Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48559659	48559659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ABCA13	NM_152701	exon53	c.T13820C	p.V4607A	ATGATGTCCTCAA	.	134.0	16.0	179.0	1.0	.	521
ABRA	137735	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	107782232	107782232	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	ABRA,NS,carcinoma,0	ABRA	NM_139166	exon1	c.C187G	p.P63A	GTTTAGGAGCTTG	.	354.0	32.0	573.0	0.0	.	92
AHNAK2	113146	hgsc.bcm.edu;bcgsc.ca	37	14	105419292	105419292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	AHNAK2	NM_138420	exon7	c.G2496T	p.K832N	TTTGAACTTGCTG	.	228.0	13.0	323.0	0.0	.	47
ARHGAP10	79658	hgsc.bcm.edu;bcgsc.ca	37	4	148886196	148886196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ARHGAP10	NM_024605	exon17	c.G1472A	p.R491H	AATCTCGTGTTAA	.	466.0	23.0	561.0	0.0	.	229
C1orf65	164127	hgsc.bcm.edu;bcgsc.ca	37	1	223568584	223568584	+	Silent	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	C1orf65	NM_152610	exon1	c.C1767T	p.L589L	GAAGCTCCCTCAG	.	115.0	9.0	138.0	0.0	.	91
C6orf106	64771	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34574641	34574641	+	Silent	SNP	A	A	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	C6orf106	NM_024294	exon4	c.T552G	p.L184L	TCCTAAAAGTCCA	.	67.0	8.0	91.0	0.0	.	93
CTHRC1	115908	hgsc.bcm.edu;bcgsc.ca	37	8	104388131	104388131	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CTHRC1	NM_138455	exon2	c.T316A	p.Y106N	CCCAACTACAAGC	.	143.0	8.0	147.0	0.0	.	91
DCSTAMP	81501	bcgsc.ca;mdanderson.org	37	8	105360964	105360964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_001257317	exon2	c.G184A	p.A62T	GCGGCCGCTGCCT	.	323.0	18.0	457.0	0.0	.	.
GUSB	2990	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	65440043	65440043	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GUSB	NM_000181	exon6	c.C928T	p.Q310X	ACGTCTGTGCAGT	.	68.0	9.0	80.0	0.0	.	90
GUSB	2990	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	65439983	65439983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GUSB	NM_000181	exon6	c.G988T	p.A330S	TGACAGCCACAGT	.	111.0	14.0	144.0	1.0	.	90
HIF1A	3091	hgsc.bcm.edu;bcgsc.ca	37	14	62207716	62207716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	HIF1A	NM_001243084	exon12	c.A1975T	p.I659F	GAAGACATTAAAA	.	158.0	9.0	235.0	0.0	.	1149
HMCN1	83872	bcgsc.ca;mdanderson.org	37	1	186007150	186007150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	HMCN1	NM_031935	exon37	c.C5834A	p.A1945D	AGGCAGCTGGAAA	.	215.0	19.0	234.0	1.0	.	113
HMGB3	3149	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	X	150155724	150155724	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	HMGB3	NM_005342	exon4	c.A414T	p.E138D	CAGTGAAAAGCAG	.	158.0	11.0	219.0	0.0	.	226
IFT57	55081	hgsc.bcm.edu;bcgsc.ca	37	3	107937444	107937444	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	IFT57	NM_018010	exon3	c.A432G	p.V144V	ATAGCATACATGT	.	307.0	13.0	393.0	0.0	.	227
NCL	4691	hgsc.bcm.edu;mdanderson.org	37	2	232325423	232325423	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NCL	NM_005381	exon4	c.T768A	p.D256E	ATCATCATCATCT	.	385.0	35.0	474.0	0.0	.	230
OBSCN	84033	hgsc.bcm.edu;bcgsc.ca	37	1	228495849	228495849	+	Silent	SNP	G	G	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OBSCN	NM_001271223	exon58	c.G15375T	p.A5125A	TGATGCGGAGGTG	.	129.0	9.0	168.0	0.0	.	403
OLFML2A	169611	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	9	127561615	127561615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OLFML2A	NM_182487	exon4	c.C514A	p.R172S	AGCGTGCGCCACC	.	125.0	10.0	159.0	0.0	.	68
ORM1	5004	hgsc.bcm.edu;bcgsc.ca	37	9	117086341	117086341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ORM1	NM_000607	exon3	c.C301T	p.R101W	GTCCAGCGGGAAA	.	240.0	10.0	286.0	0.0	.	90
PIGO	84720	ucsc.edu;bcgsc.ca	37	9	35093208	35093208	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PIGO	NM_152850	exon7	c.940-2A>G	.	GGCTCCTAAAGGA	.	42.0	4.0	47.0	0.0	.	290
PRPF31	26121	ucsc.edu;bcgsc.ca	37	19	54631459	54631459	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PRPF31	NM_015629	exon10	c.A957G	p.E319E	CTACGAACTGAAG	.	46.0	4.0	76.0	1.0	.	91
PTPRZ1	5803	bcgsc.ca;mdanderson.org	37	7	121684477	121684477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PTPRZ1	NM_002851	exon23	c.A5939G	p.E1980G	GCCAGGAGCAATA	.	404.0	22.0	446.0	1.0	.	699
SGTB	54557	hgsc.bcm.edu;bcgsc.ca	37	5	64976616	64976616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SGTB	NM_019072	exon7	c.C485T	p.A162V	GTGAGGGCCAGCC	.	136.0	9.0	182.0	0.0	.	90
SHKBP1	92799	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41089577	41089577	+	Silent	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SHKBP1	NM_138392	exon12	c.G1119A	p.A373A	CCCAGCGGAGGAT	.	105.0	11.0	174.0	0.0	.	92
SON	6651	hgsc.bcm.edu;bcgsc.ca	37	21	34925206	34925206	+	Silent	SNP	T	T	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SON	NM_032195	exon3	c.T3669A	p.P1223P	GGAGCCTTCAGCA	.	237.0	14.0	282.0	0.0	.	97
SPTA1	6708	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	158651408	158651408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SPTA1	NM_003126	exon4	c.C440T	p.T147I	TCCAGGGTCAGCT	.	224.0	16.0	281.0	0.0	.	142
TNRC6C	57690	ucsc.edu;bcgsc.ca	37	17	76060811	76060811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TNRC6C	NM_018996	exon5	c.G2404A	p.G802S	TCATCAGGCTGGG	.	39.0	4.0	71.0	0.0	.	24
UHRF1BP1	54887	bcgsc.ca;mdanderson.org	37	6	34802105	34802105	+	Silent	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	UHRF1BP1	NM_017754	exon5	c.C450A	p.L150L	GCAGCTCCAGGGC	.	223.0	20.0	285.0	1.0	.	93
URI1	8725	hgsc.bcm.edu;bcgsc.ca	37	19	30476164	30476164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_003796	exon3	c.G187A	p.E63K	CTTCGAGAAAGAC	.	263.0	15.0	359.0	0.0	.	.
USP40	55230	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	2	234394446	234394446	+	Silent	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	USP40	NM_018218	exon28	c.C3408T	p.P1136P	CTTTTCGGGAAAG	.	335.0	21.0	438.0	0.0	.	455
ZNF638	27332	hgsc.bcm.edu;bcgsc.ca	37	2	71658550	71658550	+	Missense_Mutation	SNP	T	T	G	rs201989581	alternate_allele	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF638	NM_014497	exon26	c.T5744G	p.V1915G	CTGATGTCCCTGA	.	292.0	12.0	404.0	0.0	T|0.999;C|0.001	94