Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AANAT	15	broad.mit.edu;bcgsc.ca	37	17	74465897	74465897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AANAT	NM_001166579	exon7	c.G604A	p.A202T	CGGGCCGCGCTCA	.	91.0	7.0	65.0	0.0	.	90
ABCB10	23456	hgsc.bcm.edu;bcgsc.ca	37	1	229666086	229666086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ABCB10	NM_012089	exon8	c.C1505T	p.P502L	CGAGCTGGATAGG	.	90.0	5.0	119.0	0.0	.	153
ABCC4	10257	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95887013	95887013	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ABCC4	NM_005845	exon4	c.T382G	p.S128A	CCACAGAATCCAT	.	105.0	26.0	118.0	0.0	.	515
ACE	1636	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61556398	61556398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ACE	NM_000789	exon3	c.A448G	p.I150V	AGCAGGATCTACT	.	91.0	44.0	98.0	0.0	.	94
ADAMTS19	171019	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	129070694	129070694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ADAMTS19	NM_133638	exon22	c.C3364A	p.H1122N	GGAAGACATGGAA	.	496.0	228.0	425.0	2.0	.	295
ADORA3	140	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	112042758	112042758	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ADORA3	NM_000677	exon2	c.T771A	p.G257G	TACCTCACCATTA	.	341.0	20.0	202.0	1.0	.	156
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	88035706	88035706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AFF1	NM_001166693	exon12	c.C1721A	p.S574Y	AAAGCTCCAGCAA	.	62.0	17.0	76.0	0.0	.	289
AFMID	125061	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	76198608	76198608	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AFMID	NM_001145526	exon3	c.G183A	p.K61K	CAGGAAGAGCCTG	.	53.0	31.0	55.0	0.0	.	136
AK2	204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33478978	33478978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AK2	NM_013411	exon6	c.G524A	p.R175Q	TCTGATCGACGGA	.	109.0	44.0	161.0	0.0	.	252
ALOX12	239	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6905064	6905064	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ALOX12	NM_000697	exon8	c.C1095T	p.H365H	CACTCACCTGGTG	.	73.0	19.0	95.0	0.0	.	226
ALPK2	115701	broad.mit.edu;bcgsc.ca	37	18	56246726	56246726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ALPK2	NM_052947	exon4	c.G1282C	p.G428R	TCATCCCTGTTTG	.	130.0	9.0	149.0	0.0	.	765
ARHGAP25	9938	hgsc.bcm.edu;bcgsc.ca	37	2	69053300	69053300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ARHGAP25	NM_001007231	exon11	c.A1915G	p.M639V	AAATCCATGAAGG	.	67.0	4.0	102.0	0.0	.	274
ARHGEF40	55701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21552186	21552186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ARHGEF40	NM_018071	exon17	c.G3766A	p.V1256M	CTGGCCGTGGAGG	.	97.0	35.0	160.0	0.0	.	228
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27056354	27056354	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ARID1A	NM_006015	exon2	c.G1350A	p.Q450Q	ACAGCAGGTAGAT	.	223.0	129.0	315.0	1.0	.	584
ASAP2	8853	hgsc.bcm.edu;bcgsc.ca	37	2	9541497	9541497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ASAP2	NM_003887	exon27	c.T2918C	p.V973A	TCATCGTGGACGG	.	148.0	7.0	138.0	0.0	.	90
ASIP	434	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	32856830	32856830	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ASIP	NM_001672	exon3	c.C256A	p.R86R	CGGCCCCGGACCC	.	51.0	26.0	42.0	0.0	.	90
ATM	472	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	108127032	108127032	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ATM	NM_000051	exon14	c.G2215T	p.E739X	GAAGAGGAAGCAT	.	120.0	43.0	136.0	1.0	.	3419
ATP10B	23120	hgsc.bcm.edu;bcgsc.ca	37	5	160063301	160063301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ATP10B	NM_025153	exon11	c.A1016G	p.N339S	GTCCCATTCCAGA	.	85.0	4.0	65.0	0.0	.	72
BHLHE40	8553	hgsc.bcm.edu;bcgsc.ca	37	3	5025019	5025019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	BHLHE40	NM_003670	exon5	c.T881C	p.L294P	TGCAGCTTTCGGA	.	83.0	5.0	95.0	0.0	.	91
BTBD19	149478	hgsc.bcm.edu;bcgsc.ca	37	1	45275896	45275896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_001136537	exon2	c.T98C	p.F33S	TTTGCTTCGTGGT	.	80.0	4.0	65.0	0.0	.	.
