	p.D299N	AGGTCAGATCTGA	.	141.0	33.0	126.0	0.0	.	228
RALGAPA2	57186	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20571891	20571891	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RALGAPA2	NM_020343	exon17	c.G2271A	p.Q757Q	CTGCTGCTGTCCC	.	74.0	19.0	74.0	1.0	.	24
RASSF6	166824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74451010	74451010	+	Silent	SNP	T	T	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RASSF6	NM_201431	exon6	c.A550C	p.R184R	TGGTTCTATAGAG	.	249.0	77.0	259.0	0.0	.	319
RBM34	23029	ucsc.edu;bcgsc.ca	37	1	235324541	235324541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RBM34	NM_001161533	exon1	c.A1G	p.M1V	AGGCCATTCTTAC	.	46.0	4.0	42.0	0.0	.	46
RBM46	166863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155719022	155719022	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RBM46	NM_144979	exon3	c.G211C	p.D71H	CCTCGTGATATGT	.	135.0	36.0	161.0	0.0	.	69
RBMS3	27303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	29781252	29781252	+	Silent	SNP	C	C	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RBMS3	NM_001003793	exon5	c.C441G	p.L147L	AAATCTCCCCATT	.	98.0	19.0	124.0	0.0	.	90
RELL2	285613	broad.mit.edu;mdanderson.org	37	5	141019591	141019591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RELL2	NM_173828	exon5	c.G608T	p.G203V	CAGGGGGTGGTCA	.	44.0	13.0	31.0	0.0	.	90
RILPL1	353116	ucsc.edu;bcgsc.ca	37	12	123970231	123970231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	NM_178314	exon5	c.A923G	p.E308G	TTGAGCTCGTTCC	.	36.0	4.0	43.0	0.0	.	.
RNF133	168433	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	122338762	122338763	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RNF133	NM_139175	exon1	c.210_211del	p.70_71del	CTGCCACTCTCTT	.	85.0	28.0	90.0	0.0	.	227
ROBO3	64221	ucsc.edu;bcgsc.ca	37	11	124749788	124749788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ROBO3	NM_022370	exon26	c.A3902G	p.E1301G	GTGGGGAGAGGAA	.	33.0	4.0	42.0	1.0	.	113
RPP30	10556	ucsc.edu;bcgsc.ca	37	10	92660343	92660343	+	Silent	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RPP30	NM_006413	exon11	c.T714C	p.A238A	AACTGCTTTTGGA	.	42.0	4.0	77.0	0.0	.	226
RUNX3	864	ucsc.edu;bcgsc.ca	37	1	25228849	25228849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RUNX3	NM_001031680	exon6	c.T1054C	p.S352P	AGCCAGAGGATGT	.	46.0	4.0	41.0	0.0	.	414
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237923107	237923107	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	RYR2	NM_001035	exon83	c.A11357C	p.D3786A	AAAAGGATGTGGG	.	166.0	43.0	144.0	0.0	.	158
SACM1L	22908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45748365	45748365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SACM1L	NM_014016	exon4	c.A299G	p.Y100C	TTTCTTATAAGAA	.	188.0	52.0	240.0	0.0	.	91
SAFB	6294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5653399	5653399	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SAFB	NM_002967	exon11	c.C1494T	p.D498D	CAGTGACGGGAAA	.	189.0	53.0	142.0	0.0	.	228
SCN5A	6331	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38645329	38645329	+	Silent	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SCN5A	NM_001160160	exon12	c.T1764C	p.H588H	TTTGCCATGGAGG	.	92.0	31.0	83.0	1.0	.	98
SELO	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50655246	50655246	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	.	.	.	.	GCTGAGTGCGGCA	.	43.0	17.0	26.0	2.0	.	.
