Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCC8	6833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17418492	17418492	+	Missense_Mutation	SNP	C	C	A	rs138642224	byfrequency;alternate_allele	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ABCC8	NM_000352	exon33	c.G4090T	p.V1364F	CATTGACGTGCTT	.	195.0	78.0	135.0	0.0	C|0.999;T|0.001	91
ADAMTS15	170689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130343256	130343256	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ADAMTS15	NM_139055	exon8	c.T2393G	p.F798C	ACTCCTTCTATCT	.	150.0	74.0	122.0	0.0	.	291
ADAMTS1	9510	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	28211905	28211905	+	Splice_Site	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ADAMTS1	NM_006988	exon8	c.2028+1G>T	.	GAACTACCTTGGG	.	27.0	12.0	27.0	0.0	.	272
ADPRM	56985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	10614393	10614393	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	NM_020233	exon4	c.961delT	p.L321X	ATGATGTTGAAAG	.	64.0	39.0	68.0	0.0	.	.
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148037577	148037577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	AFF2	NM_002025	exon11	c.A2002G	p.R668G	CCACCAAGAGGCC	.	50.0	42.0	30.0	0.0	.	135
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47712149	47712149	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	AGBL2	NM_024783	exon10	c.G1110A	p.G370G	CTGCTGCCCATCA	.	216.0	97.0	157.0	0.0	.	92
APBB1	322	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	6422250	6422250	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	APBB1	NM_001164	exon11	c.C1641G	p.Y547X	CCCCAGGTAATAG	.	197.0	75.0	118.0	1.0	.	136
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14650961	14650961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ATF7IP	NM_018179	exon15	c.G3767T	p.C1256F	CTTTCTGTGATCC	.	56.0	38.0	85.0	0.0	.	252
BCAN	63827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156618360	156618360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	BCAN	NM_198427	exon6	c.G770C	p.G257A	ACCCAGGAGAACT	.	85.0	32.0	75.0	0.0	.	516
C11orf35	256329	hgsc.bcm.edu;broad.mit.edu	37	11	556881	556881	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C11orf35	NM_173573	exon8	c.930delC	p.S310fs	TTGCTCGGAGGAA	.	38.0	13.0	25.0	0.0	.	69
C15orf55	256646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34640560	34640560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C15orf55	NM_175741	exon2	c.C407T	p.A136V	TGACAGCATCTAA	.	112.0	39.0	117.0	0.0	.	206
C20orf26	26074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20177325	20177325	+	Missense_Mutation	SNP	C	C	T	rs142308308		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C20orf26	NM_015585	exon16	c.C1702T	p.R568W	ATTTTCCGGCACT	.	200.0	113.0	108.0	0.0	C|1.000;T|0.000	94
C21orf59	56683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33976524	33976524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C21orf59	NM_021254	exon4	c.G445T	p.A149S	TCACCGCGCCTCG	.	172.0	78.0	108.0	0.0	.	90
C9orf85	138241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74586499	74586499	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C9orf85	NM_182505	exon3	c.C288T	p.C96C	AGTTTGCGCAAAA	.	65.0	33.0	48.0	0.0	.	90
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2558277	2558277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CACNA1C	NM_001129831	exon4	c.G613T	p.V205L	GTGGTTGTGGGGT	.	97.0	60.0	118.0	0.0	.	34
CD244	51744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160801203	160801203	+	Missense_Mutation	SNP	T	T	G	rs146201991	alternate_allele	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CD244	NM_001166663	exon9	c.A1047C	p.Q349H	TTTAGGTTGACTC	.	115.0	17.0	74.0	0.0	T|1.000;C|0.000	91
CDKN1A	1026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36652024	36652024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CDKN1A	NM_001220778	exon2	c.G146T	p.W49L	AGCGATGGAACTT	.	78.0	44.0	32.0	0.0	.	872
CISD3	284106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	36889706	36889706	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	NM_001136498	exon4	c.T382G	p.X128G	CCACTCTGAGGGG	.	53.0	29.0	35.0	0.0	.	.