C4orf22	255119	hgsc.bcm.edu;bcgsc.ca	37	4	81791253	81791254	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	C4orf22,upper_back,malignant_melanoma,0	C4orf22	NM_001206997	exon5	c.491_492insA	p.G164fs	TTACTGGAAAAAA	.	257.0	74.0	279.0	0.0	.	93
CCDC135	84229	ucsc.edu;bcgsc.ca	37	16	57758704	57758704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CCDC135	NM_032269	exon12	c.A1715G	p.K572R	TCAAGAAGCTCAC	.	40.0	4.0	54.0	0.0	.	90
CCNB1	891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68467214	68467214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CCNB1	NM_031966	exon4	c.G481A	p.G161R	GAAGATGGAGCTG	.	286.0	88.0	237.0	0.0	.	650
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104053878	104053878	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CENPE	NM_001813	exon42	c.T6896A	p.V2299E	TTATTCACTTGAC	.	236.0	92.0	348.0	0.0	.	277
CHD5	26038	hgsc.bcm.edu;bcgsc.ca	37	1	6188597	6188597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CHD5	NM_015557	exon24	c.C3692T	p.A1231V	CTGGCGGCCAAGT	.	79.0	4.0	153.0	0.0	.	719
CHRNA2	1135	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27320514	27320514	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CHRNA2	NM_000742	exon6	c.T1446C	p.S482S	ATCCTCAGACCGC	.	117.0	26.0	120.0	0.0	.	91
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	122227423	122227423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CLASP1	NM_001207051	exon9	c.C826T	p.R276C	GCCGGCGGGTGGT	.	108.0	6.0	96.0	0.0	.	91
CNKSR1	10256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26514760	26514760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CNKSR1	NM_006314	exon17	c.A1490G	p.Y497C	CCAAGTACCAGTC	.	78.0	42.0	118.0	0.0	.	846
CNOT10	25904	hgsc.bcm.edu;bcgsc.ca	37	3	32811404	32811404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CNOT10	NM_001256742	exon18	c.A2210G	p.E737G	CTAAAGAGGTGCC	.	82.0	4.0	93.0	0.0	.	91
COBLL1	22837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	165552127	165552127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	COBLL1	NM_014900	exon12	c.A1889G	p.N630S	GGTTGATTCAGTT	.	654.0	232.0	667.0	0.0	.	93
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	103364262	103364262	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	COL11A1	NM_080629	exon56	c.A4244T	p.K1415M	CCAGGCTTTCCTG	.	421.0	63.0	202.0	0.0	.	586
COL16A1	1307	hgsc.bcm.edu;bcgsc.ca	37	1	32149600	32149600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	COL16A1	NM_001856	exon33	c.A2288G	p.Q763R	CCGGGTTGGCCCT	.	105.0	5.0	164.0	0.0	.	98
COL6A6	131873	hgsc.bcm.edu;bcgsc.ca	37	3	130285737	130285737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	COL6A6	NM_001102608	exon4	c.A1474G	p.K492E	ATCAATAAATACT	.	123.0	5.0	148.0	0.0	.	76
CPS1	1373	hgsc.bcm.edu;bcgsc.ca	37	2	211523405	211523405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CPS1	NM_001122633	exon32	c.A3767G	p.D1256G	GAAATGATGTCTT	.	91.0	4.0	121.0	0.0	.	162
CPT1C	126129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50209501	50209501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CPT1C	NM_001199752	exon12	c.C1174A	p.Q392K	TGGGCCCAGGTGC	.	67.0	15.0	49.0	0.0	.	92
CTSK	1513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150778691	150778691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CTSK	NM_000396	exon3	c.A130G	p.I44V	GAGAGATTTCATC	.	341.0	258.0	133.0	1.0	.	91
CYP27C1	339761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	127958787	127958787	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CYP27C1	NM_001001665	exon3	c.A299C	p.Y100S	CCTGCATACATGG	.	88.0	31.0	94.0	0.0	.	90
DBR1	51163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	137880850	137880850	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DBR1	NM_016216	exon8	c.A1516T	p.T506S	CCTTGGTTAAGTC	.	540.0	194.0	602.0	0.0	.	90
DND1	373863	hgsc.bcm.edu;bcgsc.ca	37	5	140052972	140052972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DND1	NM_194249	exon2	c.T26C	p.L9P	CACCACAGCTGAG	.	121.0	5.0	97.0	0.0	.	90
DOM3Z	1797	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31938796	31938796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DOM3Z	NM_005510	exon3	c.T485C	p.L162P	TCACTCAGGTATA	.	77.0	32.0	86.0	1.0	.	90
DPPA2	151871	hgsc.bcm.edu;bcgsc.ca	37	3	109028179	109028179	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DPPA2	NM_138815	exon5	c.182-2A>G	.	ATGACCTAAGACA	.	124.0	5.0	210.0	0.0	.	93
E2F6	1876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11587894	11587894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	E2F6	NM_198256	exon6	c.A658G	p.I220V	CTGTGATAGAGTC	.	141.0	55.0	265.0	0.0	.	838
ECEL1	9427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233344956	233344956	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ECEL1	NM_004826	exon18	c.G2235T	p.L745L	ACTGCCCAGCACC	.	102.0	49.0	143.0	0.0	.	90
ENO1	2023	hgsc.bcm.edu;bcgsc.ca	37	1	8930511	8930511	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ENO1	NM_001428	exon4	c.G240A	p.K80K	TCCTACCTTGCTA	.	54.0	4.0	85.0	0.0	.	652
EPHA10	284656	hgsc.bcm.edu;bcgsc.ca	37	1	38186511	38186511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EPHA10	NM_001099439	exon12	c.A2152G	p.T718A	TCAAGGTGCTTCC	.	84.0	5.0	94.0	0.0	.	1246
