Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABR	29	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	973210	973210	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABR	NM_021962	exon9	c.G1015C	p.G339R	CTCACCCTGCAGA	.	94.0	35.0	69.0	0.0	.	91
ABR	29	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	973214	973214	+	Silent	SNP	A	A	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABR	NM_021962	exon9	c.T1011A	p.S337S	CCCTGCAGAGGTC	.	101.0	41.0	70.0	0.0	.	91
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79069906	79069906	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ADAMTS7	NM_014272	exon9	c.C1347T	p.D449D	AGGGTCGTCCAGG	.	61.0	17.0	55.0	0.0	.	226
ALDH8A1	64577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	135265052	135265052	+	Missense_Mutation	SNP	C	C	T	rs200812012		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ALDH8A1	NM_022568	exon2	c.G191A	p.R64H	GGGCTGCGGGATG	.	41.0	27.0	33.0	0.0	.	94
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89350737	89350737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ANKRD11	NM_001256183	exon9	c.G2213A	p.R738H	TTCGAACGGTCTT	.	426.0	206.0	578.0	0.0	.	139
ANKRD34A	284615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145474788	145474788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ANKRD34A	NM_001039888	exon4	c.G1460T	p.S487I	TCCAGAGTCTAGG	.	125.0	28.0	35.0	0.0	.	68
AP5Z1	9907	ucsc.edu;bcgsc.ca	37	7	4830316	4830316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_014855	exon16	c.G1951A	p.G651S	GCCATCGGCGAGT	.	45.0	5.0	38.0	0.0	.	.
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160106761	160106761	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ATP1A2	NM_000702	exon20	c.A2780T	p.Q927L	TGGTGCAGTGGGC	.	286.0	52.0	116.0	0.0	.	518
BAZ1B	9031	hgsc.bcm.edu;bcgsc.ca	37	7	72903721	72903721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BAZ1B	NM_032408	exon6	c.A694G	p.I232V	TGATGATCTAGGT	.	214.0	12.0	269.0	0.0	.	159
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1472640	1472640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BRSK2	NM_001256630	exon15	c.C1673T	p.S558L	CAGAGTCGTCCCC	.	50.0	20.0	43.0	0.0	.	333
C7orf43	55262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99752913	99752913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C7orf43	NM_018275	exon10	c.C1561A	p.Q521K	GCTGCTGGTGGGA	.	31.0	8.0	29.0	0.0	.	90
C8orf22	492307	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	49985398	49985398	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001256598	exon2	c.C9T	p.S3S	GGCATCCGTACCT	.	158.0	40.0	190.0	0.0	.	.
C8orf34	116328	hgsc.bcm.edu;bcgsc.ca	37	8	69434170	69434170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C8orf34	NM_052958	exon6	c.G902T	p.W301L	ACCAATGGGAAAG	.	95.0	7.0	128.0	0.0	.	153
CALY	50632	ucsc.edu;bcgsc.ca	37	10	135140403	135140403	+	Silent	SNP	G	G	A	rs142159746	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CALY	NM_015722	exon4	c.C339T	p.C113C	GTCGGGGCAGGTG	.	93.0	10.0	70.0	2.0	G|0.994;A|0.006	68
CCDC146	57639	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	76922297	76922297	+	Missense_Mutation	SNP	A	A	C	rs77337116	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CCDC146	NM_020879	exon18	c.A2444C	p.N815T	TCAAAAATGCAAC	.	41.0	5.0	50.0	0.0	A|0.998;C|0.002	70
CD2BP2	10421	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	30365266	30365266	+	Missense_Mutation	SNP	G	G	A	rs149209324	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CD2BP2	NM_006110	exon4	c.C331T	p.R111W	CATCCCGGTTCAG	.	58.0	6.0	46.0	0.0	G|0.999;A|0.001	91
