Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ABCA1 19 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 107584777 107584777 + Missense_Mutation SNP A A G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ABCA1 NM_005502 exon19 c.T2828C p.M943T TCTTACATGGTGG . 86.0 43.0 107.0 0.0 . 1016 ABCA2 20 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 139904510 139904510 + Silent SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ABCA2 NM_212533 exon42 c.C6510T p.F2170F CTCGTCGAACAGC . 39.0 19.0 37.0 0.0 . 90 ACOT2 10965 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 74036182 74036182 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ACOT2 NM_006821 exon1 c.C238A p.P80T GACGAACCGGTGC . 47.0 41.0 61.0 0.0 . 91 ACP1 52 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 277266 277266 + Missense_Mutation SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ACP1 NM_007099 exon6 c.G439A p.V147I CAGTGTGTCAGGT . 365.0 30.0 400.0 0.0 . 523 ACTN1 87 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 69350972 69350972 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ACTN1 NM_001102 exon14 c.G1548T p.K516N AGCCCGCTTGGCA . 122.0 111.0 251.0 1.0 . 514 ACTN1 87 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 69350974 69350974 + Missense_Mutation SNP T T C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ACTN1 NM_001102 exon14 c.A1546G p.K516E CCCGCTTGGCATA . 122.0 110.0 260.0 0.0 . 514 ACTN2 88 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 236881238 236881238 + Silent SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ACTN2 NM_001103 exon2 c.C207A p.G69G GAATGGCCTTAAG . 345.0 155.0 392.0 0.0 . 95 ADAM12 8038 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 127708372 127708372 + Frame_Shift_Del DEL G G - novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ADAM12 NM_003474 exon22 c.2561delC p.P854fs TTCTGAGGGGGGT . 92.0 37.0 106.0 0.0 . 716 ALK 238 hgsc.bcm.edu;bcgsc.ca 37 2 29443612 29443612 + Frame_Shift_Del DEL C C - novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ALK NM_004304 exon23 c.3605delG p.G1202fs AGGTCTCCCCCCG . 115.0 42.0 89.0 0.0 . 3833 AMHR2 269 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 53823987 53823987 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . AMHR2 NM_020547 exon10 c.C1346A p.T449N CCCCTACCTCTGA . 218.0 110.0 219.0 0.0 . 628 ANKH 56172 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 14716830 14716832 + In_Frame_Del DEL AGG AGG - novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 AGG AGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ANKH NM_054027 exon9 c.1124_1126del p.375_376del GGAAGAAGGAGAA . 149.0 41.0 137.0 0.0 . 91 ANKRD46 157567 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 101540171 101540171 + Silent SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ANKRD46 NM_001270378 exon4 c.C372T p.V124V TCGGATGACATCT . 270.0 110.0 374.0 1.0 . 22 ANO4 121601 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 101491695 101491695 + Missense_Mutation SNP T T A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ANO4 NM_178826 exon20 c.T1873A p.W625R CAGACCTGGAATA . 231.0 112.0 316.0 0.0 . 96 AP3M2 10947 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 42022613 42022614 + Frame_Shift_Ins INS - - G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . AP3M2 NM_001134296 exon6 c.608_609insG p.Q203fs AGATCCAGGGGGT . 308.0 138.0 299.0 0.0 . 90 APC 324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 112177044 112177044 + Missense_Mutation SNP T T C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . APC NM_001127510 exon17 c.T5753C p.I1918T AGCCAATAAATCG . 267.0 134.0 254.0 0.0 . 12026 APOB 338 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 21228142 21228157 + Frame_Shift_Del DEL GGAGGGAATCTCAATG GGAGGGAATCTCAATG - novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 GGAGGGAATCTCAATG GGAGGGAATCTCAATG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . APOB NM_000384 exon26 c.11583_11598del p.3861_3866del CTTAATGGAGGGA . 150.0 33.0 244.0 0.0 . 175 AR 367 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 66766453 66766453 + Missense_Mutation SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . AR NM_000044 exon1 c.G1465A p.G489R CCTCAGGGGCTGG . 54.0 21.0 48.0 0.0 . 661 ARHGEF10L 55160 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 17991069 17991069 + Missense_Mutation SNP A A C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ARHGEF10L NM_018125 exon26 c.A2988C p.E996D CCTGGAAGCCACC . 60.0 28.0 62.0 0.0 . 292 ARSG 22901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 66303755 66303755 + Missense_Mutation SNP A A G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ARSG NM_001267727 exon2 c.A121G p.I41V GTGATTATTTTGG . 753.0 240.0 519.0 0.0 . 91 BAG4 9530 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 38067967 38067967 + Missense_Mutation SNP A A C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . BAG4 NM_004874 exon5 c.A1330C p.K444Q GTTTGTAAGATTC . 135.0 54.0 168.0 0.0 . 228 BCL11B 64919 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 99640713 99640713 + Silent SNP G G C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . BCL11B NM_138576 exon4 c.C2460G p.G820G CCGCTCGCCGGTG . 85.0 38.0 71.0 1.0 . 1147 BTBD1 53339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 83687553 83687553 + Missense_Mutation SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . BTBD1 NM_025238 exon7 c.G1196A p.S399N TCACAACTAAAGC . 332.0 166.0 388.0 0.0 . 91 C8orf31 286122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 144124680 144124680 + Splice_Site SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . C8orf31 NM_173687 exon3 c.186+1G>A . GCACTTGTAAGTT . 29.0 11.0 27.0 0.0 . 91 CABIN1 23523 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 24472172 24472172 + Missense_Mutation SNP A A T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CABIN1 NM_001199281 exon19 c.A2687T p.H896L CAGCCCACGAGTA . 297.0 147.0 270.0 0.0 . 94 CACNA1S 779 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 201046155 201046155 + Missense_Mutation SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CACNA1S NM_000069 exon12 c.G1720A p.A574T GGAGGGCGAAGAT . 646.0 400.0 420.0 1.0 . 