EXTL3	2137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28574774	28574774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EXTL3	NM_001440	exon3	c.T1198C	p.C400R	TTCACCTGCAAAA	.	103.0	43.0	88.0	0.0	.	92
FAM180A	389558	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135421867	135421867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAM180A	NM_205855	exon2	c.G157A	p.E53K	CCACCTCCTCCAG	.	75.0	38.0	124.0	0.0	.	92
FAM184B	27146	hgsc.bcm.edu;bcgsc.ca	37	4	17641002	17641002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAM184B	NM_015688	exon14	c.A2537G	p.Q846R	GCTTGCTGAGTCT	.	85.0	4.0	105.0	0.0	.	23
FAM47A	158724	broad.mit.edu;bcgsc.ca	37	X	34148612	34148612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAM47A	NM_203408	exon1	c.T1784C	p.V595A	TCAGAAACGCACT	.	147.0	9.0	113.0	1.0	.	134
FAM71D	161142	ucsc.edu;mdanderson.org	37	14	67671395	67671395	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAM71D	NM_173526	exon5	c.G501A	p.W167X	TCAATGGGTGGCC	.	228.0	86.0	270.0	0.0	.	23
FAM89A	375061	ucsc.edu;bcgsc.ca	37	1	231155652	231155652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAM89A	NM_198552	exon2	c.T512C	p.V171A	GAGGAGACAGGCA	.	43.0	4.0	77.0	0.0	.	90
FAT1	2195	hgsc.bcm.edu;bcgsc.ca	37	4	187541014	187541014	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAT1	NM_005245	exon10	c.G6726A	p.L2242L	AAAGTCCAGAGGA	.	76.0	4.0	168.0	0.0	.	34
FBXW4	6468	ucsc.edu;bcgsc.ca	37	10	103436144	103436144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FBXW4	NM_022039	exon2	c.A310G	p.R104G	CCAGTCTCCAGTT	.	45.0	4.0	62.0	0.0	.	226
FGD5	152273	hgsc.bcm.edu;bcgsc.ca	37	3	14862587	14862587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FGD5	NM_152536	exon1	c.A2009G	p.H670R	AATTGCATGTGGA	.	123.0	5.0	148.0	0.0	.	231
FGF6	2251	ucsc.edu;bcgsc.ca	37	12	4554699	4554699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FGF6	NM_020996	exon1	c.G38A	p.R13Q	GCTCCCCGGGACA	.	29.0	4.0	24.0	0.0	.	659
FIGN	55137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	164466794	164466794	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FIGN	NM_018086	exon3	c.G1548T	p.T516T	TAAGGCCGTCAGT	.	148.0	55.0	175.0	0.0	.	156
FNDC3B	64778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	171965470	171965470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FNDC3B	NM_001135095	exon5	c.C412T	p.H138Y	AACTCACACACGG	.	263.0	101.0	289.0	0.0	.	155
FTMT	94033	hgsc.bcm.edu;bcgsc.ca	37	5	121187671	121187671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FTMT	NM_177478	exon1	c.T13C	p.F5L	TCCTGCTTCAGGC	.	76.0	4.0	60.0	0.0	.	91
GAB1	2549	hgsc.bcm.edu;bcgsc.ca	37	4	144378870	144378870	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GAB1	NM_207123	exon7	c.T1623C	p.G541G	CCATGGTTTAGAG	.	94.0	5.0	107.0	0.0	.	1146
GABRG2	2566	hgsc.bcm.edu;bcgsc.ca	37	5	161576259	161576259	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GABRG2	NM_198903	exon9	c.1188delG	p.L396fs	CACCTTGCATTAT	.	924.0	222.0	822.0	0.0	.	95
GABRG2	2566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161580269	161580269	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GABRG2	NM_198903	exon11	c.G1443A	p.R481R	TGGGAGGATACAT	.	718.0	200.0	589.0	0.0	.	95
GALNTL6	442117	hgsc.bcm.edu;bcgsc.ca	37	4	173730521	173730521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GALNTL6	NM_001034845	exon6	c.A563G	p.K188R	ACCTGAAGGATAA	.	97.0	4.0	171.0	0.0	.	137
GHSR	2693	hgsc.bcm.edu;bcgsc.ca	37	3	172163000	172163000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GHSR	NM_198407	exon2	c.T1052C	p.L351P	TCTTTCAGAGTGG	.	78.0	4.0	84.0	0.0	.	501
GPR148	344561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	131487061	131487061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GPR148	NM_207364	exon1	c.G337A	p.G113S	CTGGGTGGCTGGG	.	140.0	7.0	166.0	0.0	.	91
GPT	2875	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145730179	145730179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GPT	NM_005309	exon3	c.A278T	p.D93V	ACCCTGATCTTCT	.	229.0	22.0	175.0	0.0	.	91
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	94006348	94006348	+	Silent	SNP	T	T	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GRID2	NM_001510	exon3	c.T447G	p.P149P	CCCACCTGTCTAC	.	136.0	53.0	193.0	0.0	.	159
GRM1	2911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146720308	146720308	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GRM1	NM_000838	exon8	c.A2133T	p.S711S	TGCCTCAATTCTG	.	194.0	72.0	207.0	0.0	.	1080
GSDMD	79792	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144644902	144644902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GSDMD	NM_001166237	exon14	c.T1283C	p.L428P	GGCTCCTGGGGAA	.	114.0	81.0	95.0	1.0	.	90
GSDMD	79792	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144644913	144644913	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GSDMD	NM_001166237	exon14	c.T1294A	p.W432R	AACAGCTGGGGCG	.	131.0	92.0	113.0	0.0	.	90
HAUS6	54801	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19070270	19070270	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HAUS6	NM_017645	exon12	c.T1323C	p.N441N	GCAACCATTTTCT	.	482.0	175.0	607.0	2.0	.	92
