Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACAT2	39	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	160184055	160184055	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ACAT2	NM_005891	exon2	c.G160T	p.E54X	GTGTCTGAGGTCA	.	224.0	55.0	214.0	0.0	.	91
ACSM4	341392	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	7470658	7470658	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001080454	exon5	c.G801C	p.W267C	CATATGGAATATG	.	303.0	22.0	246.0	2.0	.	.
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45688359	45688359	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ADCY1	NM_021116	exon5	c.T1111A	p.C371S	CACTGCTGTGTGG	.	184.0	75.0	266.0	0.0	.	95
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45717579	45717579	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ADCY1	NM_021116	exon9	c.T1717A	p.L573I	CGCCTCTTAGAAG	.	180.0	61.0	222.0	0.0	.	95
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62292811	62292811	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	AHNAK	NM_001620	exon5	c.A9078T	p.K3026N	GGGCATTTTCACT	.	162.0	67.0	165.0	0.0	.	109
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139892497	139892497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ANKHD1	NM_017747	exon23	c.A4189G	p.I1397V	GCAACAATTACAG	.	201.0	125.0	179.0	0.0	.	185
ANKRD18B	441459	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	9	33548138	33548138	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001244752	exon9	c.T1163G	p.I388R	AAATGATAACAAA	.	113.0	92.0	154.0	0.0	.	.
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27324233	27324233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ANKRD26	NM_014915	exon24	c.A3146G	p.N1049S	TCAAAATTCATTT	.	155.0	69.0	126.0	0.0	.	138
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101381353	101381353	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ANO4	NM_178826	exon7	c.A534T	p.L178F	ATGGTTACCTAAG	.	86.0	47.0	87.0	0.0	.	96
APOB	338	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21228347	21228347	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	APOB	NM_000384	exon26	c.C11393G	p.T3798R	TATTTTGTTAACA	.	146.0	30.0	138.0	1.0	.	175
ARHGEF25	115557	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	58008160	58008160	+	Silent	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ARHGEF25	NM_001111270	exon8	c.C820T	p.L274L	GATTGGCTGGCTC	.	152.0	12.0	149.0	0.0	.	653
ARHGEF33	100271715	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	39164550	39164550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ARHGEF33	NM_001145451	exon7	c.C640T	p.H214Y	AAGGGCCATCTCC	.	154.0	14.0	145.0	0.0	.	46
ARIH2	10425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49006060	49006060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ARIH2	NM_006321	exon7	c.G632C	p.R211T	AATACAGGCGCTA	.	145.0	19.0	177.0	0.0	.	91
ARMC3	219681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	23244747	23244747	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ARMC3	NM_173081	exon4	c.A178G	p.K60E	GAAAATAAAACAA	.	64.0	19.0	43.0	0.0	.	90
ARMCX3	51566	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	100880696	100880696	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ARMCX3	NM_016607	exon5	c.727delA	p.N243fs	CTTGCTAATTCCA	.	177.0	89.0	161.0	0.0	.	131
ATP7A	538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	77244075	77244075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ATP7A	NM_000052	exon3	c.T458C	p.L153P	GGACACTGGAGAA	.	237.0	89.0	199.0	0.0	.	130
BCAS1	8537	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	52645509	52645509	+	Missense_Mutation	SNP	C	C	T	rs146806249		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	BCAS1	NM_003657	exon4	c.G145A	p.D49N	CCAAGTCGACTGT	.	36.0	18.0	33.0	0.0	C|1.000;T|0.000	652
BCL3	602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45260278	45260278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	BCL3	NM_005178	exon4	c.C524T	p.P175L	AGACACCGCTCCA	.	537.0	101.0	210.0	0.0	.	848
BCOR	54880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	39922123	39922123	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	BCOR	NM_001123385	exon9	c.A4049T	p.Y1350F	TCGGTGTATTTCT	.	341.0	118.0	373.0	1.0	.	229
BRSK1	84446	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55795935	55795935	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	BRSK1	NM_032430	exon1	c.A125T	p.K42I	TGGGCAAAGGACA	.	554.0	97.0	320.0	1.0	.	759
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	219225314	219225314	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	C2orf62	NM_198559	exon5	c.G394T	p.E132X	CCCATGGAACGGA	.	53.0	34.0	39.0	0.0	.	68
CA8	767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61193683	61193683	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CA8	NM_004056	exon1	c.A24T	p.E8D	GGTATCTTCGATG	.	44.0	19.0	44.0	0.0	.	90
CACTIN	58509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3612206	3612206	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_021231	exon10	c.C1992T	p.D664D	GTCAAAGTCGTAG	.	617.0	456.0	274.0	0.0	.	.
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2968238	2968238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CARD11	NM_032415	exon13	c.A1748G	p.H583R	CTGCGATGGGGCG	.	27.0	9.0	57.0	0.0	.	870
CATSPERD	257062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5772804	5772804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_152784	exon20	c.G1769A	p.R590Q	GGTGGCGAAAAGA	.	209.0	65.0	156.0	0.0	.	.