94 CALR 811 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 13054680 13054680 + Nonsense_Mutation SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CALR NM_004343 exon9 c.G1207T p.E403X AAGGAGGAAGATG . 388.0 192.0 424.0 1.0 . 91 CARD11 84433 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 2979547 2979547 + Missense_Mutation SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CARD11 NM_032415 exon6 c.C700T p.H234Y ACCGGTGCTTTAG . 350.0 169.0 422.0 0.0 . 870 CC2D1A 54862 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 14038069 14038069 + Silent SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CC2D1A NM_017721 exon22 c.G2307A p.E769E CCGGGAGATCCTT . 221.0 9.0 217.0 0.0 . 90 CCBE1 147372 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 18 57364549 57364549 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CCBE1 NM_133459 exon1 c.G26T p.G9V GCTCCTCCCCGGC . 52.0 25.0 32.0 0.0 . 93 CCDC102A 92922 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 57549306 57549306 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CCDC102A NM_033212 exon8 c.G1470T p.E490D CGTCTGCTCGTCC . 60.0 57.0 92.0 1.0 . 91 CCDC129 223075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 31683115 31683115 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . . NM_001257968 exon11 c.C2209A p.Q737K ATGACCCAGATGT . 189.0 88.0 190.0 0.0 . . CCDC59 29080 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 82752141 82752141 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CCDC59 NM_014167 exon1 c.G15T p.R5S GGACCGCCTCACC . 53.0 24.0 38.0 0.0 . 90 CDIPT 10423 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 29873915 29873915 + Missense_Mutation SNP A A G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CDIPT NM_006319 exon2 c.T170C p.L57P TGATTAAGAGCGC . 138.0 63.0 124.0 0.0 . 90 CENPE 1062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 104079539 104079539 + Missense_Mutation SNP T T A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CENPE NM_001813 exon24 c.A2951T p.K984I TTCGATTTTAGTG . 90.0 77.0 279.0 0.0 . 277 CHD9 80205 hgsc.bcm.edu;bcgsc.ca 37 16 53352155 53352156 + Frame_Shift_Ins INS - - AAAAAGAC novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CHD9 NM_025134 exon37 c.7568_7569insAAAAAGAC p.Q2523fs CCAAACAAAAAAG . 50.0 26.0 370.0 0.0 . 272 CHL1 10752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 430967 430967 + Silent SNP C C G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CHL1 NM_001253388 exon18 c.C2280G p.G760G ACCAGGCCTAGAG . 159.0 69.0 187.0 0.0 . 583 CHRM2 1129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 136699983 136699983 + Missense_Mutation SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CHRM2 NM_001006632 exon3 c.G371T p.C124F ACTTCTGTGTCAC . 315.0 160.0 389.0 1.0 . 94 CHSY1 22856 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 101718497 101718497 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CHSY1 NM_014918 exon3 c.G1505T p.G502V AAGGATCCAGATT . 106.0 48.0 146.0 1.0 . 90 CNKSR2 22866 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 21627708 21627708 + Missense_Mutation SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CNKSR2 NM_014927 exon20 c.G2665T p.A889S GGGGAGGCAGCAG . 29.0 21.0 22.0 0.0 . 625 CPNE7 27132 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 89661808 89661808 + Missense_Mutation SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CPNE7 NM_014427 exon16 c.G1561T p.V521L GACGGCGTGGTGA . 114.0 63.0 132.0 1.0 . 90 CR1 1378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 207760833 207760833 + Missense_Mutation SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CR1 NM_000651 exon34 c.C5633T p.P1878L GCCGTCCTGGGTA . 534.0 241.0 647.0 1.0 . 93 CSMD3 114788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 113519006 113519006 + Missense_Mutation SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CSMD3 NM_198123 exon29 c.C4809A p.N1603K AGGGAAGTTTGGT . 280.0 112.0 290.0 0.0 . 1132 CSPP1 79848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 68105731 68105731 + Silent SNP T T G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CSPP1 NM_024790 exon28 c.T3348G p.G1116G AGATGGTCTCTCT . 213.0 98.0 221.0 0.0 . 138 CYP26B1 56603 ucsc.edu;bcgsc.ca;mdanderson.org 37 2 72371121 72371121 + Silent SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . CYP26B1 NM_019885 exon2 c.C426T p.R142R TACCTTGCGCTTG . 185.0 76.0 257.0 2.0 . 92 DEFA4 1669 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 6793612 6793612 + Missense_Mutation SNP G G C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . DEFA4 NM_001925 exon3 c.C224G p.T75R AGTTCTGTTCGCC . 102.0 45.0 67.0 0.0 . 153 DLG3 1741 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 69669639 69669639 + Silent SNP A A G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . DLG3 NM_021120 exon4 c.A633G p.R211R GGTGCGATTGGTG . 101.0 49.0 111.0 1.0 . 219 DOT1L 84444 broad.mit.edu;mdanderson.org 37 19 2226716 2226716 + Missense_Mutation SNP C C G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . DOT1L NM_032482 exon27 c.C4196G p.P1399R GCGGGCCCACGGA . 15.0 6.0 11.0 0.0 . 132 DOT1L 84444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 2217053 2217053 + Silent SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . DOT1L NM_032482 exon21 c.G2508A p.G836G CCCTGGGGCCTTG . 43.0 17.0 39.0 0.0 . 132 DSCAM 1826 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 41505791 41505791 + Silent SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . DSCAM NM_001271534 exon19 c.C3552A p.T1184T CTCTTTGGTCCGG . 146.0 59.0 159.0 0.0 . 101 DUS4L 11062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 107216972 107216972 + Missense_Mutation SNP T T C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . DUS4L NM_001270419 exon7 c.T641C p.I214T CTGTAATTGCTAA . 179.0 81.0 246.0 0.0 . 90 DUSP6 1848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 89744457 89744457 + Missense_Mutation SNP T T C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . DUSP6 NM_001946 exon2 c.A746G p.N249S CCTGCGTTCTCAA . 165.0 72.0 206.0 0.0 . 846 DYNC1H1 1778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 102478246 102478246 + Missense_Mutation SNP A A T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . DYNC1H1 NM_001376 exon33 c.A6653T p.H2218L TCAATCATGGCCT . 