HDLBP	3069	broad.mit.edu;ucsc.edu	37	2	242174540	242174540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HDLBP	NM_005336	exon23	c.A3140G	p.D1047G	ACCCGGTCCTCCT	.	45.0	6.0	51.0	0.0	.	290
HEG1	57493	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124720775	124720775	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HEG1	NM_020733	exon11	c.G3438C	p.R1146S	CTGCATCCTATCA	.	241.0	77.0	247.0	1.0	.	70
HK2	3099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75113635	75113635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HK2	NM_000189	exon15	c.G2054T	p.C685F	ATGCCTGCTACAT	.	129.0	50.0	143.0	0.0	.	252
HNRNPCL1	343069	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	12908011	12908011	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HNRNPCL1	NM_001013631	exon2	c.G132A	p.A44A	GCAGCCCGCAATT	.	301.0	60.0	495.0	0.0	.	68
IAH1	285148	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9628439	9628439	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IAH1	NM_001039613	exon6	c.T728G	p.L243R	GTCTGCTGGGAGA	.	146.0	57.0	162.0	1.0	.	22
IQCC	55721	hgsc.bcm.edu;bcgsc.ca	37	1	32673299	32673299	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IQCC	NM_001160042	exon5	c.G1257A	p.R419R	GTCCAGGACACAG	.	72.0	4.0	139.0	0.0	.	94
ITGA10	8515	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145530929	145530929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ITGA10	NM_003637	exon7	c.G661T	p.D221Y	CTGGGAGATTTCC	.	482.0	23.0	175.0	0.0	.	231
ITGAM	3684	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31284710	31284710	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ITGAM	NM_000632	exon8	c.C729T	p.N243N	CACCAACGGAGCC	.	102.0	18.0	106.0	0.0	.	226
JAK2	3717	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5126358	5126358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	JAK2	NM_004972	exon24	c.A3203G	p.D1068G	GCAATGACAAACA	.	138.0	45.0	139.0	0.0	.	75307
KCNB2	9312	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73849371	73849371	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KCNB2	NM_004770	exon3	c.T1781A	p.I594N	AGGTCATTGTGGA	.	134.0	94.0	66.0	0.0	.	158
KHDC3L	154288	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	74072866	74072866	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_001017361	exon2	c.T218A	p.L73X	AAATCTTGATTCA	.	96.0	38.0	108.0	0.0	.	.
KIAA0586	9786	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58937380	58937380	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KIAA0586	NM_001244189	exon19	c.T2651A	p.V884D	CTGATGTCCTTTC	.	166.0	25.0	190.0	0.0	.	23
KIAA1324L	222223	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86569424	86569424	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KIAA1324L	NM_001142749	exon6	c.T749C	p.L250P	GATTTCAGCATTA	.	217.0	69.0	246.0	1.0	.	97
KIF19	124602	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72342619	72342619	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KIF19	NM_153209	exon8	c.A880C	p.K294Q	AGCAACAAGTACA	.	157.0	84.0	152.0	0.0	.	90
KPNA6	23633	hgsc.bcm.edu;bcgsc.ca	37	1	32631794	32631794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KPNA6	NM_012316	exon11	c.T1079C	p.I360T	GGACTATTTCAAA	.	91.0	4.0	142.0	0.0	.	226
KRT4	3851	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53202117	53202117	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KRT4	NM_002272	exon6	c.C1086A	p.I362I	CCTCTGGATCATC	.	273.0	42.0	290.0	0.0	.	96
KRTAP4-11	653240	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39274012	39274012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_033059	exon1	c.C556T	p.R186C	AGGGGCGGGGGCA	.	288.0	158.0	190.0	0.0	.	.
LAMB2	3913	hgsc.bcm.edu;bcgsc.ca	37	3	49169091	49169091	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LAMB2	NM_002292	exon5	c.C525T	p.Y175Y	ATATCGGTACACA	.	92.0	5.0	68.0	0.0	.	93
LCE1F	353137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152748869	152748869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LCE1F	NM_178354	exon1	c.C22A	p.Q8K	AGCCAGCAGCAGT	.	841.0	640.0	260.0	0.0	.	68
LEAP2	116842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	132209684	132209685	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LEAP2	NM_052971	exon2	c.100_101insG	p.R34fs	AAGAGAAGGCCAC	.	135.0	63.0	137.0	0.0	.	90
LIX1L	128077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145497479	145497479	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LIX1L	NM_153713	exon4	c.G684A	p.L228L	AATGTTGGAGTTC	.	537.0	73.0	205.0	0.0	.	91
LOXL3	84695	hgsc.bcm.edu;bcgsc.ca	37	2	74763252	74763252	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LOXL3	NM_032603	exon7	c.A1119G	p.E373E	GCGAACTTCACTC	.	61.0	4.0	73.0	0.0	.	226
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170031784	170031784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LRP2	NM_004525	exon55	c.G10687A	p.G3563S	AGTTGCCGTCACT	.	200.0	88.0	213.0	0.0	.	175
LYST	1130	hgsc.bcm.edu;bcgsc.ca	37	1	235922305	235922305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LYST	NM_000081	exon23	c.A6848G	p.E2283G	TTTGGCTCATAAC	.	85.0	5.0	126.0	0.0	.	143