CBFA2T2	9139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	32207387	32207387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CBFA2T2	NM_005093	exon5	c.G512T	p.R171L	CCCTTCGTCCTTT	.	137.0	62.0	123.0	0.0	.	92
CCDC134	79879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42209427	42209427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CCDC134	NM_024821	exon5	c.C470T	p.P157L	AGGGGCCCCACTC	.	166.0	128.0	187.0	1.0	.	92
CCDC47	57003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61829358	61829358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CCDC47	NM_020198	exon12	c.G1313T	p.R438I	TCTGCTCTTTTTT	.	126.0	73.0	156.0	0.0	.	90
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157804417	157804417	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CD5L	NM_005894	exon4	c.C498T	p.G166G	GCTCCAGCCTGTC	.	128.0	57.0	92.0	0.0	.	91
CEACAM18	729767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51981868	51981868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CEACAM18	NM_001080405	exon2	c.C155A	p.P52H	AGGGACCCCTCCT	.	203.0	32.0	82.0	0.0	.	23
CEP104	9731	broad.mit.edu;bcgsc.ca	37	1	3755593	3755593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CEP104	NM_014704	exon8	c.A826G	p.M276V	GCTCCATCTGCTG	.	145.0	6.0	193.0	0.0	.	92
CNGA2	1260	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	150912895	150912895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CNGA2	NM_005140	exon7	c.G1920T	p.M640I	CAAGATGAAACAG	.	111.0	8.0	124.0	0.0	.	193
COL9A3	1299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61467861	61467861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	COL9A3	NM_001853	exon29	c.A1580T	p.E527V	TCAGGGAGCTGTG	.	81.0	26.0	99.0	0.0	.	514
COLGALT2	23127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183933105	183933105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_015101	exon6	c.C882G	p.I294M	CAGGGGGATGGGC	.	286.0	129.0	244.0	0.0	.	.
CP	1356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148927024	148927024	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CP	NM_000096	exon4	c.A755T	p.D252V	TGGAAGTCTTCGT	.	240.0	119.0	261.0	0.0	.	515
CRAT	1384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131859581	131859581	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CRAT	NM_000755	exon12	c.A1475T	p.K492M	TCCACCTTCTGGT	.	67.0	27.0	45.0	0.0	.	90
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	36691797	36691797	+	Silent	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CRIM1	NM_016441	exon5	c.T990C	p.N330N	TGTTAATGGTACG	.	268.0	83.0	294.0	0.0	.	118
CXCR4	7852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	136872834	136872834	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CXCR4	NM_001008540	exon1	c.A676T	p.I226F	AGATGATAATGCA	.	126.0	85.0	133.0	0.0	.	1082
CYB561	1534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61513455	61513455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CYB561	NM_001915	exon3	c.C261A	p.H87Q	CAGCCCGTGCAGG	.	99.0	58.0	116.0	0.0	.	91
DCHS2	54798	broad.mit.edu;bcgsc.ca	37	4	155156791	155156791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DCHS2	NM_017639	exon25	c.T7648C	p.F2550L	TCAGAAACACTAA	.	155.0	8.0	108.0	0.0	.	94
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155243495	155243495	+	Silent	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DCHS2	NM_017639	exon13	c.T2799A	p.V933V	ATTAACAACTGCC	.	110.0	48.0	85.0	0.0	.	94
DENND5A	23258	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	9192221	9192221	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DENND5A	NM_001243254	exon9	c.C2010T	p.F670F	CTTAGGGAAGAAG	.	242.0	16.0	197.0	1.0	.	91
DLG1	1739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197023346	197023346	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DLG1	NM_001204386	exon3	c.A22T	p.T8S	TCTGGGTATCTGA	.	116.0	49.0	81.0	0.0	.	118
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	118469442	118469442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DMXL1	NM_005509	exon12	c.T1823A	p.L608Q	GTTCTCTGAATCA	.	194.0	52.0	176.0	0.0	.	92
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	51828802	51828802	+	Silent	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DMXL2	NM_001174117	exon12	c.A1875T	p.A625A	AGTGACTGCCCAC	.	94.0	69.0	165.0	1.0	.	99
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21061288	21061288	+	Silent	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DNAH3	NM_017539	exon30	c.A4290T	p.P1430P	CCCAGCTGGACCC	.	62.0	25.0	65.0	0.0	.	167
DOCK1	1793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	128798514	128798514	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DOCK1	NM_001380	exon10	c.A928T	p.R310W	GAGCTGAGGGACA	.	125.0	46.0	132.0	0.0	.	698
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	2214500	2214500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DOT1L	NM_032482	exon19	c.G1828T	p.D610Y	CAGCTGGACTGGG	.	384.0	18.0	172.0	0.0	.	132