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238249681	238249681	+	Silent	SNP	G	G	A	rs145136426	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COL6A3	NM_004369	exon38	c.C7878T	p.S2626S	CTCAGCGCTGTCT	.	196.0	36.0	189.0	0.0	G|1.000;A|0.000	526
COL8A1	1295	ucsc.edu;bcgsc.ca	37	3	99514182	99514182	+	Silent	SNP	C	C	T	rs61753448	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COL8A1	NM_001850	exon5	c.C1437T	p.L479L	GCTTCTCGGACCT	.	31.0	6.0	32.0	0.0	C|0.996;T|0.004	90
CPXM2	119587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	125639753	125639753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CPXM2	NM_198148	exon2	c.G377T	p.R126L	GCCACACGGACAC	.	203.0	61.0	207.0	0.0	.	92
CPZ	8532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	8605903	8605903	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CPZ	NM_001014447	exon4	c.C697T	p.Q233X	CCCGGCCAGCACG	.	88.0	46.0	55.0	0.0	.	93
CYP11B2	1585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143994118	143994118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CYP11B2	NM_000498	exon8	c.C1226T	p.S409L	CCCAGCGAGTAGA	.	106.0	15.0	92.0	0.0	.	90
DGCR6L	85359	hgsc.bcm.edu;bcgsc.ca	37	22	20302911	20302911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DGCR6L	NM_033257	exon4	c.G461A	p.S154N	AGTGTGCTCTGCT	.	134.0	10.0	91.0	0.0	.	90
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38150949	38150949	+	Silent	SNP	T	T	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DLEC1	NM_007337	exon22	c.T3156A	p.P1052P	CCTCCCTTGTCAC	.	78.0	11.0	65.0	0.0	.	161
DUSP21	63904	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	44703615	44703615	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DUSP21	NM_022076	exon1	c.G237A	p.S79S	TGACTCGCGTCTC	.	127.0	97.0	83.0	1.0	.	289
ELK1	2002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47496430	47496430	+	Silent	SNP	C	C	T	rs143440705		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ELK1	NM_001114123	exon6	c.G1170A	p.P390P	CTTGGCCGGGCTA	.	122.0	15.0	91.0	0.0	C|1.000;T|0.000	660
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	127873149	127873149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FBN2	NM_001999	exon1	c.G148T	p.A50S	CTGTAGCGGACCG	.	51.0	16.0	17.0	0.0	.	146
GALNTL5	168391	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	7	151664464	151664464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GALNTL5	NM_145292	exon2	c.G133A	p.A45T	CTGTCAGCTTGGT	.	203.0	12.0	264.0	0.0	.	92
GCNT2	2651	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10529561	10529561	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GCNT2	NM_145649	exon3	c.A417G	p.A139A	AGGTGCAGTGAAA	.	111.0	40.0	69.0	1.0	.	92
GPR98	84059	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	90079720	90079720	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GPR98	NM_032119	exon67	c.A13499C	p.H4500P	GGCGCCACCTAGT	.	116.0	27.0	92.0	1.0	.	103
GTF2IRD1	9569	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	73932488	73932488	+	Silent	SNP	C	C	G	rs112098981	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GTF2IRD1	NM_001199207	exon5	c.C537G	p.A179A	AAGGGCCAGTGTG	.	91.0	9.0	74.0	0.0	C|0.996;G|0.004	94
GTPBP8	29083	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	112711969	112711969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GTPBP8	NM_014170	exon2	c.C433A	p.P145T	AAAAAACCAGTAT	.	284.0	17.0	360.0	0.0	.	90
HIPK1	204851	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114500821	114500821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HIPK1	NM_198268	exon8	c.A1889G	p.Q630R	CCCAGCAGGGTGT	.	229.0	95.0	229.0	1.0	.	361
HTATSF1	27336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135593320	135593320	+	Silent	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HTATSF1	NM_001163280	exon10	c.C1416G	p.P472P	CTGCCCCAAAAGA	.	72.0	14.0	66.0	0.0	.	132