118.0 61.0 131.0 0.0 . 98 EBF2 64641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 25715971 25715971 + Silent SNP G G A rs151033193 TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . EBF2 NM_022659 exon14 c.C1392T p.S464S CGTGGAGCTGGAA . 400.0 185.0 467.0 0.0 G|0.999;A|0.001 26 EFCAB5 374786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 28295950 28295950 + Missense_Mutation SNP A A G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . EFCAB5 NM_198529 exon4 c.A332G p.E111G AGCCAGAGCACAC . 213.0 113.0 242.0 1.0 . 70 EHBP1 23301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 63092103 63092103 + Missense_Mutation SNP A A T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . EHBP1 NM_015252 exon10 c.A1100T p.D367V AATTGGATGAGTA . 86.0 36.0 138.0 0.0 . 154 ELAVL1 1994 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 8028565 8028565 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ELAVL1 NM_001419 exon6 c.G783T p.W261C CATCTGCCAGAGG . 194.0 105.0 247.0 0.0 . 90 ELTD1 64123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 79412048 79412048 + Missense_Mutation SNP T T C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ELTD1 NM_022159 exon3 c.A236G p.E79G CTTCCTTCTGTGT . 401.0 197.0 443.0 0.0 . 24 EPC2 26122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 149519486 149519486 + Missense_Mutation SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . EPC2 NM_015630 exon5 c.G802T p.V268F TTAGAAGTTGTGG . 347.0 143.0 538.0 0.0 . 137 EPHA4 2043 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 222347238 222347238 + Silent SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . EPHA4 NM_004438 exon5 c.C1152A p.V384V GTAGTGGACCCCA . 293.0 133.0 363.0 0.0 . 1441 EPHA6 285220 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 96706423 96706423 + Missense_Mutation SNP T T G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . EPHA6 NM_001080448 exon3 c.T700G p.F234V ATTAAATTCAAGC . 153.0 80.0 190.0 0.0 . 1561 FAH 2184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 80465405 80465405 + Silent SNP G G A rs202041382 TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . FAH NM_000137 exon9 c.G756A p.G252G CCTTGGGAAGAGT . 217.0 103.0 271.0 0.0 G|0.999;A|0.000 90 FAM102B 284611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 109148855 109148855 + Missense_Mutation SNP G G C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . FAM102B NM_001010883 exon3 c.G269C p.G90A TAAAAGGTGGAAA . 283.0 121.0 361.0 0.0 . 135 FBN1 2200 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 48796007 48796007 + Missense_Mutation SNP T T G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . FBN1 NM_000138 exon17 c.A2090C p.Q697P CACGGCTGGCAAG . 223.0 96.0 259.0 0.0 . 92 FBXO47 494188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 37093476 37093476 + Missense_Mutation SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . FBXO47 NM_001008777 exon11 c.C1311A p.F437L CTTATGGAAGTTA . 278.0 165.0 183.0 0.0 . 90 FDX1L 112812 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 10426560 10426560 + Missense_Mutation SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . FDX1L NM_001031734 exon1 c.C113T p.A38V CCCAGCGCCACCC . 71.0 28.0 79.0 0.0 . 23 FREM1 158326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 14816837 14816837 + Missense_Mutation SNP T T C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . FREM1 NM_144966 exon16 c.A2579G p.D860G AGGTCATCCTGAA . 69.0 20.0 63.0 0.0 . 138 GABRG1 2565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 46060339 46060339 + Nonsense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . GABRG1 NM_173536 exon7 c.G811T p.G271X AATATCCCATTCT . 445.0 192.0 645.0 1.0 . 92 GADL1 339896 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 3 30827849 30827849 + Nonsense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . GADL1 NM_207359 exon13 c.G1300T p.E434X TTACTTCCATCAG . 292.0 127.0 313.0 0.0 . 90 GLB1 2720 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 33099714 33099714 + Silent SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . GLB1 NM_000404 exon6 c.G600A p.L200L GAAGCGCAGGTAG . 246.0 91.0 323.0 2.0 . 135 GNB2L1 10399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 180666567 180666567 + Missense_Mutation SNP C C G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . GNB2L1 NM_006098 exon4 c.G445C p.E149Q CCCACTCTGAGTG . 94.0 43.0 106.0 0.0 . 227 GPR141 353345 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 37780403 37780403 + Silent SNP T T C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . GPR141 NM_181791 exon1 c.T408C p.S136S TGCCAGTGCTGGC . 258.0 108.0 314.0 1.0 . 93 GSDMD 79792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 144644198 144644198 + Missense_Mutation SNP C C G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . GSDMD NM_001166237 exon11 c.C893G p.S298C CCATCTCCAAGGA . 35.0 17.0 26.0 0.0 . 90 GUCY2C 2984 broad.mit.edu;bcgsc.ca 37 12 14767834 14767834 + Missense_Mutation SNP T T C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . GUCY2C NM_004963 exon26 c.A3014G p.D1005G TTCTGGTCCTTCA . 210.0 9.0 202.0 0.0 . 338 HID1 283987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 17 72949120 72949120 + Nonsense_Mutation SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . . NM_030630 exon16 c.G2033A p.W678X GGGCTCCACTGCC . 256.0 83.0 124.0 0.0 . . HK1 3098 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 71136836 71136836 + Missense_Mutation SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . HK1 NM_033498 exon11 c.C1034T p.A345V TGTCAGCCATCGA . 95.0 36.0 127.0 0.0 . 252 HMGCS1 3157 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 43298941 43298941 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . HMGCS1 NM_001098272 exon3 c.G127T p.D43Y CAGCATCTACACC . 143.0 73.0 152.0 1.0 . 90 HOXC10 3226 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 54382961 54382961 + Missense_Mutation SNP A A G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . HOXC10 NM_017409 exon2 c.A760G p.K254E GAGATAAAGGCAG . 127.0 61.0 174.0 0.0 . 91 IGLON5 402665 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 51830117 51830117 + Missense_Mutation SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . . NM_001101372 exon5 c.C611T p.A204V ACTCGGCGCCCGA . 