MAK16	84549	broad.mit.edu;bcgsc.ca	37	8	33355953	33355953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MAK16	NM_032509	exon10	c.A709G	p.M237V	TAGGATATGGATA	.	90.0	5.0	96.0	0.0	.	69
MAP7D2	256714	broad.mit.edu;bcgsc.ca	37	X	20074814	20074814	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MAP7D2	NM_001168466	exon4	c.A468G	p.G156G	TCCGGGTCCAATG	.	67.0	6.0	62.0	0.0	.	195
MLH1	4292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37053518	37053518	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MLH1	NM_000249	exon8	c.C605G	p.A202G	CAGTAGCTGATGT	.	178.0	56.0	209.0	0.0	.	2559
MLL3	58508	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	151962208	151962208	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MLL3	NM_170606	exon8	c.C1099G	p.H367D	TTCCATGATAGTG	.	566.0	41.0	527.0	0.0	.	1398
MN1	4330	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28193394	28193394	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MN1	NM_002430	exon1	c.G3138A	p.S1046S	CTCGTCCGAGGCG	.	71.0	21.0	72.0	0.0	.	993
MOCS3	27304	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49576556	49576556	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MOCS3	NM_014484	exon1	c.A1177T	p.I393F	GAAGCAATCTGGG	.	75.0	28.0	90.0	0.0	.	93
MRC2	9902	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60765748	60765748	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MRC2	NM_006039	exon21	c.A3045T	p.T1015T	CATCACAAACCCC	.	108.0	48.0	123.0	0.0	.	117
MTMR4	9110	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56585600	56585600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MTMR4	NM_004687	exon8	c.C587T	p.P196L	CACACAGGAACCA	.	57.0	11.0	57.0	0.0	.	91
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9062181	9062181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MUC16	NM_024690	exon3	c.G25265A	p.S8422N	GAGCTGCTGGTCT	.	123.0	70.0	255.0	0.0	.	566
MUSK	4593	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	113563239	113563239	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MUSK	NM_005592	exon14	c.G2581T	p.E861X	ATGTGTGAGAGGG	.	55.0	20.0	64.0	0.0	.	1379
MYH4	4622	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10369612	10369612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYH4	NM_017533	exon4	c.G326T	p.R109L	GCGTAACGCTCTT	.	420.0	136.0	424.0	0.0	.	102
MYLIP	29116	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	16145168	16145168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYLIP	NM_013262	exon6	c.C868A	p.R290S	TATAGCCGTGACT	.	182.0	58.0	200.0	0.0	.	91
MYO3B	140469	hgsc.bcm.edu;bcgsc.ca	37	2	171323061	171323061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYO3B	NM_001083615	exon25	c.C2854T	p.H952Y	CAGCCCCACTTTG	.	75.0	4.0	71.0	0.0	.	530
NCOA6	23054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33337355	33337355	+	Silent	SNP	C	C	T	rs147990465		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NCOA6	NM_014071	exon9	c.G2643A	p.T881T	CGTTAGCGTGACA	.	363.0	138.0	448.0	1.0	C|1.000;T|0.000	292
NEBL	10529	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	21074701	21074701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NEBL	NM_006393	exon28	c.C3020T	p.A1007V	TAATTCGCTGGGA	.	95.0	31.0	107.0	0.0	.	92
NEU2	4759	hgsc.bcm.edu;bcgsc.ca	37	2	233898881	233898881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NEU2	NM_005383	exon2	c.A257G	p.N86S	CCATGAACCCATG	.	107.0	5.0	119.0	0.0	.	90
NFKBIB	4793	ucsc.edu;bcgsc.ca	37	19	39397949	39397949	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NFKBIB	NM_002503	exon4	c.G708A	p.P236P	CAAACCGGTGAGC	.	37.0	4.0	45.0	0.0	.	658
NMUR1	10316	hgsc.bcm.edu;bcgsc.ca	37	2	232392897	232392897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NMUR1	NM_006056	exon2	c.T835C	p.S279P	ATCTGGACCTGGC	.	74.0	5.0	86.0	0.0	.	523
NOTCH2	4853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	120539927	120539927	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NOTCH2	NM_001200001	exon4	c.C444T	p.C148C	AGACAGGCAGGCA	.	614.0	406.0	317.0	1.0	.	1441
NPHP1	4867	hgsc.bcm.edu;bcgsc.ca	37	2	110881571	110881571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NPHP1	NM_000272	exon20	c.T1999C	p.S667P	GTGTGGAGTGGAG	.	66.0	4.0	105.0	0.0	.	92
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	149073680	149073680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NR3C2	NM_000901	exon6	c.G2450T	p.R817I	TACGATCTCCAGC	.	234.0	78.0	308.0	0.0	.	154
NRBP2	340371	broad.mit.edu;bcgsc.ca	37	8	144919472	144919473	+	Splice_Site	INS	-	-	TGGCA	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NRBP2	NM_178564	exon14	c.1077-1->TGCCA	.	GAGTACCTGGCAT	.	118.0	20.0	75.0	0.0	.	354
NYNRIN	57523	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24877718	24877718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NYNRIN	NM_025081	exon3	c.C842A	p.A281E	AGGCAGCAAACCA	.	39.0	10.0	31.0	0.0	.	3
OGFOD3	79701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80356196	80356196	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_024648	exon9	c.700-1G>T	.	GGTCACCTGAGGG	.	93.0	21.0	81.0	0.0	.	.