IGF2R	3482	ucsc.edu;bcgsc.ca	37	6	160471532	160471532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	IGF2R	NM_000876	exon19	c.A2542G	p.S848G	TCCATCAGTAACT	.	54.0	5.0	53.0	0.0	.	118
KCNJ2	3759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	68172290	68172290	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KCNJ2	NM_000891	exon2	c.T1110C	p.N370N	CTCAAATGCAAAT	.	144.0	14.0	93.0	0.0	.	90
KIAA0317	9870	ucsc.edu;bcgsc.ca	37	14	75131540	75131540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIAA0317	NM_001039479	exon18	c.A2192G	p.K731R	TTTACCTTTTCTC	.	43.0	4.0	62.0	0.0	.	525
KIF17	57576	ucsc.edu;bcgsc.ca	37	1	21014017	21014017	+	Missense_Mutation	SNP	G	G	A	rs114229809	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIF17	NM_020816	exon8	c.C1802T	p.P601L	TCCTGCGGCTCCT	.	42.0	4.0	47.0	0.0	G|0.999;A|0.001	94
KIF26B	55083	hgsc.bcm.edu;bcgsc.ca	37	1	245862258	245862258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIF26B	NM_018012	exon14	c.G6097A	p.A2033T	GTCCGCGCGAAGT	.	172.0	8.0	76.0	0.0	.	25
KRT83	3889	hgsc.bcm.edu;bcgsc.ca	37	12	52708547	52708547	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KRT83	NM_002282	exon9	c.C1350T	p.S450S	CGGCCGGGAGCCC	.	111.0	10.0	87.0	0.0	.	91
LBP	3929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36999419	36999419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LBP	NM_004139	exon11	c.G1187A	p.S396N	ATACCAGCAAGAT	.	233.0	22.0	135.0	0.0	.	91
LRIT2	340745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	85981835	85981835	+	Silent	SNP	G	G	A	rs140185624	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LRIT2	NM_001017924	exon3	c.C1494T	p.R498R	ACAGCCGCGCAGG	.	109.0	11.0	75.0	0.0	G|1.000;A|0.000	92
MAP3K2	10746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	128075798	128075798	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MAP3K2	NM_006609	exon12	c.G1141T	p.E381X	CCAATTCTCTTCC	.	114.0	13.0	118.0	0.0	.	1403
NACAD	23148	broad.mit.edu;bcgsc.ca	37	7	45120507	45120507	+	Missense_Mutation	SNP	A	A	T	rs188128267	by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001146334	exon6	c.T4519A	p.C1507S	CCTTGCACTCCAG	.	35.0	4.0	40.0	0.0	A|0.999;T|0.000	.
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36046548	36046548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NBEA	NM_015678	exon41	c.C6460T	p.L2154F	GTGGTTCTCAGCA	.	32.0	12.0	22.0	0.0	.	144
NMBR	4829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	142396836	142396836	+	Silent	SNP	G	G	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NMBR	NM_002511	exon3	c.C1122G	p.T374T	AGAATTGGTCACC	.	169.0	46.0	168.0	0.0	.	946
NOX5	79400	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69348934	69348934	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NOX5	NM_024505	exon16	c.G2196A	p.K732K	GAAGAAGGGCAAG	.	111.0	17.0	74.0	1.0	.	136
OR10R2	343406	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158450031	158450031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR10R2	NM_001004472	exon1	c.T364C	p.F122L	CAAATGTTCTTCT	.	657.0	53.0	396.0	0.0	.	161
OR9A4	130075	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141618875	141618875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR9A4	NM_001001656	exon1	c.C200T	p.A67V	TCTCTGCCCTGGA	.	199.0	44.0	205.0	1.0	.	91
PAPPA2	60676	broad.mit.edu;bcgsc.ca	37	1	176671815	176671815	+	Silent	SNP	G	G	A	rs114236977		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PAPPA2	NM_020318	exon9	c.G3309A	p.S1103S	AGCTTCGCCTCCT	.	152.0	10.0	90.0	1.0	G|0.998;A|0.002	548
PIK3C2G	5288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	18439830	18439830	+	Missense_Mutation	SNP	C	C	T	rs186647102	by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PIK3C2G	NM_004570	exon3	c.C728T	p.T243M	GCAATACGAGTCT	.	386.0	41.0	362.0	0.0	C|0.999;T|0.000	1312