79.0 32.0 69.0 1.0 . . IL36B 27177 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 113788640 113788640 + Missense_Mutation SNP G G T rs34754959 byfrequency;alternate_allele TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . IL36B NM_173178 exon3 c.C106A p.R36S TGCTGCGGCTAAG . 129.0 64.0 134.0 0.0 G|0.989;A|0.011 23 IL4I1 259307 hgsc.bcm.edu;broad.mit.edu 37 19 50393089 50393089 + Silent SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . IL4I1 NM_172374 exon10 c.G1608A p.T536T GCTGGCCGTGTCC . 147.0 6.0 156.0 0.0 . 523 INPP5D 3635 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 234112784 234112784 + Missense_Mutation SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . INPP5D . . . . TGACCTGGGGAAG . 116.0 37.0 85.0 0.0 . 652 ISL2 64843 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 76632729 76632729 + Silent SNP C C G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ISL2 NM_145805 exon4 c.C624G p.T208T GCGGACCTGCTAC . 125.0 28.0 77.0 0.0 . 90 IYD 389434 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 150713484 150713493 + Frame_Shift_Del DEL CAGCCCCGAG CAGCCCCGAG - novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 CAGCCCCGAG CAGCCCCGAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . IYD NM_001164695 exon3 c.374_383del p.125_128del CAGGAACAGCCCC . 51.0 12.0 65.0 0.0 . 92 IZUMO1 284359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 49248991 49248991 + Silent SNP A A G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . IZUMO1 NM_182575 exon2 c.T126C p.P42P GTGGCCAGGCAGG . 356.0 161.0 378.0 0.0 . 91 JPH4 84502 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 14 24040535 24040535 + Nonsense_Mutation SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . JPH4 NM_001146028 exon5 c.C1405T p.Q469X AGGGTTGGCGGGA . 48.0 21.0 51.0 0.0 . 92 KCNU1 157855 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 36691164 36691173 + Frame_Shift_Del DEL TGAGGCGAGT TGAGGCGAGT - novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 TGAGGCGAGT TGAGGCGAGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . KCNU1 NM_001031836 exon11 c.1199_1208del p.400_403del AGGATCTGAGGCG . 393.0 116.0 692.0 0.0 . 23 KIF19 124602 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 72345442 72345442 + Frame_Shift_Del DEL C C - novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . KIF19 NM_153209 exon10 c.1167delC p.G389fs GCGGGGCCAGGCC . 168.0 96.0 129.0 0.0 . 90 KIF9 64147 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 47307360 47307360 + Missense_Mutation SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . KIF9 NM_182902 exon8 c.G776A p.G259D ACTTGGCCCTCAG . 144.0 66.0 192.0 1.0 . 91 KLK6 5653 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 51465087 51465087 + Silent SNP A A T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . KLK6 NM_001012964 exon5 c.T495A p.R165R CTCCTCACGGGAC . 149.0 65.0 121.0 0.0 . 650 KLK8 11202 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 51503358 51503358 + Silent SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . KLK8 NM_144505 exon4 c.G522A p.Q174Q GGATGCCTGGTCA . 97.0 53.0 108.0 0.0 . 604 KRT34 3885 hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 17 39534380 39534380 + Nonsense_Mutation SNP G G T rs138365209 byfrequency;alternate_allele TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . KRT34 NM_021013 exon7 c.C1242A p.C414X GGTGGCGCATGGG . 175.0 60.0 114.0 0.0 G|0.999;A|0.001 90 KRT6B 3854 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 52841356 52841356 + Silent SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . KRT6B NM_005555 exon8 c.C1426T p.L476L CATTCAGCCTGTG . 205.0 90.0 219.0 0.0 . 92 KRT75 9119 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 52822123 52822123 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . KRT75 NM_004693 exon7 c.G1299T p.E433D CTGGTACTCACGC . 104.0 50.0 108.0 0.0 . 90 KRTDAP 388533 ucsc.edu;bcgsc.ca 37 19 35979362 35979362 + Missense_Mutation SNP T T C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . KRTDAP NM_207392 exon4 c.A194G p.N65S TGCCAGTTCAGGA . 54.0 5.0 55.0 0.0 . 90 LNPEP 4012 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 96332096 96332096 + Missense_Mutation SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . LNPEP NM_005575 exon7 c.G1410T p.W470C CCAGTGGTTTGGC . 345.0 178.0 456.0 0.0 . 229 LOC100499484 0 broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 100056292 100056292 + RNA SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . . . . . . GGGTGCCTGCCTT . 151.0 57.0 161.0 1.0 . . LRP1B 53353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 142567848 142567848 + Missense_Mutation SNP A A T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . LRP1B NM_018557 exon2 c.T205A p.C69S ACTCACAGGTATC . 385.0 171.0 554.0 0.0 . 311 LRP4 4038 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 46896621 46896621 + Missense_Mutation SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . LRP4 NM_002334 exon28 c.G3959A p.C1320Y TGGGAGCAGCCGC . 51.0 15.0 52.0 0.0 . 94 LRRIQ1 84125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 85546125 85546125 + Nonsense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . LRRIQ1 NM_001079910 exon20 c.C4397A p.S1466X TTCTTTCAAACCA . 225.0 102.0 253.0 0.0 . 95 LYZL6 57151 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 34261843 34261843 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . LYZL6 NM_020426 exon4 c.G404T p.G135V GGCCGGCCTGAAC . 115.0 69.0 65.0 0.0 . 90 MAP2 4133 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 210559239 210559239 + Missense_Mutation SNP C C A rs184529696 alternate_allele TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . MAP2 NM_002374 exon7 c.C2345A p.A782E CTCAAGCGGAGAT . 87.0 45.0 110.0 0.0 C|0.994;T|0.006 591 MAST2 23139 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 46500283 46500283 + Silent SNP A A G rs139679191 by1000genomes;alternate_allele TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . MAST2 NM_015112 exon29 c.A3942G p.T1314T GCACACACGGCCC . 300.0 20.0 193.0 0.0 A|0.999;T|0.001 581 MGAM 8972 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 141731507 141731507 + Missense_Mutation SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . MGAM NM_004668 exon13 c.G1498T p.D500Y TTTCCTGATTATA . 