DRG1	4733	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	31799026	31799026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DRG1	NM_004147	exon3	c.G178T	p.A60S	GATGTGGCCAAGA	.	277.0	13.0	417.0	0.0	.	90
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117301488	117301488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DSCAML1	NM_020693	exon32	c.C5816T	p.A1939V	CGGTCCGCATCCT	.	152.0	9.0	140.0	0.0	.	159
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	45427708	45427708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DUOX1	NM_017434	exon7	c.A532G	p.I178V	AGCGCCATCTATG	.	44.0	22.0	126.0	0.0	.	142
EFNA4	1945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155039354	155039354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	EFNA4	NM_182690	exon2	c.G262T	p.A88S	TGCCAGGCAGAGG	.	236.0	82.0	172.0	0.0	.	115
EGFL6	25975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	13645318	13645318	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	EGFL6	NM_001167890	exon11	c.G1477C	p.E493Q	GCATGGGAGAAGA	.	126.0	58.0	117.0	0.0	.	193
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38350697	38350697	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	EGFLAM	NM_001205301	exon4	c.G386C	p.R129P	CTCCTCGGCATGT	.	75.0	23.0	74.0	0.0	.	187
EPHA4	2043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	222365784	222365784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	EPHA4	NM_004438	exon4	c.G932A	p.R311Q	AAGCCTCGGTCAC	.	56.0	12.0	62.0	0.0	.	1441
EXO1	9156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	242024779	242024779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	EXO1	NM_130398	exon10	c.A1016G	p.D339G	AGATCGATGACTA	.	95.0	43.0	61.0	0.0	.	661
FABP9	646480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82371529	82371529	+	Silent	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FABP9	NM_001080526	exon2	c.G117T	p.P39P	TACTGTCGGTTTC	.	249.0	59.0	150.0	0.0	.	22
FAM217B	63939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58519115	58519115	+	Silent	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_022106	exon4	c.T117A	p.A39A	CACAGCTGTCACC	.	189.0	62.0	136.0	0.0	.	.
FAM71E2	284418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55870535	55870535	+	Silent	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001145402	exon9	c.G1701A	p.L567L	TGTTGGCAACACG	.	161.0	25.0	61.0	0.0	.	.
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127714494	127714494	+	Missense_Mutation	SNP	G	G	T	rs199720456	alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FBN2	NM_001999	exon12	c.C1693A	p.Q565K	TCCTCTGGAATCC	.	89.0	31.0	102.0	0.0	G|0.999;A|0.001	146
FBXO36	130888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230787284	230787284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FBXO36	NM_174899	exon1	c.C55G	p.P19A	CCGCCGCCTAGCA	.	205.0	41.0	248.0	0.0	.	227
FBXW7	55294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	153273838	153273838	+	Silent	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FBXW7	NM_018315	exon1	c.T45A	p.L15L	ACAGTAAAGGCAA	.	57.0	17.0	55.0	0.0	.	6296
FHOD3	80206	ucsc.edu;bcgsc.ca	37	18	34182638	34182638	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FHOD3	NM_025135	exon8	c.G720A	p.G240G	CATAGGGGTCAAA	.	220.0	93.0	183.0	2.0	.	139
FMN1	342184	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33359290	33359290	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FMN1	NM_001103184	exon1	c.T796A	p.S266T	CTCCAGAGACTTC	.	88.0	62.0	119.0	1.0	.	23
GPX6	257202	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28478622	28478622	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	GPX6	.	.	.	.	CTCGCCGTTGAGG	.	127.0	59.0	130.0	0.0	.	95
GRIP2	80852	broad.mit.edu;ucsc.edu	37	3	14555217	14555217	+	RNA	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	GRIP2	.	.	.	.	GCCAGTGCGGCGT	.	140.0	40.0	121.0	0.0	.	69
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86416221	86416221	+	Silent	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	GRM3	NM_000840	exon3	c.C1113T	p.R371R	CAGGCGCGTCTGC	.	88.0	36.0	95.0	0.0	.	528
HCN4	10021	broad.mit.edu;mdanderson.org	37	15	73615574	73615574	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HCN4	NM_005477	exon8	c.C2860G	p.L954V	CCGGGAGTCCCAG	.	15.0	7.0	27.0	0.0	.	96
HELB	92797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66703544	66703544	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HELB	NM_033647	exon4	c.A836T	p.Q279L	TTTGTCAGTGTGA	.	156.0	101.0	147.0	0.0	.	515
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	42048714	42048714	+	Silent	SNP	C	C	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HIVEP3	NM_024503	exon4	c.G1755C	p.R585R	CAGCATCCGGGGG	.	91.0	68.0	115.0	0.0	.	157
HPD	3242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122287654	122287654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HPD	NM_002150	exon8	c.A457G	p.I153V	GGCCGATGTAGTT	.	165.0	36.0	140.0	0.0	.	90
HSH2D	84941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16263989	16263989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_032855	exon6	c.A352G	p.R118G	CCGCGCAGGGAGC	.	74.0	9.0	62.0	1.0	.	.