OPRM1	4988	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154412235	154412235	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	OPRM1	NM_001145279	exon5	c.C1071A	p.V357V	GAGTGTCCGCATG	.	523.0	181.0	597.0	2.0	.	69
PANX2	56666	ucsc.edu;bcgsc.ca	37	22	50615985	50615985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PANX2	NM_052839	exon2	c.C844A	p.P282T	AAGCTCCCGTCCG	.	36.0	4.0	39.0	0.0	.	131
PC	5091	ucsc.edu;bcgsc.ca	37	11	66618558	66618558	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PC	NM_000920	exon16	c.T2176C	p.L726L	CGGCCAAGCCCAT	.	38.0	4.0	75.0	0.0	.	228
PCDHGC3	5098	hgsc.bcm.edu;bcgsc.ca	37	5	140856091	140856091	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PCDHGC3	NM_032402	exon1	c.T408C	p.P136P	TTTCCCTACCCAG	.	119.0	5.0	120.0	0.0	.	24
PDX1	3651	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	28498632	28498632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PDX1	NM_000209	exon2	c.G646A	p.G216R	GCTGTCGGGGGTG	.	34.0	8.0	41.0	0.0	.	514
PDZD9	255762	broad.mit.edu;bcgsc.ca	37	16	21995822	21995823	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PDZD9	NM_173806	exon3	c.381_382insA	p.H127fs	ATATCCATGCCAG	.	401.0	132.0	501.0	0.0	.	91
PIK3R4	30849	hgsc.bcm.edu;bcgsc.ca	37	3	130435261	130435261	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PIK3R4	NM_014602	exon9	c.T2310C	p.L770L	CTTCAGAAGCTGT	.	113.0	6.0	134.0	0.0	.	1471
PLCG2	5336	ucsc.edu;bcgsc.ca	37	16	81969981	81969981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PLCG2	NM_002661	exon27	c.C3050T	p.A1017V	AGACGGCAGGTAA	.	34.0	4.0	43.0	0.0	.	892
PLOD2	5352	hgsc.bcm.edu;bcgsc.ca	37	3	145795696	145795696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PLOD2	NM_182943	exon14	c.A1516G	p.K506E	AGTCTTTTTCCCT	.	57.0	4.0	41.0	0.0	.	92
PLXNA1	5361	hgsc.bcm.edu;bcgsc.ca	37	3	126739124	126739124	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PLXNA1	NM_032242	exon20	c.G3975T	p.R1325R	CTACCGGACATAT	.	87.0	4.0	106.0	0.0	.	93
PNLIP	5406	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118310666	118310666	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PNLIP	NM_000936	exon5	c.C381T	p.S127S	TGGCTCCCGAACT	.	119.0	63.0	265.0	0.0	.	92
POLN	353497	hgsc.bcm.edu;bcgsc.ca	37	4	2210196	2210196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	POLN	NM_181808	exon3	c.A232G	p.S78G	TCTGACTTCTTAA	.	59.0	4.0	78.0	0.0	.	539
PPP1R3B	79660	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	8998473	8998473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PPP1R3B	NM_001201329	exon2	c.A689G	p.Y230C	ATCCTATAGTTCT	.	488.0	190.0	568.0	0.0	.	228
PPP2R3A	5523	hgsc.bcm.edu;bcgsc.ca	37	3	135721457	135721457	+	Missense_Mutation	SNP	T	T	C	rs148236440	alternate_allele	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PPP2R3A	NM_002718	exon2	c.T1117C	p.S373P	AACAACTCCACAA	.	119.0	5.0	135.0	0.0	T|1.000;G|0.000	662
PRMT10	90826	hgsc.bcm.edu;bcgsc.ca	37	4	148563937	148563937	+	Splice_Site	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PRMT10	NM_138364	exon11	c.2199+1G>A	.	CACTTACCTGAAA	.	78.0	4.0	128.0	0.0	.	91
PTPRN2	5799	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	157369373	157369373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PTPRN2	NM_002847	exon19	c.G2715T	p.Q905H	GTGGAACTGCGTC	.	142.0	44.0	148.0	0.0	.	295
PTPRU	10076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29641992	29641992	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PTPRU	NM_005704	exon24	c.C3366T	p.S1122S	CTGCTCCCGGCGT	.	82.0	48.0	161.0	0.0	.	291
PUS10	150962	hgsc.bcm.edu;bcgsc.ca	37	2	61175283	61175283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PUS10	NM_144709	exon16	c.T1346C	p.L449P	CGGTGAAGGACGC	.	123.0	5.0	152.0	0.0	.	291
QRICH2	84074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74287960	74287960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	QRICH2	NM_032134	exon4	c.G2350A	p.D784N	ATAAATCATGCAA	.	200.0	53.0	166.0	0.0	.	94
RAB6B	51560	hgsc.bcm.edu;bcgsc.ca	37	3	133560224	133560224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RAB6B	NM_016577	exon4	c.A194G	p.Q65R	CAGAGCTGCAGTC	.	84.0	4.0	83.0	0.0	.	228
RASSF1	11186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50368106	50368106	+	Missense_Mutation	SNP	C	C	G	rs142957899	alternate_allele	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RASSF1	NM_170714	exon6	c.G941C	p.R314P	TCCTCCCGCTGCA	.	60.0	12.0	79.0	0.0	C|1.000;T|0.000	417
RB1	5925	broad.mit.edu;bcgsc.ca	37	13	48939032	48939033	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RB1	NM_000321	exon9	c.864_865insA	p.V288fs	TCAGGTGAAAAAT	.	230.0	114.0	465.0	0.0	.	3784
RBL2	5934	ucsc.edu;bcgsc.ca	37	16	53504485	53504485	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RBL2	NM_005611	exon16	c.A2436G	p.P812P	TTCCCCAGGTGGC	.	41.0	4.0	107.0	0.0	.	841
RESP18	389075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220194423	220194423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RESP18	NM_001007089	exon4	c.G401T	p.R134I	TGCAGTCTGCTGG	.	145.0	44.0	150.0	0.0	.	90