396.0 171.0 463.0 0.0 . 70 MRVI1 10335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 10651167 10651167 + Silent SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . MRVI1 NM_001206880 exon5 c.G492T p.L164L TTCTTCCAGCAGC . 340.0 158.0 353.0 0.0 . 25 MUC16 94025 hgsc.bcm.edu;bcgsc.ca 37 19 9045850 9045853 + Frame_Shift_Del DEL AGTT AGTT - novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 AGTT AGTT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . MUC16 NM_024690 exon5 c.35778_35781del p.11926_11927del AACTGAAGTTACA . 241.0 89.0 320.0 0.0 . 566 MXRA8 54587 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 1289296 1289296 + Missense_Mutation SNP T T A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . MXRA8 NM_032348 exon9 c.A1235T p.N412I AGGATGTTGTTTT . 83.0 43.0 80.0 0.0 . 90 MYC 4609 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 128751001 128751001 + Missense_Mutation SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . MYC NM_002467 exon2 c.G538A p.A180T AACCCCGCCCGCG . 44.0 27.0 29.0 0.0 . 2002 MYO18B 84700 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 26423432 26423432 + Missense_Mutation SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . MYO18B NM_032608 exon43 c.C7492T p.P2498S CCGGAGCCCAAGG . 66.0 33.0 68.0 0.0 . 142 MYT1 4661 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 62839764 62839764 + Missense_Mutation SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . MYT1 NM_004535 exon7 c.G1215T p.Q405H CGAGCAGAGCCAG . 63.0 25.0 53.0 0.0 . 704 N4BP2L2 10443 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 13 33017687 33017687 + Silent SNP T T C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . N4BP2L2 NM_033111 exon7 c.A987G p.K329K GAGATTTTTATCT . 331.0 175.0 379.0 0.0 . 68 NAA25 80018 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 112499100 112499100 + Missense_Mutation SNP A A T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . NAA25 NM_024953 exon12 c.T1242A p.H414Q ACACAAATGTTGC . 202.0 95.0 163.0 0.0 . 155 NARG2 79664 broad.mit.edu;ucsc.edu;mdanderson.org 37 15 60758888 60758888 + Nonsense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . NARG2 NM_024611 exon5 c.G433T p.E145X TAACTTCTTCGTT . 82.0 32.0 114.0 1.0 . 227 NAV3 89795 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 78513202 78513202 + Missense_Mutation SNP T T G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . NAV3 NM_014903 exon15 c.T3226G p.S1076A GGGTCATCTGCCA . 149.0 55.0 201.0 1.0 . 279 NCOR1 9611 hgsc.bcm.edu;bcgsc.ca 37 17 15973501 15973501 + Silent SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . NCOR1 NM_001190440 exon30 c.C4539A p.P1513P CATCATGGGTGAG . 84.0 68.0 154.0 0.0 . 229 NCOR1 9611 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 15973499 15973499 + Frame_Shift_Del DEL A A - novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . NCOR1 NM_001190440 exon30 c.4541delT p.M1514fs TTCATCATGGGTG . 82.0 69.0 150.0 0.0 . 229 NECAB1 64168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 91946573 91946573 + Silent SNP G G C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . NECAB1 NM_022351 exon9 c.G735C p.G245G TGAAGGGAATACT . 341.0 126.0 581.0 0.0 . 23 NGEF 25791 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 233759548 233759548 + Missense_Mutation SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . NGEF NM_019850 exon6 c.G907A p.E303K TCCGCTCGTTCTC . 104.0 51.0 98.0 1.0 . 313 NHS 4810 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 17710579 17710579 + Frame_Shift_Del DEL C C - novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . NHS NM_198270 exon3 c.843delC p.H281fs CCGTCACTTTTTA . 196.0 88.0 272.0 0.0 . 197 NLGN1 22871 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 173993239 173993239 + Frame_Shift_Del DEL G G - novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . NLGN1 NM_014932 exon5 c.781delG p.G261fs GGATCTGGTGCTG . 324.0 96.0 266.0 0.0 . 231 NOD2 64127 ucsc.edu;bcgsc.ca;mdanderson.org 37 16 50744820 50744820 + Missense_Mutation SNP G G C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . NOD2 NM_022162 exon4 c.G998C p.C333S TCAGCTGCCGGCA . 134.0 64.0 126.0 2.0 . 231 NPC1L1 29881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 44579861 44579861 + Silent SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . NPC1L1 NM_001101648 exon2 c.G135A p.L45L TCCAGACAGCTCT . 122.0 49.0 115.0 0.0 . 94 OR1L8 138881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 125329852 125329852 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . OR1L8 NM_001004454 exon1 c.G905T p.R302M AGCTTCCTCAGGC . 102.0 46.0 156.0 0.0 . 70 OR4A5 81318 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 51412172 51412172 + Missense_Mutation SNP A A G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . OR4A5 NM_001005272 exon1 c.T224C p.I75T GGAGAAATGGTAG . 430.0 188.0 482.0 0.0 . 92 OR4C3 256144 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 48346884 48346884 + Missense_Mutation SNP T T G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . OR4C3 NM_001004702 exon1 c.T392G p.F131C CTCATTTTTTGGG . 857.0 163.0 992.0 1.0 . 69 OR51V1 283111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 5221902 5221902 + Missense_Mutation SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . OR51V1 NM_001004760 exon1 c.C29T p.S10L CTTACTGAAGTAA . 121.0 54.0 164.0 0.0 . 69 OR5B17 219965 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 58125852 58125852 + Missense_Mutation SNP C C G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . OR5B17 NM_001005489 exon1 c.G691C p.G231R GGTATCCCTTACC . 91.0 43.0 147.0 0.0 . 71 PCM1 5108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 17794745 17794745 + Missense_Mutation SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . PCM1 NM_006197 exon4 c.G199A p.E67K TCTCCGGAGTCGT . 281.0 130.0 345.0 0.0 . 742 PDS5A 23244 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 39928476 39928476 + Missense_Mutation SNP T T C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . . NM_001100399 exon4 c.A348G p.I116M CAAAAATATGTCC . 