HSPA6	3310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161495008	161495008	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HSPA6	NM_002155	exon1	c.T560A	p.L187Q	ATGGGCTGGACCG	.	314.0	120.0	267.0	0.0	.	226
IDO2	169355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39873103	39873103	+	Silent	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	IDO2	NM_194294	exon11	c.C1245A	p.I415I	GTCAATCCTTCAC	.	92.0	39.0	95.0	0.0	.	24
IFNGR1	3459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	137519200	137519200	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	IFNGR1	NM_000416	exon7	c.A1438T	p.R480X	TTGGTCTATAACC	.	161.0	88.0	137.0	0.0	.	91
ITIH6	347365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54780134	54780134	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_198510	exon11	c.T3302A	p.L1101Q	CCATTCAGTGTGA	.	168.0	82.0	145.0	0.0	.	.
KCNG1	3755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49621256	49621256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KCNG1	NM_002237	exon3	c.A862G	p.I288V	CCTGAATGAGCCG	.	256.0	113.0	196.0	0.0	.	515
KCNQ5	56479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	73879546	73879546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KCNQ5	NM_001160133	exon12	c.C1603T	p.P535S	CTCACCCCACCAC	.	195.0	98.0	150.0	0.0	.	158
KCNS1	3787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	43727336	43727336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KCNS1	NM_002251	exon4	c.G77A	p.G26E	CTCCTCCCTGCGG	.	52.0	18.0	47.0	0.0	.	90
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44177224	44177224	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KCTD8	NM_198353	exon2	c.T1005A	p.D335E	TTTCCTATCTTCA	.	113.0	53.0	116.0	0.0	.	92
KIF4B	285643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	154395188	154395188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KIF4B	NM_001099293	exon1	c.A1769G	p.N590S	ATGTCAACCAAGC	.	157.0	7.0	145.0	0.0	.	1
KLHL4	56062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	86873049	86873049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	KLHL4,NS,carcinoma,0	KLHL4	NM_019117	exon4	c.C842A	p.P281H	TCCATCCTTCAAA	.	343.0	155.0	335.0	0.0	.	133
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135009191	135009191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KNDC1	NM_152643	exon10	c.G1600A	p.V534I	GCCGCCGTTCTGT	.	257.0	65.0	346.0	0.0	.	229
KRT34	3885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39535916	39535916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KRT34	NM_021013	exon4	c.T782C	p.V261A	AGGTCCACAGTGG	.	126.0	89.0	188.0	0.0	.	90
KRT38	8687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39597173	39597173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KRT38	NM_006771	exon1	c.A1G	p.M1V	AGGTCATGGTGTT	.	153.0	118.0	198.0	0.0	.	92
KRTAP4-2	85291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39334191	39334191	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KRTAP4-2	NM_033062	exon1	c.T226A	p.C76S	GACGGCAGCAGGT	.	85.0	66.0	74.0	0.0	.	44
MAGEB18	286514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	26157856	26157856	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MAGEB18	NM_173699	exon2	c.A754T	p.K252X	CAGCTAAAGTACC	.	251.0	79.0	245.0	0.0	.	130
MAGEC3	139081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	140983104	140983104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MAGEC3	NM_138702	exon5	c.T959C	p.L320P	TTGCACTGTGGGA	.	337.0	132.0	329.0	1.0	.	555
MAK	4117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	10818123	10818123	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MAK	NM_005906	exon4	c.G238T	p.E80X	TATATTCAAATAT	.	150.0	54.0	139.0	0.0	.	335
MAMDC4	158056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139749459	139749459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MAMDC4	NM_206920	exon10	c.C1094T	p.P365L	TGGGGCCCGGCGC	.	74.0	37.0	42.0	0.0	.	156
MED18	54797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28657195	28657195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MED18	NM_017638	exon2	c.A22G	p.M8V	GTCACCATGATGC	.	137.0	113.0	159.0	0.0	.	226
MIR600HG	81571	ucsc.edu;mdanderson.org	37	9	125873077	125873077	+	RNA	SNP	A	A	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	.	.	.	.	AAAATGAGCCCTC	.	111.0	45.0	93.0	0.0	.	.
MSANTD1	345222	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	3251094	3251094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001042690	exon1	c.G145T	p.A49S	ACGGACGCCGAGA	.	90.0	29.0	66.0	0.0	.	.