CLYBL	171425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	100515304	100515304	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CLYBL	NM_206808	exon4	c.A498C	p.L166F	GAATTTAATCCCT	.	65.0	20.0	38.0	0.0	.	90
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207739189	207739189	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CR1	NM_000651	exon24	c.A3873G	p.Q1291Q	ATTTCAATTAAAA	.	525.0	218.0	379.0	0.0	.	93
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113668402	113668402	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CSMD3	NM_198123	exon18	c.T2985C	p.G995G	CTTGAAACCATTA	.	115.0	37.0	72.0	0.0	.	1132
CSNK2A1	1457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	489179	489184	+	In_Frame_Del	DEL	GGCACG	GGCACG	-	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	GGCACG	GGCACG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CSNK2A1	NM_001895	exon2	c.12_17del	p.4_6del	CTGCTTGGCACGG	.	204.0	37.0	143.0	0.0	.	791
CYSLTR2	57105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	49281716	49281716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CYSLTR2	NM_020377	exon1	c.A763G	p.I255V	TTGATCATCTTCT	.	49.0	15.0	25.0	0.0	.	278
DCTN4	51164	ucsc.edu;bcgsc.ca	37	5	150111050	150111050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	DCTN4	NM_001135643	exon7	c.A560G	p.D187G	TATTTGTCCTAAA	.	29.0	4.0	26.0	0.0	.	90
DNAJB4	11080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	78479088	78479088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	DNAJB4	NM_007034	exon2	c.G565A	p.D189N	AACGCTGATGGAA	.	108.0	46.0	59.0	0.0	.	226
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45440496	45440496	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	DUOX1	NM_017434	exon22	c.G2669C	p.C890S	ACAACTGCCTGTC	.	147.0	68.0	126.0	0.0	.	142
ENG	2022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130587248	130587248	+	Silent	SNP	A	A	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ENG	NM_001114753	exon7	c.T822A	p.T274T	TTCTCCAGTGGTC	.	40.0	17.0	34.0	0.0	.	90
FAIM2	23017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50291319	50291319	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	FAIM2	NM_012306	exon4	c.G363A	p.V121V	GAGAGCCACGACA	.	178.0	69.0	136.0	0.0	.	230
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	144808725	144808725	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	FAM83H	NM_198488	exon5	c.T2906G	p.L969R	TGCCTAAGACGCA	.	59.0	24.0	34.0	0.0	.	92
FRA10AC1	118924	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	95441348	95441348	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	FRA10AC1	NM_145246	exon11	c.G676T	p.E226X	TGATTTCTTTTCT	.	37.0	6.0	35.0	0.0	.	90
G3BP2	9908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	76579227	76579227	+	Silent	SNP	A	A	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	G3BP2	NM_012297	exon8	c.T765G	p.P255P	ACTAGGAGGCAGG	.	43.0	29.0	57.0	0.0	.	153
GPI	2821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	34887542	34887542	+	Silent	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GPI	NM_001184722	exon14	c.C1282A	p.R428R	CCCATACGGAAGG	.	109.0	32.0	74.0	0.0	.	228
GPR142	350383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72363763	72363763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GPR142	NM_181790	exon1	c.C119T	p.S40F	TGGTGTCCCATGC	.	108.0	34.0	90.0	0.0	.	93
GPR75	10936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54081699	54081699	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GPR75	NM_006794	exon2	c.G195A	p.L65L	GAAGGACAAGAAG	.	230.0	96.0	174.0	0.0	.	92
HIF3A	64344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46812017	46812017	+	Silent	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	HIF3A	NM_152795	exon5	c.G546A	p.K182K	CCTCAAGGCGGCC	.	67.0	22.0	43.0	0.0	.	228
ING1	3621	hgsc.bcm.edu;bcgsc.ca	37	13	111371870	111371870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ING1	NM_005537	exon2	c.A860G	p.K287R	CTGACAAGCCCAA	.	55.0	4.0	43.0	0.0	.	515
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81234212	81234212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	KIAA1199	NM_018689	exon25	c.G3430T	p.A1144S	CTGAAAGCTCAGA	.	78.0	30.0	54.0	0.0	.	93
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28971063	28971063	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	KIF13B	NM_015254	exon32	c.C3847G	p.Q1283E	GACTCTGTGCAAA	.	60.0	19.0	30.0	0.0	.	22
KLHL32	114792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97562045	97562045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	KLHL32,NS,carcinoma,+1	KLHL32	NM_052904	exon7	c.C1014A	p.H338Q	GAGCCACCATTGT	.	81.0	25.0	43.0	0.0	.	94
KRTAP13-4	284827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31802993	31802993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	KRTAP13-4	NM_181600	exon1	c.C400A	p.P134T	TGCTACCCAAACT	.	193.0	92.0	127.0	0.0	.	90