180.0 79.0 278.0 0.0 . . PITPNM2 57605 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 12 123474487 123474487 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . PITPNM2 NM_020845 exon17 c.G2578T p.D860Y GCGCATCGGGGGC . 20.0 9.0 15.0 0.0 . 228 PITPNM2 57605 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 123497236 123497236 + Silent SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . PITPNM2 NM_020845 exon4 c.C339T p.T113T ATAAAAGGTTTCA . 116.0 48.0 145.0 0.0 . 228 PLXNA4 91584 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 131825502 131825502 + Missense_Mutation SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . PLXNA4 NM_020911 exon30 c.G5294A p.S1765N GTGATGCTGTTCT . 165.0 75.0 216.0 2.0 . 91 PMEPA1 56937 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 20 56227370 56227370 + Silent SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . PMEPA1 NM_020182 exon4 c.G603A p.R201R GCCCAGCCTGGCA . 34.0 20.0 17.0 0.0 . 227 POLQ 10721 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 121251856 121251856 + Missense_Mutation SNP T T C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . POLQ NM_199420 exon6 c.A941G p.E314G ATGGGCTCAAATT . 495.0 228.0 523.0 0.0 . 664 POSTN 10631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 38164531 38164531 + Missense_Mutation SNP T T A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . POSTN NM_006475 exon4 c.A419T p.E140V CAAGCCTCATTAC . 57.0 23.0 93.0 0.0 . 516 POU2F2 5452 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 42636560 42636560 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . POU2F2 NM_002698 exon1 c.G4T p.V2F AGTGAACCATGCT . 92.0 42.0 69.0 0.0 . 227 POU5F2 134187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 93076516 93076516 + Missense_Mutation SNP C C G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . . NM_153216 exon1 c.G754C p.D252H CCACATCCTTCTG . 250.0 117.0 257.0 0.0 . . PRKG1 5592 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 54048601 54048601 + Silent SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . PRKG1 NM_006258 exon15 c.C1825T p.L609L AAAAAACTATGCA . 135.0 64.0 229.0 0.0 . 523 PSD2 84249 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 139189077 139189077 + Missense_Mutation SNP C C T rs146689892 TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . PSD2 NM_032289 exon2 c.C52T p.R18C GCCACCCGTGACC . 139.0 63.0 122.0 0.0 C|1.000;T|0.000 91 PTPN3 5774 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 112185130 112185130 + Missense_Mutation SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . PTPN3 NM_002829 exon13 c.C1004T p.S335L TTTACCGACCTGA . 169.0 54.0 193.0 0.0 . 229 RBPMS2 348093 ucsc.edu;bcgsc.ca 37 15 65041670 65041670 + Missense_Mutation SNP T T C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . RBPMS2 NM_194272 exon4 c.A227G p.D76G CGGCTGTCAAAGA . 39.0 4.0 47.0 0.0 . 90 RFX6 222546 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 117198538 117198538 + Missense_Mutation SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . RFX6 NM_173560 exon1 c.G100A p.G34S CTCCTGGGCAAGG . 108.0 49.0 63.0 0.0 . 93 RGPD4 285190 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 108487515 108487515 + Frame_Shift_Del DEL G G - novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . RGPD4 NM_182588 exon20 c.3055delG p.G1019fs ACTTCCGGTGACT . 317.0 121.0 405.0 0.0 . 2 RHPN1 114822 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 144460480 144460480 + Silent SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . RHPN1 NM_052924 exon5 c.C423T p.Y141Y CTCCTACGAGGCA . 77.0 37.0 59.0 0.0 . 67 RIN2 54453 ucsc.edu;bcgsc.ca 37 20 19870240 19870240 + Missense_Mutation SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . RIN2 NM_001242581 exon2 c.G142T p.G48W TCGCTGGGGGAAA . 35.0 4.0 64.0 0.0 . 660 RNF145 153830 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 158603765 158603765 + Nonsense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . RNF145 NM_001199380 exon5 c.G586T p.E196X TTGTCTCCAAAGG . 788.0 317.0 873.0 1.0 . 525 RNF145 153830 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 158603766 158603766 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . RNF145 NM_001199380 exon5 c.G585T p.L195F TGTCTCCAAAGGA . 785.0 317.0 868.0 2.0 . 525 SDS 10993 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 113835135 113835135 + Missense_Mutation SNP A A G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SDS NM_006843 exon6 c.T488C p.I163T AGCGCGATGGCCC . 163.0 75.0 151.0 1.0 . 91 SERTAD1 29950 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 40929016 40929016 + Silent SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SERTAD1 NM_013376 exon2 c.G438T p.G146G TGCTCCCCCGATG . 40.0 19.0 56.0 0.0 . 226 SGK223 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 8185737 8185737 + Missense_Mutation SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . . NM_001080826 exon4 c.C2555A p.T852N ACGTTGGTTTCCG . 88.0 43.0 72.0 0.0 . . SH2D4A 63898 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 19250999 19250999 + Missense_Mutation SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SH2D4A NM_022071 exon9 c.G1219T p.G407C TTCCTGGGCGTGG . 194.0 111.0 205.0 2.0 . 90 SH3BP2 6452 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 2814128 2814128 + Missense_Mutation SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SH3BP2 NM_001145855 exon1 c.G4A p.A2T CGCATGGCCTCCC . 214.0 92.0 212.0 1.0 . 514 SIGLEC8 27181 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 51961640 51961640 + Missense_Mutation SNP A A T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SIGLEC8 NM_014442 exon1 c.T2A p.M1K AGCAGCATGTCTG . 124.0 55.0 102.0 0.0 . 94 SLC16A9 220963 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 10 61413875 61413875 + Missense_Mutation SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SLC16A9 NM_194298 exon5 c.C909A p.N303K TACTTTGTTTTTA . 191.0 84.0 268.0 0.0 . 93 SLC4A1 6521 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 42335438 42335438 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SLC4A1 NM_000342 exon11 c.G1198T p.A400S TGAATGCATCTGT . 158.0 53.0 112.0 1.0 . 92 SLC6A2 6530 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 55736246 55736246 + Missense_Mutation SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SLC6A2 NM_001172501 exon15 c.G1842T p.W614C ACACTGGCTGGCC . 