RGL2	5863	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33261661	33261661	+	Silent	SNP	G	G	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RGL2	NM_004761	exon13	c.C1419G	p.L473L	ATTCTGGAGCCGT	.	95.0	37.0	105.0	0.0	.	662
RIN3	79890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93118696	93118696	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RIN3	NM_024832	exon6	c.G1302A	p.Q434Q	AGGCCAGGACACA	.	116.0	36.0	164.0	0.0	.	522
RLN2	6019	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5300172	5300172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RLN2	NM_134441	exon2	c.C484A	p.Q162K	AGAGTTGTCTCTT	.	315.0	108.0	385.0	1.0	.	90
RPRD1B	58490	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36687860	36687860	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RPRD1B	NM_021215	exon5	c.G593C	p.R198P	CTGTCCGACAGAA	.	156.0	54.0	164.0	0.0	.	91
RTKN2	219790	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	63999451	63999451	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RTKN2	NM_145307	exon5	c.G444T	p.V148V	TTTATCCACATTC	.	415.0	21.0	346.0	0.0	.	68
SCAND3	114821	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28543241	28543241	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SCAND3	NM_052923	exon3	c.C1241G	p.P414R	TCCGTAGGCCTTT	.	83.0	36.0	186.0	0.0	.	91
SCN10A	6336	hgsc.bcm.edu;bcgsc.ca	37	3	38812863	38812863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SCN10A	NM_006514	exon4	c.T506C	p.L169S	TTTATCAAGGCTT	.	90.0	5.0	103.0	0.0	.	99
SCN3A	6328	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166003251	166003251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SCN3A	NM_001081676	exon12	c.C1669A	p.Q557K	ATACCTGATGAGG	.	354.0	148.0	418.0	2.0	.	141
SLC22A23	63027	hgsc.bcm.edu;bcgsc.ca	37	6	3290023	3290023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SLC22A23	NM_015482	exon6	c.A1288G	p.N430D	CAATGTTCTTCCA	.	84.0	4.0	88.0	0.0	.	23
SLC9C2	284525	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	173526509	173526509	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_178527	exon10	c.C1185T	p.L395L	TTCAGCGAGATTA	.	1002.0	105.0	366.0	1.0	.	.
SNX15	29907	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64806100	64806100	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SNX15	NM_013306	exon7	c.T721A	p.S241T	GTGGAGTCTGCAA	.	132.0	44.0	138.0	1.0	.	227
SOCS6	9306	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	67992658	67992658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SOCS6	NM_004232	exon2	c.G754A	p.A252T	GTCTCTGCGGTTC	.	201.0	71.0	209.0	0.0	.	721
SPATS1	221409	broad.mit.edu;bcgsc.ca	37	6	44328192	44328192	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SPATS1	NM_145026	exon4	c.T297C	p.A99A	CACTGCTGACTTG	.	89.0	6.0	107.0	0.0	.	91
SPEN	23013	broad.mit.edu;ucsc.edu	37	1	16260812	16260812	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SPEN	NM_015001	exon11	c.C8077T	p.L2693L	AACGTCCTGAAAG	.	21.0	3.0	54.0	0.0	.	298
SPTLC2	9517	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	78021725	78021725	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SPTLC2	NM_004863	exon8	c.T1094A	p.L365Q	GGATCCAGGCCAA	.	138.0	46.0	93.0	0.0	.	92
SRSF3	6428	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36564637	36564637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SRSF3	NM_003017	exon2	c.A98G	p.Y33C	GCTACTATGGACC	.	160.0	53.0	187.0	0.0	.	227
ST6GAL2	84620	hgsc.bcm.edu;bcgsc.ca	37	2	107459744	107459744	+	Silent	SNP	G	G	A	rs144265287	alternate_allele	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ST6GAL2	NM_032528	exon2	c.C690T	p.T230T	GTTGGCGGTCAGG	.	51.0	4.0	31.0	0.0	G|1.000;C|0.000	191
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64596547	64596547	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SYNE2	NM_182914	exon75	c.G14067A	p.V4689V	CCGAGTGGCCAAA	.	117.0	45.0	124.0	0.0	.	164
TACC2	10579	ucsc.edu;bcgsc.ca	37	10	123842397	123842397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TACC2	NM_206862	exon4	c.G382A	p.A128T	GCAGCGGCACCTG	.	39.0	4.0	76.0	0.0	.	296
TBC1D9B	23061	hgsc.bcm.edu;bcgsc.ca	37	5	179320450	179320450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TBC1D9B	NM_198868	exon5	c.T595C	p.W199R	CCACCCACTGCAC	.	72.0	4.0	64.0	0.0	.	154
TCF19	6941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31129627	31129627	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TCF19	NM_001077511	exon3	c.G642T	p.T214T	GACCACGCCTTCT	.	41.0	7.0	40.0	0.0	.	90
TCF21	6943	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	134212868	134212868	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TCF21	NM_003206	exon2	c.G468A	p.V156V	TATGGTGGCCGGG	.	55.0	24.0	53.0	0.0	.	90
TGFB2	7042	hgsc.bcm.edu;bcgsc.ca	37	1	218578636	218578636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TGFB2	NM_001135599	exon3	c.A556G	p.K186E	AACCCAAAAGCCA	.	61.0	4.0	135.0	0.0	.	710
TMEM131	23505	hgsc.bcm.edu;bcgsc.ca	37	2	98410005	98410005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TMEM131	NM_015348	exon30	c.T3398C	p.L1133P	ACCAAAAGAAACA	.	104.0	7.0	107.0	0.0	.	74