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129571345	129571345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	LAMA2	NM_000426	exon13	c.T1871C	p.M624T	AGCTTATGATTAT	.	97.0	60.0	53.0	0.0	.	162
LRRC19	64922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	26995539	26995539	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	LRRC19	NM_022901	exon5	c.G1093T	p.E365X	ATAATTCATGGAT	.	92.0	39.0	56.0	0.0	.	514
LRRN2	10446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204588961	204588961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	LRRN2	NM_006338	exon3	c.G160T	p.D54Y	TGCAGTCCACAGT	.	83.0	36.0	80.0	0.0	.	514
MAD2L1	4085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	120982128	120982128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MAD2L1	NM_002358	exon4	c.C346A	p.P116T	CTCTGGGTGCACT	.	156.0	62.0	113.0	0.0	.	227
MAST1	22983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12978549	12978549	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MAST1	NM_014975	exon20	c.G2324C	p.R775P	GCAAGCGATTCTC	.	55.0	13.0	41.0	0.0	.	523
MEX3C	51320	hgsc.bcm.edu;mdanderson.org	37	18	48723394	48723394	+	Silent	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MEX3C	NM_016626	exon1	c.G297T	p.G99G	CGGGGCCCCGGGC	.	14.0	7.0	12.0	0.0	.	659
MON1B	22879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77228317	77228317	+	Silent	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MON1B	NM_014940	exon4	c.G561T	p.R187R	GCTGCGGGGGGAG	.	90.0	37.0	46.0	0.0	.	90
MUSK	4593	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	113550088	113550088	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MUSK	NM_005592	exon13	c.1897delT	p.F633fs	GCAGAATTTGACA	.	124.0	52.0	91.0	0.0	.	1379
NCKAP1	10787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	183847561	183847561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NCKAP1	NM_205842	exon13	c.A1214G	p.D405G	ATAAAGTCGTCTG	.	208.0	93.0	109.0	0.0	.	92
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50190101	50190101	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NCKAP5L	NM_001037806	exon8	c.G1542C	p.E514D	CGCCCCCTCTGGG	.	126.0	52.0	85.0	0.0	.	68
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124915190	124915190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NCOR2	NM_006312	exon11	c.G1026T	p.K342N	GCGCTGCTTGCGG	.	85.0	43.0	63.0	0.0	.	229
NOS2	4843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26110007	26110007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NOS2	NM_000625	exon6	c.C593T	p.P198L	CAGCGTGGGGCAT	.	318.0	116.0	233.0	0.0	.	156
NPEPPS	9520	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45608887	45608887	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NPEPPS	NM_006310	exon1	c.T221A	p.F74Y	TGGACTTCACCTT	.	242.0	71.0	188.0	0.0	.	90
ORM1	5004	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	117086007	117086007	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ORM1	NM_000607	exon2	c.A179T	p.Q60L	CGGTTCAGGAGAT	.	353.0	155.0	222.0	0.0	.	90
PCDHGA11	56105	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140803121	140803121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	NM_032091	exon1	c.A2327G	p.Y776C	CCAACTATGGGGA	.	153.0	54.0	129.0	1.0	.	.
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82784756	82784756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PCLO	NM_014510	exon2	c.C1201A	p.P401T	GAGCTGGAGTCTT	.	209.0	73.0	145.0	0.0	.	29
PLK1	5347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23700573	23700573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PLK1	NM_005030	exon8	c.G1285C	p.D429H	CTCTGTGATAACA	.	226.0	29.0	135.0	0.0	.	766
PRKCH	5583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	61909960	61909960	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PRKCH	NM_006255	exon3	c.C559G	p.H187D	TGCTCTCACTGCA	.	133.0	71.0	85.0	0.0	.	1063
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89720811	89720812	+	Frame_Shift_Ins	INS	-	-	A	rs121913291		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PTEN	NM_000314	exon8	c.962_963insA	p.T321fs	CTTTAACAAAAAA	.	170.0	110.0	171.0	0.0	.	17735
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141684416	141684416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PTK2	NM_005607	exon29	c.G2756A	p.S919N	TTGTAGCTGTCAG	.	76.0	29.0	75.0	0.0	.	1517
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47453376	47453376	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PTPN23	NM_015466	exon21	c.A3992T	p.E1331V	ATGTGGAGCGCGT	.	226.0	93.0	169.0	0.0	.	227
RAC2	5880	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37627330	37627330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RAC2	NM_002872	exon5	c.A389G	p.K130R	TTCTCCTTCAGTT	.	330.0	127.0	241.0	1.0	.	723
RHBDF2	79651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	74473344	74473344	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RHBDF2	NM_024599	exon8	c.T925A	p.S309T	GGGGGGACTCAAA	.	70.0	22.0	49.0	0.0	.	90