150.0 141.0 298.0 1.0 . 526 SLCO6A1 133482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 101816070 101816070 + Missense_Mutation SNP C C G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SLCO6A1 NM_173488 exon2 c.G427C p.E143Q ACTTCTCAATGGT . 368.0 169.0 486.0 0.0 . 96 SMTN 6525 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 31487025 31487025 + Missense_Mutation SNP C C G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SMTN NM_001207018 exon9 c.C1184G p.S395C TCACATCTGATTC . 261.0 109.0 247.0 0.0 . 154 SP110 3431 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 231079722 231079722 + Missense_Mutation SNP G G C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SP110 NM_001185015 exon4 c.C277G p.Q93E TAATTTGACTGAA . 232.0 102.0 233.0 0.0 . 155 SPATA13 221178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 24797411 24797411 + Missense_Mutation SNP A A T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SPATA13 NM_001166271 exon2 c.A344T p.K115M CCTTTAAGAAACT . 58.0 27.0 45.0 0.0 . 229 SPATA5L1 79029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 45713263 45713263 + Missense_Mutation SNP A A G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SPATA5L1 NM_024063 exon8 c.A2117G p.E706G TGCAAGAAAATGG . 84.0 41.0 99.0 0.0 . 94 SPINK5 11005 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 147503432 147503432 + Frame_Shift_Del DEL G G - novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SPINK5 NM_001127699 exon27 c.2575delG p.G859fs AGAAATGGAAAGC . 170.0 93.0 189.0 0.0 . 138 SPIRE1 56907 hgsc.bcm.edu;broad.mit.edu 37 18 12453128 12453128 + Frame_Shift_Del DEL A A - novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SPIRE1 NM_001128626 exon14 c.1786delT p.C596fs GGCAACAAAAGCA . 232.0 22.0 283.0 0.0 . 90 ST14 6768 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 130058534 130058534 + Silent SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ST14 NM_021978 exon3 c.C351T p.A117A CCTGGCCAGCAAG . 89.0 37.0 62.0 0.0 . 94 STAC 6769 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 36526541 36526541 + Missense_Mutation SNP A A T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . STAC NM_003149 exon4 c.A562T p.M188L GAAGTTATGCCCA . 310.0 134.0 352.0 2.0 . 94 STARD3 10948 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 37814042 37814042 + Silent SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . STARD3 NM_006804 exon4 c.C312T p.F104F CTTCTTCCGCTTC . 427.0 254.0 284.0 0.0 . 90 SYNE1 23345 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 152765606 152765606 + Silent SNP A A T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SYNE1 NM_033071 exon30 c.T3798A p.A1266A CTTCTCAGCTTGT . 253.0 120.0 310.0 0.0 . 607 SYNE1 23345 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 152765624 152765624 + Missense_Mutation SNP T T G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SYNE1 NM_033071 exon30 c.A3780C p.K1260N GACTTCTTTAGAG . 255.0 115.0 329.0 0.0 . 607 SYNRG 11276 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 35880688 35880688 + Missense_Mutation SNP C C G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . SYNRG NM_007247 exon20 c.G3730C p.E1244Q CAAGCTCCTGAGC . 208.0 71.0 158.0 0.0 . 92 TEX19 400629 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 80320463 80320463 + Missense_Mutation SNP C C G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . TEX19 NM_207459 exon2 c.C437G p.P146R GTCTTCCCTGGAG . 215.0 68.0 160.0 0.0 . 90 THADA 63892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 43813540 43813540 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . THADA NM_001083953 exon7 c.G533T p.R178I ACTTGCCTATTTT . 475.0 258.0 513.0 1.0 . 228 TIAL1 7073 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 121337034 121337034 + Frame_Shift_Del DEL T T - novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . TIAL1 NM_001033925 exon9 c.717delA p.R239fs TGTCTGTCTCATA . 153.0 65.0 155.0 0.0 . 91 TIMM44 10469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 7996055 7996055 + Missense_Mutation SNP G G C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . TIMM44 NM_006351 exon10 c.C1006G p.L336V TGTCAAGCTCTCC . 271.0 89.0 370.0 1.0 . 91 TLE6 79816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 2989558 2989558 + Missense_Mutation SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . TLE6 NM_001143986 exon13 c.G1019A p.C340Y GCACCTGCCTGCT . 49.0 15.0 67.0 0.0 . 91 TLN1 7094 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 35697837 35697837 + Missense_Mutation SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . TLN1 NM_006289 exon57 c.G7577A p.R2526Q TGCTGCCGGATCT . 550.0 187.0 426.0 0.0 . 609 TMEM132E 124842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 32959819 32959819 + Missense_Mutation SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . TMEM132E NM_207313 exon7 c.C1309T p.P437S AATGCTCCCCTGG . 262.0 74.0 190.0 0.0 . 68 TMEM244 253582 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 130166922 130166922 + Missense_Mutation SNP C C T rs143949103 TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 C6orf191,colon,carcinoma,0 . NM_001010876 exon2 c.G109A p.V37M ACATCACGCAGCC . 263.0 136.0 263.0 0.0 C|1.000;T|0.000 . TMEM8B 51754 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 35841793 35841793 + Splice_Site SNP T T A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . TMEM8B . . . . GCAAGGTCAGAAC . 210.0 85.0 203.0 0.0 . 91 TMPRSS12 283471 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 51237659 51237659 + Silent SNP A A G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . . NM_182559 exon2 c.A222G p.Q74Q GTTGCAAGGGTCT . 132.0 63.0 153.0 0.0 . . TRIM3 10612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6477958 6477958 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . TRIM3 NM_001248006 exon6 c.G998T p.R333L GCCTGGCGCAGGC . 76.0 29.0 56.0 0.0 . 714 TTC39A 22996 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 51761791 51761791 + Missense_Mutation SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . TTC39A NM_001144832 exon13 c.G1117T p.D373Y TGTGGTCCTCCTT . 60.0 19.0 41.0 0.0 . 