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209190043	209190043	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PIKFYVE	NM_015040	exon20	c.C2508T	p.G836G	CCTAGGCTGTACA	.	158.0	23.0	153.0	0.0	.	583
PLIN4	729359	hgsc.bcm.edu;bcgsc.ca	37	19	4517618	4517618	+	Silent	SNP	G	G	A	rs7250771		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PLIN4	NM_001080400	exon1	c.C99T	p.A33A	GTCAGCGGCCGGC	.	101.0	7.0	47.0	0.0	G|0.991;A|0.009	68
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24741360	24741360	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	POLA1	NM_016937	exon11	c.G1158A	p.T386T	GCGAACGCTTTAC	.	194.0	131.0	175.0	1.0	.	229
PPL	5493	ucsc.edu;bcgsc.ca	37	16	4945711	4945711	+	Missense_Mutation	SNP	C	C	T	rs74003551	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PPL	NM_002705	exon10	c.G979A	p.E327K	CGTCTTCGTGAAA	.	62.0	6.0	75.0	0.0	C|0.997;T|0.003	95
PRDM2	7799	ucsc.edu;bcgsc.ca	37	1	14109178	14109178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRDM2	NM_015866	exon8	c.A4888G	p.S1630G	TTGGCGAGTAAGA	.	56.0	6.0	60.0	0.0	.	116
PRSS16	10279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	27218849	27218849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRSS16	NM_005865	exon6	c.C620T	p.A207V	CGGTCGCCTCCTC	.	115.0	26.0	69.0	0.0	.	94
PSMC2	5701	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	102988209	102988209	+	Silent	SNP	G	G	A	rs61729405	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PSMC2	NM_001204453	exon1	c.G51A	p.K17K	TGAGAAGGACGAC	.	73.0	7.0	78.0	0.0	G|0.994;A|0.006	90
PTPN13	5783	ucsc.edu;bcgsc.ca	37	4	87695667	87695667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PTPN13	NM_080685	exon33	c.G5506A	p.G1836R	AAACCTGGGGACC	.	45.0	4.0	56.0	0.0	.	230
RBBP8	5932	hgsc.bcm.edu;bcgsc.ca	37	18	20562244	20562244	+	Silent	SNP	G	G	A	rs149495397	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RBBP8	NM_203292	exon7	c.G492A	p.P164P	TTCACCGATAACA	.	139.0	8.0	159.0	0.0	G|0.999;A|0.001	659
RCSD1	92241	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167666539	167666539	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RCSD1	NM_052862	exon6	c.G678A	p.E226E	GGGAGAGGGAGTG	.	217.0	65.0	106.0	1.0	.	517
RELN	5649	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	103130238	103130238	+	Silent	SNP	G	G	A	rs78218774	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RELN	NM_173054	exon60	c.C9714T	p.H3238H	GTATCCGTGCCCG	.	64.0	8.0	55.0	0.0	G|0.988;A|0.012	574
SH3RF2	153769	hgsc.bcm.edu;bcgsc.ca	37	5	145393600	145393600	+	Silent	SNP	C	C	T	rs35761990	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SH3RF2	NM_152550	exon5	c.C1035T	p.D345D	AGCAGACGTTCCT	.	84.0	5.0	88.0	0.0	C|0.990;T|0.010	92
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	148407322	148407322	+	Missense_Mutation	SNP	C	C	T	rs138040787		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SH3TC2	NM_024577	exon11	c.G1973A	p.R658H	TGCAGGCGCTCGG	.	60.0	14.0	46.0	0.0	C|1.000;T|0.000	92
SLC5A11	115584	hgsc.bcm.edu;bcgsc.ca	37	16	24888677	24888677	+	Silent	SNP	G	G	A	rs9932619	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC5A11	NM_052944	exon7	c.G576A	p.T192T	ATACACGGTTGCT	.	133.0	10.0	143.0	0.0	G|0.962;A|0.038	92
SNRNP200	23020	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96952176	96952176	+	Silent	SNP	C	C	T	rs115923152	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SNRNP200	NM_014014	exon29	c.G3876A	p.P1292P	CTTCTCCGGCAAG	.	54.0	11.0	33.0	0.0	C|0.995;T|0.005	162