SF3A1	10291	ucsc.edu;bcgsc.ca	37	22	30742471	30742471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SF3A1	NM_001005409	exon3	c.G223A	p.E75K	TGATCTCGTTCTG	.	251.0	64.0	209.0	2.0	.	157
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	7423775	7423775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SFMBT2	NM_001029880	exon2	c.G86A	p.G29E	AGGTCTCCATTTC	.	92.0	24.0	86.0	0.0	.	141
SLC10A2	6555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103701772	103701772	+	Silent	SNP	C	C	T	rs201412654		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLC10A2	NM_000452	exon5	c.G786A	p.T262T	CATCCCCGTTTCA	.	106.0	28.0	90.0	0.0	.	94
SLC17A1	6568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	25811931	25811931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLC17A1	NM_005074	exon9	c.C965T	p.S322L	AAGTCTGATAACT	.	76.0	17.0	79.0	0.0	.	94
SLC22A16	85413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110763664	110763664	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLC22A16	NM_033125	exon4	c.G966A	p.L322L	TTCTGACAGTTTA	.	76.0	17.0	66.0	0.0	.	91
SLC22A17	51310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23816360	23816360	+	Silent	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLC22A17	NM_020372	exon8	c.C1278T	p.A426A	GATGGCGGCAGCT	.	71.0	24.0	70.0	0.0	.	226
SLC36A1	206358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150843185	150843185	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLC36A1	NM_078483	exon3	c.T215A	p.V72E	TGGCGGTGAAAAA	.	109.0	24.0	113.0	0.0	.	91
SLC39A8	64116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	103228652	103228652	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLC39A8	NM_022154	exon3	c.T493G	p.F165V	CCACAAAAAAGGT	.	294.0	80.0	364.0	0.0	.	90
SLC8A1	6546	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	40656603	40656603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLC8A1	NM_001252624	exon1	c.G818T	p.G273V	ATCATCCCCCTCT	.	107.0	32.0	111.0	2.0	.	93
SLC9A7	84679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	46541903	46541903	+	Silent	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLC9A7	NM_001257291	exon2	c.C393T	p.S131S	AGTGCAGCTGAGT	.	49.0	26.0	51.0	0.0	.	132
SLIT3	6586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	168244433	168244433	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SLIT3	NM_001271946	exon8	c.A665T	p.H222L	GCCAGGTGGCAGT	.	70.0	22.0	39.0	0.0	.	95
SPAM1	6677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123594252	123594252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SPAM1	NM_153189	exon3	c.C628T	p.L210F	AAATTACTTCGGC	.	115.0	31.0	142.0	0.0	.	94
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	17719659	17719659	+	Silent	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SREBF1	NM_001005291	exon12	c.C2166T	p.A722A	GTTGGTGGCAGTG	.	20.0	11.0	15.0	0.0	.	91
SUV39H2	79723	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	14938885	14938885	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	SUV39H2	NM_001193426	exon3	c.A218C	p.D73A	GGCCAGATTCTAC	.	61.0	12.0	68.0	0.0	.	290
TAS2R40	259286	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142919945	142919945	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TAS2R40	NM_176882	exon1	c.C774T	p.F258F	CATTTTCAATGCA	.	162.0	29.0	157.0	2.0	.	23
TAT	6898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	71606499	71606499	+	Silent	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TAT	NM_000353	exon5	c.T501C	p.P167P	GAAACCAGGTCTT	.	109.0	24.0	122.0	0.0	.	92
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133941375	133941375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TG	NM_003235	exon23	c.C4754T	p.A1585V	CCAATGCTCCTGT	.	177.0	52.0	144.0	0.0	.	145
TLL1	7092	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166999180	166999180	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TLL1	NM_012464	exon18	c.T2440A	p.L814I	ATCAAATTAGTAA	.	91.0	25.0	64.0	1.0	.	158
TMEM184B	25829	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38643832	38643832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TMEM184B	NM_001195071	exon2	c.G136T	p.A46S	CCTGAGCGGCAGT	.	43.0	10.0	32.0	1.0	.	68
TMPRSS11F	389208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68934361	68934361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TMPRSS11F	NM_207407	exon7	c.C730A	p.L244I	CTGTGAGCAGCCA	.	148.0	44.0	93.0	0.0	.	91
TNFSF14	8740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6670048	6670048	+	Silent	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TNFSF14	NM_003807	exon2	c.T33C	p.F11F	CACCACAAACACT	.	86.0	25.0	93.0	0.0	.	228
TRAPPC8	22878	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29470774	29470774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TRAPPC8	NM_014939	exon12	c.A1652G	p.N551S	TTCATGTTTATAA	.	109.0	28.0	151.0	0.0	.	159