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9065780	9065780	+	Silent	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MUC16	NM_024690	exon3	c.T21666A	p.T7222T	GGCAACAGTTGTA	.	153.0	106.0	270.0	1.0	.	566
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16761637	16761637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MYO10	NM_012334	exon17	c.G1675T	p.G559C	AGATACCTCGGAC	.	53.0	29.0	59.0	0.0	.	3
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52622690	52622690	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MYO5A	NM_000259	exon34	c.A4340T	p.Q1447L	TCCATCTGGCCCA	.	154.0	101.0	192.0	0.0	.	93
MYRF	745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61547380	61547380	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001127392	exon17	c.C2314G	p.L772V	ATTGCCCTGGTGG	.	270.0	129.0	296.0	0.0	.	.
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	113078628	113078628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NCAM1	NM_001242608	exon8	c.A820G	p.I274V	CTGACCATCAAAA	.	95.0	37.0	75.0	0.0	.	23
NEB	4703	broad.mit.edu;bcgsc.ca	37	2	152418677	152418677	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NEB	NM_001271208	exon121	c.T18943G	p.W6315G	TATCCCAAACGTA	.	90.0	7.0	81.0	0.0	.	145
NEB	4703	broad.mit.edu;bcgsc.ca	37	2	152502668	152502668	+	Silent	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NEB	NM_004543	exon55	c.A7512G	p.K2504K	GTTTGCTTTAGCC	.	136.0	6.0	106.0	0.0	.	145
NET1	10276	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	5494450	5494450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NET1	NM_001047160	exon5	c.A493G	p.K165E	ACCATGAAGGAGT	.	146.0	8.0	109.0	0.0	.	290
NSDHL	50814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152018893	152018893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NSDHL	NM_015922	exon3	c.A193G	p.N65D	GCTGTCAATGTAT	.	229.0	102.0	240.0	0.0	.	130
OR9G9	504191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56468094	56468094	+	Silent	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001013358	exon1	c.C231A	p.T77T	CTACACCCCAAAG	.	234.0	53.0	199.0	0.0	.	.
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80730730	80730730	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_173591	exon41	c.G4779C	p.K1593N	TAAGAAGTTAAAT	.	116.0	61.0	81.0	0.0	.	.
OXR1	55074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	107719001	107719001	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	OXR1	NM_001198532	exon8	c.G1255T	p.E419X	AATCTTGAAATGG	.	177.0	19.0	80.0	0.0	.	68
PAPD5	64282	broad.mit.edu;bcgsc.ca	37	16	50259196	50259196	+	Silent	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PAPD5	NM_001040284	exon11	c.A1755G	p.V585V	TGATGTAGTAAGT	.	121.0	45.0	99.0	2.0	.	205
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	55996688	55996688	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PCDH15	NM_001142763	exon10	c.G895T	p.E299X	TCAGTTCTTCCTG	.	156.0	42.0	129.0	0.0	.	193
PCDH9	5101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	67801363	67801363	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PCDH9	NM_203487	exon2	c.G1210T	p.E404X	CTCTTTCAATAAA	.	71.0	62.0	108.0	0.0	.	96
PCF11	51585	hgsc.bcm.edu;bcgsc.ca	37	11	82879771	82879771	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PCF11	NM_015885	exon8	c.2394delG	p.M798fs	ACAAATGGGGGGA	.	117.0	16.0	80.0	0.0	.	23
PDE4DIP	9659	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	144923732	144923732	+	Silent	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PDE4DIP	NM_001002811	exon2	c.A1215T	p.A405A	GAGTTCTGCCAAG	.	448.0	125.0	410.0	0.0	.	663
PEPD	5184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34001941	34001941	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PEPD	NM_000285	exon3	c.A322T	p.M108L	TTCCCATCCAGGT	.	88.0	30.0	64.0	0.0	.	92
PGLYRP4	57115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153318651	153318651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PGLYRP4	NM_020393	exon3	c.C66A	p.N22K	TGTTTTGTTCCAG	.	302.0	141.0	229.0	0.0	.	94
PHF5A	84844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41863491	41863491	+	Silent	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PHF5A	NM_032758	exon3	c.T204C	p.D68D	ATAGGCATCAGAG	.	141.0	99.0	171.0	0.0	.	91
PHLDB2	90102	hgsc.bcm.edu;bcgsc.ca	37	3	111603109	111603109	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PHLDB2	NM_001134437	exon3	c.T266G	p.L89R	TAACCCTCTCACA	.	111.0	68.0	100.0	0.0	.	96