TMEM64	169200	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	91643868	91643868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TMEM64	NM_001008495	exon2	c.T863C	p.L288P	GAATTCAGAAGCT	.	307.0	53.0	141.0	0.0	.	90
TMPRSS11B	132724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	69097023	69097023	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TMPRSS11B	NM_182502	exon7	c.584delC	p.A195fs	GGCCATGCCCCCT	.	244.0	76.0	187.0	0.0	.	91
TRIM22	10346	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5730736	5730736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRIM22	NM_006074	exon8	c.G1355A	p.G452D	AGGCAGGCATTGT	.	321.0	83.0	314.0	0.0	.	90
TRIM66	9866	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8664672	8664672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRIM66	NM_014818	exon8	c.T671C	p.I224T	AACACAATCTGAC	.	30.0	14.0	53.0	0.0	.	68
TRIO	7204	hgsc.bcm.edu;bcgsc.ca	37	5	14474101	14474101	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRIO	NM_007118	exon40	c.5980-2A>G	.	AATTGTAGGGCTA	.	92.0	4.0	110.0	0.0	.	562
TRIO	7204	hgsc.bcm.edu;bcgsc.ca	37	5	14502746	14502746	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRIO	NM_007118	exon54	c.T8391C	p.S2797S	CTACAGTGAAGTG	.	69.0	5.0	60.0	0.0	.	562
TRIOBP	11078	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38121089	38121089	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRIOBP	NM_001039141	exon7	c.T2526A	p.D842E	ACGAGATAACCTC	.	255.0	99.0	331.0	0.0	.	136
TSEN34	79042	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54697194	54697194	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TSEN34	NM_024075	exon5	c.C910G	p.L304V	ACCTCCCTGCAAT	.	92.0	17.0	127.0	0.0	.	90
TTC4	7268	hgsc.bcm.edu;bcgsc.ca	37	1	55194027	55194027	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TTC4	NM_004623	exon6	c.A603G	p.E201E	AATTGAACAGAGG	.	165.0	7.0	72.0	0.0	.	90
TXNL1	9352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54293689	54293689	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TXNL1	NM_004786	exon3	c.99-1G>T	.	CCACACCTGTTAG	.	227.0	73.0	215.0	0.0	.	90
UBR4	23352	hgsc.bcm.edu;bcgsc.ca	37	1	19518865	19518865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UBR4	NM_020765	exon11	c.A1211G	p.Q404R	AAATTCTGATAGT	.	64.0	4.0	114.0	0.0	.	612
USHBP1	83878	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17373479	17373479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	USHBP1	NM_031941	exon4	c.G524A	p.R175H	GCCAGGCGAGCTG	.	26.0	17.0	73.0	0.0	.	91
USP40	55230	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234431822	234431822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	USP40	NM_018218	exon15	c.A2228G	p.D743G	CTGTTATCATCAT	.	285.0	87.0	296.0	1.0	.	455
UTRN	7402	ucsc.edu;bcgsc.ca	37	6	145093056	145093056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UTRN	NM_007124	exon58	c.A8509G	p.T2837A	ACACAGACCACCT	.	46.0	5.0	59.0	0.0	.	95
VCAN	1462	hgsc.bcm.edu;bcgsc.ca	37	5	82807955	82807955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	VCAN	NM_004385	exon6	c.T782C	p.F261S	GTAAATTCACCTT	.	65.0	5.0	59.0	0.0	.	238
VWA3B	200403	hgsc.bcm.edu;bcgsc.ca	37	2	98750292	98750292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	VWA3B	NM_144992	exon7	c.A878G	p.H293R	GATTCCACGCATT	.	78.0	4.0	89.0	0.0	.	139
WDFY1	57590	hgsc.bcm.edu;bcgsc.ca	37	2	224746759	224746759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WDFY1	NM_020830	exon10	c.T964C	p.C322R	TCCCGCAGACAGC	.	72.0	4.0	58.0	0.0	.	226
WDR5B	54554	hgsc.bcm.edu;bcgsc.ca	37	3	122133628	122133628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WDR5B	NM_019069	exon1	c.G748A	p.G250S	TATGACCAGTGTA	.	114.0	5.0	169.0	0.0	.	93
WNK1	65125	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1009715	1009715	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WNK1	NM_001184985	exon26	c.A7302C	p.P2434P	CATCCCAGAGTCC	.	143.0	60.0	159.0	0.0	.	916
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61706090	61706090	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	XPO1	NM_003400	exon25	c.T3081G	p.G1027G	GTCTTCACCTGCA	.	189.0	59.0	241.0	0.0	.	229
ZDHHC9	51114	ucsc.edu;bcgsc.ca	37	X	128946713	128946713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZDHHC9	NM_001008222	exon7	c.A758G	p.N253S	GTCTGGTTGAGAG	.	42.0	4.0	43.0	0.0	.	131
ZFP112	7771	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44833097	44833097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZFP112	NM_001083335	exon5	c.G1231A	p.E411K	TCTCTTCAGTGTG	.	153.0	50.0	223.0	0.0	.	95
ZFR	51663	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	32444759	32444759	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZFR	NM_016107	exon1	c.T6G	p.I2M	TATGGGAATCATG	.	326.0	36.0	223.0	0.0	.	90
ZFYVE1	53349	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73437723	73437723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZFYVE1	NM_021260	exon12	c.A2201G	p.K734R	TGGTGCTTGGAGA	.	94.0	33.0	90.0	0.0	.	91
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	209217489	209217490	+	Missense_Mutation	DNP	GG	GG	TC	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	.	.	.	p.G1943S	TTCTACGGGAGAA	.	53.0	15.0	67.0	0.0	.	.