23 TTC40 54777 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 134660574 134660574 + Silent SNP T T A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . . NM_001200049 exon43 c.A6129T p.S2043S CACCTCTGACGCC . 31.0 11.0 41.0 0.0 . . TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179463285 179463285 + Missense_Mutation SNP A A T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . TTN NM_001267550 exon292 c.T57059A p.V19020E CCAGTTACTTTGG . 380.0 156.0 408.0 0.0 . 636 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179470150 179470150 + Missense_Mutation SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . TTN NM_001267550 exon279 c.G53872A p.D17958N CATCATCTTGTAT . 181.0 88.0 245.0 0.0 . 636 TYR 7299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 88911272 88911272 + Missense_Mutation SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . TYR NM_000372 exon1 c.G151A p.G51S CTTTCAGGCAGAG . 98.0 32.0 112.0 0.0 . 92 VWA8 23078 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 42293771 42293771 + Silent SNP C C A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . . NM_015058 exon26 c.G3072T p.G1024G AGGTATCCCGTAT . 312.0 120.0 307.0 0.0 . . WBSCR17 64409 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 71130478 71130478 + Missense_Mutation SNP G G T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . WBSCR17 NM_022479 exon7 c.G1163T p.S388I ATAATAGCAACAT . 188.0 96.0 137.0 0.0 . 96 WDR41 55255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 76785371 76785371 + Missense_Mutation SNP T T A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . WDR41 NM_018268 exon2 c.A78T p.E26D TTGTTCTTCACCT . 350.0 164.0 378.0 0.0 . 90 XPO5 57510 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 43517661 43517661 + Missense_Mutation SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . XPO5 NM_020750 exon16 c.C1739T p.S580F GTGACAGATGAAA . 264.0 160.0 181.0 0.0 . 271 ZFP106 64397 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 42734378 42734378 + Missense_Mutation SNP G G A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ZFP106 NM_022473 exon7 c.C3587T p.S1196L TGAACTGATGAGT . 241.0 116.0 262.0 0.0 . 515 ZFP42 132625 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 188924570 188924570 + Silent SNP T T A novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ZFP42 NM_174900 exon4 c.T609A p.A203A TAGAGCTGCCCTG . 102.0 43.0 112.0 1.0 . 228 ZFP64 55734 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 50701265 50701265 + Missense_Mutation SNP A A C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ZFP64 NM_199427 exon9 c.T1769G p.V590G TCCCTGACGAAGG . 93.0 52.0 75.0 0.0 . 155 ZFYVE26 23503 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 68274384 68274384 + Missense_Mutation SNP C C T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ZFYVE26 NM_015346 exon5 c.G617A p.G206D TCAGGGCCCTGCA . 19.0 13.0 40.0 0.0 . 162 ZKSCAN1 7586 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 99621227 99621227 + Missense_Mutation SNP A A T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ZKSCAN1 NM_003439 exon2 c.A98T p.E33V AAGATGAGGAAGA . 96.0 36.0 117.0 0.0 . 93 ZKSCAN5 23660 broad.mit.edu;bcgsc.ca 37 7 99129075 99129075 + Missense_Mutation SNP A A G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ZKSCAN5 NM_145102 exon7 c.A1723G p.K575E GGGGAGAAACCAT . 111.0 5.0 118.0 0.0 . 91 ZNF285 26974 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 44890851 44890851 + Missense_Mutation SNP T T G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ZNF285 NM_152354 exon4 c.A1556C p.K519T AAGCCTTTACCAC . 422.0 204.0 501.0 0.0 . 94 ZNF326 284695 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 90486427 90486427 + Silent SNP A A G novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ZNF326 NM_182976 exon10 c.A1251G p.L417L TGCTTTACATAGT . 501.0 221.0 601.0 0.0 . 91 ZNF429 353088 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 21720692 21720692 + Nonsense_Mutation SNP A A T novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ZNF429 NM_001001415 exon4 c.A1837T p.K613X CATAAGAAAATTC . 102.0 45.0 90.0 0.0 . 516 ZNF486 90649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 20308237 20308237 + Missense_Mutation SNP T T C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ZNF486 NM_052852 exon4 c.T718C p.C240R TACAAATGTGAAG . 93.0 52.0 94.0 0.0 . 47 ZNF510 22869 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 99522164 99522164 + Silent SNP T T C novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ZNF510 NM_014930 exon6 c.A948G p.K316K AAAGGATTTCCCA . 215.0 110.0 297.0 0.0 . 90 ZNF571 51276 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 38056942 38056942 + Missense_Mutation SNP G G A rs115914028 byfrequency TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ZNF571 NM_016536 exon4 c.C388T p.R130W TTATCCGATGAAA . 366.0 169.0 393.0 0.0 G|0.998;A|0.002 90 ZNF835 90485 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 57176266 57176266 + Frame_Shift_Del DEL C C - novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . ZNF835 NM_001005850 exon2 c.301delG p.E101fs CTCTCTCCCGCTG . 82.0 38.0 82.0 0.0 . 72 ACACB 32 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 109637346 109637347 + Missense_Mutation DNP GC GC CT novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . . . . . p.A923L AGCTACGCTGAGA . 31.0 26.0 54.0 0.0 . . CLEC14A 161198 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 38724364 38724365 + Missense_Mutation DNP GG GG AT novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 GG GG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . . . . . p.T288N CCCACTGGTCACA . 35.0 9.0 35.0 0.0 . . C4orf45 152940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 159894436 159894437 + Missense_Mutation DNP GG GG TT novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 GG GG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . . . . . p.P31N ATTTTGGGTAAAT . 223.0 100.0 270.0 0.0 . . PRR16 51334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 120022379 120022380 + Missense_Mutation DNP GG GG TT novel TCGA-BC-A10Z-01A-11D-A12Z-10 TCGA-BC-A10Z-11A-11D-A12Z-10 GG GG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6bbfd9b-d3b5-4611-9011-ec67b57f3577 40a34014-00b9-4b89-9e56-3e2e6bc78a52 . . . . . p.R297I TCTTGAGGAAGTC . 25.0 15.0 20.0 0.0 . .