ROCK1	6093	hgsc.bcm.edu;broad.mit.edu	37	18	18629104	18629105	+	Frame_Shift_Ins	INS	-	-	A	rs35810558		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ROCK1	NM_005406	exon4	c.363_364insT	p.F121fs	TTCCCAGAAAAAA	.	127.0	13.0	83.0	0.0	.	1026
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34109151	34109151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RYR3	NM_001036	exon75	c.G10591T	p.D3531Y	GTACAGGATTTGG	.	128.0	42.0	95.0	0.0	.	520
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62020305	62020305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SCN4A	NM_000334	exon23	c.T4169C	p.M1390T	AAGATCATGTTGA	.	394.0	152.0	359.0	0.0	.	93
SDR42E1	93517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	82033315	82033315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SDR42E1	NM_145168	exon3	c.A583G	p.R195G	GGTGTCTTTGTTC	.	128.0	6.0	105.0	0.0	.	90
SLC1A3	6507	broad.mit.edu;bcgsc.ca	37	5	36680561	36680561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLC1A3	NM_004172	exon8	c.A1159G	p.T387A	CGCGTCACCAGAT	.	86.0	5.0	52.0	0.0	.	90
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211749145	211749145	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLC30A1	NM_021194	exon2	c.A1109T	p.H370L	AATTCATGAACTT	.	60.0	23.0	39.0	0.0	.	93
SLC38A9	153129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54952566	54952566	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLC38A9	NM_173514	exon9	c.T734G	p.L245R	GTACTCAGTATAG	.	107.0	38.0	86.0	0.0	.	68
SLCO3A1	28232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	92459662	92459662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLCO3A1	NM_013272	exon2	c.G620A	p.R207Q	ACGTGCGGAGGAA	.	122.0	50.0	109.0	0.0	.	91
SLTM	79811	broad.mit.edu;bcgsc.ca	37	15	59179713	59179713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLTM	NM_024755	exon18	c.A2402G	p.E801G	TTCCCCTCACTTT	.	109.0	7.0	85.0	0.0	.	91
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39213099	39213099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SOS1	NM_005633	exon23	c.C3868T	p.P1290S	CAGGCGGCCCAGC	.	536.0	205.0	426.0	0.0	.	851
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35793440	35793440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SPEF2	NM_024867	exon32	c.G4734T	p.M1578I	GTATATGCAGGTT	.	202.0	71.0	161.0	0.0	.	26
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	220354314	220354314	+	Silent	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SPEG	NM_005876	exon36	c.G8574A	p.A2858A	GCCAGCGGAGCCC	.	109.0	34.0	88.0	0.0	.	383
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70604840	70604840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TAF1	NM_004606	exon14	c.A2227G	p.T743A	GGGGAAACTGTTT	.	104.0	82.0	74.0	0.0	.	900
TAS2R41	259287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143175217	143175217	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TAS2R41	NM_176883	exon1	c.C252T	p.F84F	ACAGTTCTTCCAT	.	91.0	11.0	81.0	0.0	.	92
TF	7018	hgsc.bcm.edu;bcgsc.ca	37	3	133476713	133476713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TF	NM_001063	exon8	c.T971C	p.V324A	TAAAAGTCCCCCC	.	151.0	52.0	100.0	0.0	.	92
TF	7018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	133476711	133476712	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TF	NM_001063	exon8	c.969_970insG	p.K323fs	TTTAAAAGTCCCC	.	153.0	54.0	99.0	0.0	.	92
TRIML1	339976	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	189065204	189065204	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TRIML1	NM_178556	exon5	c.T773A	p.L258X	CACTCTTGCTTCA	.	79.0	31.0	85.0	0.0	.	156
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216420124	216420124	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	USH2A	NM_007123	exon13	c.A2612T	p.K871I	CCTAATTTGCAAG	.	236.0	86.0	157.0	0.0	.	115
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49153563	49153563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	USP19	NM_001199160	exon10	c.G1388A	p.C463Y	GTGAAACAGAAGG	.	177.0	80.0	100.0	0.0	.	663
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22120822	22120822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	VWA3A	NM_173615	exon7	c.G503A	p.G168E	TCAAAGGGGCCAG	.	55.0	18.0	33.0	0.0	.	1
WAPAL	23063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88259978	88259978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	WAPAL	NM_015045	exon3	c.G1022A	p.G341D	CTTACACCCCCTT	.	69.0	46.0	67.0	0.0	.	91
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85711036	85711036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	WDFY3	NM_014991	exon22	c.C3512T	p.S1171L	TAAAATGAGGACT	.	113.0	82.0	139.0	1.0	.	93
WDR59	79726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	74943789	74943789	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	WDR59	NM_030581	exon15	c.A1416G	p.K472K	CTTCACTTTCTGC	.	203.0	95.0	123.0	0.0	.	92
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	71592562	71592563	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ZNF638	NM_014497	exon6	c.1721_1722insA	p.R574fs	TAGATAGAAAAAA	.	65.0	23.0	31.0	0.0	.	94