PHLDB2	90102	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	111603106	111603106	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PHLDB2	NM_001134437	exon3	c.263delC	p.T88fs	ATTTAACCCTCTC	.	111.0	66.0	102.0	0.0	.	96
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	PIK3CA,brain,glioma,0	PIK3CA	NM_006218	exon10	c.G1624A	p.E542K	CTCTCTGAAATCA	.	361.0	157.0	331.0	0.0	.	27752
PIP5K1B	8395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71491629	71491629	+	Silent	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PIP5K1B	NM_003558	exon6	c.A237T	p.P79P	CTACCCAGACTTT	.	127.0	57.0	102.0	0.0	.	240
PIWIL2	55124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22146165	22146165	+	Silent	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PIWIL2	NM_001135721	exon8	c.T972C	p.N324N	CTACAATGTTGTT	.	188.0	105.0	185.0	0.0	.	91
PLXDC2	84898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	20453406	20453406	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PLXDC2	NM_032812	exon7	c.793delT	p.L265fs	CCTGTCTTGGTCA	.	105.0	43.0	86.0	0.0	.	93
PPP1R3F	89801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	49126933	49126933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PPP1R3F	NM_033215	exon1	c.C601T	p.R201C	GTCCCGCGCAGCC	.	36.0	14.0	28.0	0.0	.	229
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	69104009	69104009	+	Missense_Mutation	SNP	G	G	T	rs202233704	alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PREX2	NM_024870	exon36	c.G4399T	p.A1467S	AAAGCTGCCTATG	.	445.0	26.0	233.0	0.0	G|0.999;A|0.000	390
PRKDC	5591	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	48815178	48815178	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PRKDC	.	.	.	.	GCCTCTTGAAAGC	.	74.0	35.0	87.0	0.0	.	1515
PRSS37	136242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141537672	141537672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PRSS37	NM_001171951	exon3	c.C418A	p.Q140K	TTTCTTGGCTCCA	.	175.0	78.0	214.0	0.0	.	91
PSMD1	5707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231937074	231937074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PSMD1	NM_002807	exon7	c.G826T	p.A276S	CCTATTGCTTCTG	.	113.0	18.0	104.0	0.0	.	92
PTCHD4	442213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	48036326	48036326	+	Silent	SNP	C	C	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001013732	exon1	c.G66C	p.V22V	GCGAAGCACCTGC	.	127.0	61.0	78.0	0.0	.	.
PTH2R	5746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	209345847	209345847	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PTH2R	NM_005048	exon10	c.1034delG	p.W345fs	AAATCTGGGAGAC	.	258.0	161.0	212.0	0.0	.	502
PTPRQ	374462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80936556	80936556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001145026	exon20	c.G3253T	p.D1085Y	ACTTCAGACTTTG	.	207.0	25.0	173.0	0.0	.	.
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	52322116	52322116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PXDNL	NM_144651	exon17	c.C2068T	p.R690W	TGTACCGGAATTC	.	108.0	56.0	121.0	0.0	.	70
RAI2	10742	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	17819079	17819079	+	Missense_Mutation	SNP	C	C	T	rs140631545		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RAI2	NM_001172739	exon3	c.G1052A	p.R351Q	GATTTCCGGTGGG	.	149.0	12.0	132.0	0.0	C|1.000;T|0.000	131
RAP1GAP2	23108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2929754	2929754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RAP1GAP2	NM_015085	exon21	c.G1976A	p.S659N	GCGACAGTGGGGT	.	119.0	98.0	144.0	0.0	.	1
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	53540730	53540730	+	Splice_Site	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RB1CC1	NM_014781	exon23	c.4500-2A>C	.	GAAAACTGAATAA	.	75.0	22.0	51.0	0.0	.	170
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103292164	103292164	+	Silent	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RELN	NM_173054	exon15	c.C1836A	p.I612I	AGCACAGATCTCA	.	76.0	42.0	104.0	0.0	.	574
RGS18	64407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	192128370	192128370	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RGS18	NM_130782	exon2	c.G140C	p.R47T	GAAATAGACTAAG	.	141.0	15.0	81.0	0.0	.	229
RIMBP3	85376	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	20458548	20458548	+	Silent	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_015672	exon1	c.C2754G	p.L918L	CGCTGGGAGTTGA	.	652.0	37.0	1012.0	0.0	.	.