SNX8	29886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	2317903	2317903	+	Silent	SNP	G	G	A	rs78286162		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SNX8	NM_013321	exon2	c.C132T	p.I44I	CTGCACGATGGCC	.	86.0	11.0	62.0	0.0	G|0.999;A|0.001	290
SP1	6667	ucsc.edu;bcgsc.ca	37	12	53805020	53805020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SP1	NM_138473	exon6	c.T2354C	p.F785S	ATGGCTTCTGAGA	.	36.0	4.0	30.0	0.0	.	228
SPON1	10418	broad.mit.edu;mdanderson.org	37	11	14282206	14282206	+	RNA	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SPON1	.	.	.	.	GCATGCGAACCCG	.	119.0	11.0	105.0	1.0	.	1
T	6862	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	166579327	166579327	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	T	NM_003181	exon4	c.T473A	p.I158N	AGCATGATCTGAG	.	93.0	13.0	101.0	1.0	.	516
TACC2	10579	ucsc.edu;bcgsc.ca	37	10	123845611	123845611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TACC2	NM_206862	exon4	c.A3596G	p.E1199G	CCAGAGAGCTGGG	.	41.0	4.0	30.0	0.0	.	296
TAF4B	6875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	23807168	23807168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TAF4B	NM_005640	exon1	c.C271T	p.P91S	CCTGCTCCTCAGA	.	200.0	33.0	155.0	0.0	.	71
TBC1D2	55357	hgsc.bcm.edu;bcgsc.ca	37	9	100991356	100991356	+	Missense_Mutation	SNP	G	G	A	rs139062706		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TBC1D2	NM_001267571	exon5	c.C856T	p.R286C	TCTGGCGCTTGGC	.	196.0	8.0	216.0	0.0	G|0.999;A|0.001	93
TBX1	6899	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	19751756	19751756	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	TBX1,NS,carcinoma,+1	TBX1	NM_080647	exon5	c.G591A	p.P197P	CCACCCGGACTCG	.	69.0	22.0	47.0	0.0	.	154
TRHR	7201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110131528	110131528	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TRHR	NM_003301	exon2	c.C1041G	p.N347K	TGCTAACTACAGT	.	222.0	27.0	163.0	0.0	.	620
UBE3B	89910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109972536	109972536	+	Silent	SNP	C	C	T	rs61999293	bycluster;byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UBE3B	NM_130466	exon28	c.C3156T	p.R1052R	CCTCCGCGAGAAG	.	94.0	18.0	58.0	0.0	C|0.998;T|0.002	660
USP20	10868	broad.mit.edu;bcgsc.ca	37	9	132636968	132636968	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	USP20	NM_001008563	exon18	c.G1854A	p.K618K	TGCCAAGGAGTGC	.	63.0	6.0	54.0	0.0	.	658
VPS39	23339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42492106	42492106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VPS39	NM_015289	exon2	c.C127T	p.R43W	CCTTCCGAATCCT	.	162.0	29.0	180.0	0.0	.	229
VWA8	23078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	42303780	42303780	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_015058	exon23	c.G2536C	p.V846L	CATCTACTACCAG	.	227.0	24.0	297.0	0.0	.	.
XRCC5	7520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	217012796	217012805	+	Splice_Site	DEL	TTTCCAACAG	TTTCCAACAG	-	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	TTTCCAACAG	TTTCCAACAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	XRCC5	.	.	.	.	TTACTTTTTCCAA	.	289.0	22.0	306.0	0.0	.	970
ZNF777	27153	ucsc.edu;bcgsc.ca	37	7	149152828	149152828	+	Missense_Mutation	SNP	G	G	C	rs76797088	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF777	NM_015694	exon2	c.C286G	p.P96A	CCAGGGGGCCCTG	.	55.0	8.0	50.0	1.0	G|0.987;C|0.013	136
ZNF8	7554	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58806191	58806191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF8	NM_021089	exon4	c.G1017T	p.K339N	GGAGAAGCCCTAT	.	100.0	11.0	82.0	1.0	.	91
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	77607249	77607250	+	Missense_Mutation	DNP	TC	TC	AT	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	p.DP462ES	TAGAGATCCAAGA	.	166.0	65.0	114.0	0.0	.	.