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72975034	72975034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TRPA1	NM_007332	exon6	c.G807T	p.E269D	AGTTACCTCCACT	.	243.0	61.0	260.0	0.0	.	230
TRPT1	83707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63992051	63992051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TRPT1	NM_001160389	exon5	c.G472T	p.A158S	CTGGGGCCAGGTG	.	69.0	12.0	39.0	0.0	.	90
TSEN2	80746	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12544973	12544973	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TSEN2	NM_001145395	exon5	c.A521T	p.N174I	TGGTAAACGGGGA	.	139.0	43.0	129.0	1.0	.	90
TUBD1	51174	broad.mit.edu;bcgsc.ca	37	17	57937714	57937714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	TUBD1	NM_016261	exon9	c.A1331G	p.E444G	ACCTGCTCTAATG	.	198.0	9.0	174.0	2.0	.	227
UBE2J2	118424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1190842	1190842	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	UBE2J2	NM_194315	exon8	c.A569T	p.Q190L	TCGTCTTGTGCTT	.	258.0	68.0	243.0	0.0	.	90
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	215916665	215916665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	USH2A	NM_206933	exon59	c.C11402T	p.P3801L	ATTTCGGGGATGA	.	37.0	8.0	25.0	0.0	.	115
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216062251	216062251	+	Silent	SNP	T	T	A	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	USH2A	NM_206933	exon41	c.A7740T	p.G2580G	GACATTTCCAGGA	.	108.0	29.0	91.0	0.0	.	115
VIPR1	7433	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	42577594	42577594	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	VIPR1	NM_004624	exon13	c.C1195T	p.L399L	GCGGAGCTGAGGC	.	56.0	12.0	55.0	0.0	.	91
VTCN1	79679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117699311	117699311	+	Silent	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	VTCN1	NM_024626	exon3	c.T330C	p.V110V	ATTGCCAACTATC	.	132.0	38.0	115.0	0.0	.	90
VWA3A	146177	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	22149760	22149760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	VWA3A	NM_173615	exon22	c.A2219G	p.K740R	AACCAAAGACACT	.	32.0	15.0	17.0	1.0	.	1
WAPAL	23063	broad.mit.edu;bcgsc.ca	37	10	88259809	88259809	+	Silent	SNP	A	A	G	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	WAPAL	NM_015045	exon3	c.T1191C	p.R397R	TCTGAGACGACCA	.	79.0	6.0	96.0	1.0	.	91
YBEY	54059	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	21	47711386	47711386	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	YBEY	NM_001006114	exon3	c.G349C	p.D117H	AGCGGGGATGCTG	.	147.0	50.0	164.0	0.0	.	92
ZC3H11A	9877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203816541	203816541	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ZC3H11A	NM_014827	exon15	c.A1272C	p.K424N	ACAAAAAAGCAAA	.	172.0	37.0	167.0	0.0	.	515
ZMIZ2	83637	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44795852	44795852	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ZMIZ2	NM_174929	exon1	c.A4T	p.N2Y	CCAATGAACTCCA	.	99.0	17.0	77.0	0.0	.	137
ZNF28	7576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53304147	53304147	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ZNF28	NM_006969	exon4	c.T951A	p.H317Q	TATCTTATGTGTT	.	116.0	27.0	112.0	0.0	.	91
ZNF408	79797	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	46726585	46726585	+	Silent	SNP	C	C	T	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ZNF408	NM_024741	exon5	c.C1335T	p.A445A	CAAGGCCTTTGCC	.	25.0	7.0	22.0	1.0	.	90
ZNF518A	9849	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	97917556	97917556	+	RNA	SNP	G	G	A	rs41291602	alternate_allele	TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	ZNF518A	.	.	.	.	ACTAATGGATTTT	.	78.0	27.0	95.0	0.0	G|0.999;C|0.001	23
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	64967201	64967202	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	.	.	.	p.S1410G	CCCAGCTGGAAAC	.	84.0	21.0	87.0	0.0	.	.
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1078363	1078364	+	Missense_Mutation	DNP	CC	CC	AT	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	.	.	.	p.S217Y	CCGCATCCTGCTC	.	83.0	29.0	52.0	0.0	.	.
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	137928399	137928400	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	GG	GG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	.	.	.	p.ED538DY	TTGTGAGGATCCA	.	137.0	42.0	100.0	1.0	.	.
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137759953	137759954	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-BC-4073-01B-02D-A12Z-10	TCGA-BC-4073-10A-01D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcc3deff-4d29-489d-834f-f2c98fd750d8	4af05379-ed6d-488f-932c-43921f43e40b	.	.	.	.	.	p.G1388L	TGTGATGGGAGGC	.	260.0	74.0	243.0	0.0	.	.