RNASET2	8635	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167343204	167343204	+	Missense_Mutation	SNP	C	C	T	rs41269593	byfrequency	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RNASET2	NM_003730	exon9	c.G643A	p.E215K	CCGGCTCGGTGCA	.	55.0	16.0	64.0	0.0	C|0.996;T|0.004	90
RPS6KA6	27330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83389790	83389790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RPS6KA6	NM_014496	exon8	c.G646A	p.D216N	GCATACCTGTTAA	.	144.0	47.0	109.0	0.0	.	615
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134989876	134989876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SAGE1	NM_018666	exon10	c.C1035A	p.H345Q	CACTCACAATGTC	.	235.0	97.0	215.0	0.0	.	133
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92732475	92732475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SAMD9	NM_001193307	exon2	c.G2936T	p.C979F	ACTCCACAGTAGT	.	122.0	47.0	147.0	0.0	.	140
SCAI	286205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127734043	127734043	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SCAI	NM_173690	exon17	c.A1549T	p.S517C	GCATGCTTGACAA	.	197.0	93.0	147.0	0.0	.	138
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38888226	38888226	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SCN11A	NM_014139	exon26	c.T5335A	p.S1779T	AGCTAGACAAGTC	.	191.0	99.0	211.0	0.0	.	99
SIK1	150094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44838314	44838314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SIK1	NM_173354	exon12	c.C1570T	p.P524S	TGGCCGGGGTGCC	.	55.0	39.0	52.0	0.0	.	346
SLC18A2	6571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	119001223	119001223	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SLC18A2	NM_003054	exon2	c.G19C	p.A7P	GAGCTGGCGCTGG	.	61.0	38.0	86.0	0.0	.	90
SLC25A12	8604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	172700890	172700890	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SLC25A12	NM_003705	exon5	c.C454T	p.Q152X	GAAACTGCGTGAA	.	77.0	49.0	85.0	0.0	.	90
SLC44A5	204962	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	75683604	75683604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SLC44A5	NM_152697	exon18	c.C1571A	p.A524E	ATTAATGCAATAA	.	99.0	69.0	126.0	1.0	.	95
SLC44A5	204962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	75683603	75683603	+	Silent	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SLC44A5	NM_152697	exon18	c.A1572C	p.A524A	AATTAATGCAATA	.	102.0	71.0	126.0	0.0	.	95
SPATA5	166378	hgsc.bcm.edu;bcgsc.ca	37	4	123978434	123978445	+	Frame_Shift_Del	DEL	AAAGGGGCAGGT	AAAGGGGCAGGT	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	AAAGGGGCAGGT	AAAGGGGCAGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SPATA5	NM_145207	exon13	c.2204_2213del	p.735_738del	CAGTTGAAAGGGG	.	148.0	0.0	182.0	0.0	.	90
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158590172	158590172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SPTA1	NM_003126	exon44	c.C6205A	p.P2069T	GCACAGGCTCTGA	.	423.0	36.0	307.0	0.0	.	142
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66463896	66463896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SPTBN2	NM_006946	exon20	c.G4130A	p.R1377H	AGGCTGCGGGCCT	.	66.0	23.0	48.0	0.0	.	155
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104149204	104149204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	STAB2	NM_017564	exon62	c.A6839G	p.N2280S	GACCCAACAAGAG	.	156.0	86.0	149.0	0.0	.	104
STAT6	6778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57493655	57493655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	STAT6	NM_001178079	exon15	c.G1639A	p.V547I	TAGTAACGTACTG	.	169.0	43.0	185.0	0.0	.	849
STRIP1	85369	broad.mit.edu;bcgsc.ca	37	1	110586378	110586378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_033088	exon10	c.T1186C	p.F396L	GAGACGTTTCCCC	.	162.0	7.0	181.0	0.0	.	.
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu	37	20	58467120	58467121	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SYCP2	NM_014258	exon23	c.2289_2290insA	p.N763fs	TTGCACATTTTTG	.	195.0	15.0	150.0	0.0	.	525
SYNGAP1	8831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	33411166	33411166	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SYNGAP1	NM_006772	exon15	c.G2837C	p.G946A	GCCATGGAGGGGG	.	123.0	71.0	104.0	0.0	.	48
SYNPO2L	79933	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	10	75414002	75414002	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SYNPO2L	NM_001114133	exon2	c.C142T	p.R48X	TCTCTCGGAGTCC	.	143.0	14.0	175.0	0.0	.	91
T	6862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	166571945	166571945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	T	NM_003181	exon9	c.C1166T	p.P389L	GAGACCGGATGGG	.	151.0	48.0	117.0	0.0	.	516
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70617219	70617219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TAF1	NM_004606	exon23	c.G3583A	p.E1195K	CGAGATGAAGAGG	.	569.0	217.0	520.0	1.0	.	900
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101670763	101670763	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TBC1D8	NM_001102426	exon4	c.C393T	p.A131A	CTGCTCGGCGAGC	.	87.0	14.0	64.0	0.0	.	25
TCF4	6925	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	53018190	53018190	+	Silent	SNP	G	G	A	rs201061418	alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TCF4	NM_001243226	exon8	c.C720T	p.T240T	CGAAAGGGTTCCT	.	205.0	102.0	182.0	1.0	G|0.999;C|0.000	523
TCP10L	140290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33954534	33954534	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TCP10L	NM_144659	exon3	c.C336T	p.H112H	CCCCGCGTGTGGG	.	240.0	112.0	321.0	0.0	.	90
TECRL	253017	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	65274943	65274943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TECRL	NM_001010874	exon1	c.G127A	p.A43T	GGCCCGCTGAGAG	.	123.0	12.0	123.0	0.0	.	90
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183601698	183601698	+	Missense_Mutation	SNP	G	G	A	rs193270446	by1000genomes	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001080477	exon9	c.G1642A	p.A548T	ACAGCCGCCTGTC	.	161.0	46.0	123.0	0.0	G|0.999;A|0.001	.
TINAG	27283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	54186162	54186162	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TINAG	NM_014464	exon3	c.C487T	p.Q163X	ATTGAACAGGTCA	.	44.0	26.0	49.0	0.0	.	93
TMPRSS7	344805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	111794166	111794166	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TMPRSS7	NM_001042575	exon13	c.1406-2A>G	.	CACCAAAGCCTGC	.	104.0	6.0	109.0	0.0	.	70
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7579312	7579312	+	Silent	SNP	C	C	A	rs55863639		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	TP53,mouth,carcinoma,-1	TP53	NM_000546	exon4	c.G375T	p.T125T	ACTGACCGTGCAA	.	159.0	124.0	157.0	0.0	.	70225
TRAF7	84231	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2225896	2225896	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TRAF7	NM_032271	exon18	c.A1688T	p.Y563F	GCGTCTACTCCAT	.	217.0	87.0	195.0	1.0	.	661
TRIP12	9320	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230672989	230672989	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TRIP12	NM_004238	exon15	c.A2174T	p.Y725F	AGTTCATACAACT	.	30.0	5.0	43.0	0.0	.	572
TROVE2	6738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	193046176	193046176	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TROVE2	NM_004600	exon5	c.T1082G	p.F361C	AAACATTTAAGGT	.	154.0	64.0	90.0	0.0	.	115
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116599692	116599692	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TRPS1	NM_014112	exon5	c.A2236T	p.I746L	TGGATATGGCATG	.	465.0	84.0	267.0	0.0	.	229
UBE2D3	7323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	103722609	103722609	+	Splice_Site	SNP	A	A	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	UBE2D3	NM_003340	exon7	c.304+2T>G	.	ATATTTACCTTTA	.	239.0	179.0	274.0	0.0	.	226
UNC79	57578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94079314	94079314	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_020818	exon27	c.A3395T	p.K1132M	CGGTCAAGCGACA	.	104.0	84.0	136.0	0.0	.	.
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216073535	216073535	+	Silent	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	USH2A	NM_206933	exon40	c.G7476A	p.S2492S	GCTTAACGATGCA	.	94.0	35.0	62.0	0.0	.	115
VEGFC	7424	hgsc.bcm.edu;bcgsc.ca	37	4	177605087	177605087	+	Frame_Shift_Del	DEL	A	A	-	rs72533463	alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	VEGFC	NM_005429	exon7	c.1253delT	p.M418fs	CTCATCATTTGTG	.	103.0	49.0	83.0	0.0	.	710
VEGFC	7424	hgsc.bcm.edu;bcgsc.ca	37	4	177605087	177605087	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	VEGFC	NM_005429	exon7	c.T1253G	p.M418R	CTCATCATTTGTG	.	108.0	8.0	84.0	0.0	.	710
WDFY4	57705	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49917873	49917873	+	Silent	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	WDFY4	NM_020945	exon2	c.A96T	p.P32P	TGTCCCACATGGA	.	65.0	21.0	68.0	1.0	.	22
WDR64	128025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	241946598	241946598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	WDR64	NM_144625	exon22	c.C2590T	p.R864C	TCCTGGCGTGCTC	.	139.0	14.0	98.0	0.0	.	91
ZMYM3	9203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70467743	70467743	+	Silent	SNP	C	C	T	rs200745411		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZMYM3	NM_005096	exon12	c.G1989A	p.L663L	TTTGTACAGCAGC	.	204.0	67.0	190.0	0.0	.	131
ZNF135	7694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58578450	58578450	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF135	NM_007134	exon4	c.G670C	p.D224H	AAGCCAGACCTAA	.	110.0	34.0	50.0	0.0	.	91
ZNF142	7701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219508734	219508734	+	Silent	SNP	G	G	T	rs185508464	byfrequency;alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF142	NM_001105537	exon8	c.C2505A	p.A835A	GCGGAAGGCTCGC	.	114.0	30.0	114.0	0.0	G|0.998;A|0.002	137
ZNF224	7767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44611314	44611314	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF224	NM_013398	exon6	c.A1001T	p.H334L	ATAGTCATCGCAT	.	175.0	44.0	74.0	0.0	.	92
ZNF260	339324	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37005748	37005748	+	Silent	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF260	NM_001166038	exon3	c.A393T	p.T131T	GGTTCCTGTATGA	.	211.0	40.0	86.0	1.0	.	90
ZNF354C	30832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178505747	178505747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF354C	NM_014594	exon5	c.C314A	p.T105K	AAGAAACATCTCA	.	168.0	19.0	153.0	0.0	.	91
ZNF567	163081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	37210908	37210908	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF567	NM_152603	exon4	c.A1189T	p.K397X	TGTGGGAAATCCT	.	97.0	10.0	39.0	0.0	.	90
ZNF91	7644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	23544469	23544469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF91	NM_003430	exon4	c.G1312A	p.E438K	CACATTCTTCACA	.	51.0	9.0	62.0	0.0	.	90