Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACADVL	37	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7126517	7126517	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ACADVL	NM_001270447	exon12	c.G1212A	p.E404E	CCAGGAGAAGCTG	.	90.0	66.0	105.0	1.0	.	93
ADAM17	6868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	9676045	9676045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ADAM17	NM_003183	exon4	c.C368A	p.P123H	GAGTCAGGCTCAC	.	108.0	8.0	123.0	0.0	.	659
AGPAT1	10554	broad.mit.edu;bcgsc.ca	37	6	32138749	32138749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	AGPAT1	NM_006411	exon3	c.T299C	p.V100A	GAGACAACAACAT	.	94.0	4.0	61.0	0.0	.	90
AP3D1	8943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2120931	2120931	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	AP3D1	NM_001261826	exon14	c.A1411C	p.S471R	TGCTGCTGGCCAG	.	66.0	24.0	38.0	0.0	.	90
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141036086	141036086	+	Silent	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ARAP3	NM_022481	exon27	c.G3774T	p.L1258L	CTTGAGCAGCAGC	.	92.0	35.0	86.0	0.0	.	291
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu	37	1	27107084	27107085	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ARID1A	NM_006015	exon20	c.6695_6696insGC	p.R2232fs	TGATGCGGCGGGC	.	22.0	13.0	18.0	0.0	.	584
ASNS	440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97498423	97498423	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ASNS	NM_133436	exon3	c.G46C	p.V16L	ACTGAACAGAAAG	.	186.0	55.0	221.0	0.0	.	91
B3GAT2	135152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	71603895	71603895	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	B3GAT2	NM_080742	exon2	c.C672T	p.N224N	TTTGCCGTTTTCC	.	67.0	18.0	61.0	0.0	.	93
BBOX1	8424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	27137031	27137031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	BBOX1	NM_003986	exon6	c.C566A	p.A189E	TCGATGCAAACAA	.	67.0	24.0	43.0	0.0	.	515
BRPF1	7862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9776191	9776191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	BRPF1	NM_001003694	exon2	c.G367A	p.E123K	GAGGATGAGGAAG	.	116.0	72.0	88.0	0.0	.	92
C9orf96	169436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	136269044	136269044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	C9orf96	NM_153710	exon16	c.G1604T	p.G535V	CTGCAGGCTGCAT	.	49.0	14.0	34.0	0.0	.	334
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	180381668	180381668	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCDC39	NM_181426	exon2	c.T197G	p.L66R	ATTGAGAGCTCTT	.	168.0	13.0	137.0	0.0	.	72
CCDC8	83987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46914889	46914889	+	Silent	SNP	C	C	T	rs142275307	byfrequency	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCDC8	NM_032040	exon1	c.G1179A	p.A393A	GGCCTCCGCCCTC	.	325.0	141.0	182.0	0.0	C|1.000;T|0.000	93
CCND2	894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4383263	4383263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCND2	NM_001759	exon1	c.C57A	p.N19K	CCGCAACCTGCTC	.	75.0	18.0	42.0	0.0	.	1271
CDH26	60437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58560154	58560154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CDH26	NM_177980	exon7	c.C807A	p.N269K	AGGCAACAACCAC	.	80.0	20.0	41.0	0.0	.	93
CHAF1B	8208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	37785409	37785409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CHAF1B	NM_005441	exon12	c.C1289A	p.P430H	GCAGCCCCGGCAC	.	54.0	20.0	35.0	0.0	.	92
CHRNB4	1143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78927919	78927919	+	Silent	SNP	G	G	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CHRNB4	NM_000750	exon2	c.C66G	p.R22R	GGCCACGCGGCAG	.	123.0	108.0	49.0	0.0	.	90
COL16A1	1307	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32121031	32121031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	COL16A1	NM_001856	exon67	c.G4174A	p.G1392S	TCTTGCCAGGTCC	.	204.0	84.0	177.0	1.0	.	98
CSMD3	114788	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113662399	113662399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CSMD3	NM_198123	exon19	c.A3184G	p.T1062A	CACAGGTTGGAAG	.	363.0	84.0	143.0	1.0	.	1132
CYLC1	1538	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83128877	83128877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CYLC1	NM_021118	exon4	c.G1161T	p.L387F	AAATTTGAAGAAA	.	194.0	102.0	181.0	0.0	.	112
DDHD1	80821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	53540463	53540463	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	DDHD1,NS,carcinoma,-2	DDHD1	NM_001160147	exon6	c.T1413C	p.D471D	ACCTCCATCAAGA	.	191.0	77.0	214.0	0.0	.	92
DNAJC4	3338	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63999389	63999389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DNAJC4	NM_005528	exon3	c.G133T	p.A45S	CCTGGTGCCAGCA	.	132.0	39.0	121.0	1.0	.	226
EFCAB4B	84766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	3736844	3736844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	EFCAB4B	NM_001144958	exon16	c.T1764G	p.N588K	GTCCACATTCAAC	.	59.0	15.0	46.0	0.0	.	92
ELAC2	60528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12896302	12896302	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ELAC2	NM_018127	exon24	c.G2314C	p.A772P	CGCCAGCAAACAG	.	25.0	19.0	16.0	0.0	.	90
ELAVL3	1995	bcgsc.ca;mdanderson.org	37	19	11569052	11569052	+	Silent	SNP	G	G	A	rs114284954	byfrequency	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ELAVL3	NM_032281	exon5	c.C537T	p.A179A	CTCTTCGGCCTCA	.	84.0	30.0	56.0	1.0	G|0.996;A|0.004	92
ELMO3	79767	ucsc.edu;bcgsc.ca	37	16	67234641	67234641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ELMO3	NM_024712	exon7	c.A754G	p.S252G	ACCTTGAGCAGCC	.	40.0	4.0	35.0	1.0	.	90
EPC1	80314	ucsc.edu;bcgsc.ca	37	10	32576204	32576204	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	EPC1	NM_001272004	exon8	c.976-2A>G	.	TCTTGCTGCAACA	.	35.0	4.0	37.0	0.0	.	93
EXOC6B	23233	ucsc.edu;bcgsc.ca	37	2	72606935	72606935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	EXOC6B	NM_015189	exon19	c.T2045C	p.L682P	AACAAAAGTTGCA	.	39.0	4.0	30.0	1.0	.	68
FAM13C	220965	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61029860	61029860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FAM13C	NM_198215	exon7	c.C602A	p.P201Q	TGGACTGGTGAGG	.	253.0	127.0	180.0	1.0	.	70
FAM182B	728882	bcgsc.ca;mdanderson.org	37	20	25755526	25755526	+	RNA	SNP	C	C	T	rs112684378		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	GCTGCCCGCTGGT	.	52.0	23.0	30.0	2.0	C|0.500;T|0.500	.
FAM45B	55855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	129629661	129629666	+	RNA	DEL	CTGATG	CTGATG	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	CTGATG	CTGATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FAM45B	.	.	.	.	ACAGCACTGATGC	.	317.0	53.0	331.0	0.0	.	63
FANCA	2175	ucsc.edu;bcgsc.ca	37	16	89836314	89836314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FANCA	NM_000135	exon26	c.T2435C	p.L812P	ACAGGAAGGCCAG	.	44.0	5.0	54.0	1.0	.	1130
FANCG	2189	ucsc.edu;bcgsc.ca	37	9	35079184	35079184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FANCG	NM_004629	exon2	c.C139A	p.L47M	CTTCCAGTGCATC	.	45.0	4.0	38.0	1.0	.	724
FLT1	2321	ucsc.edu;bcgsc.ca	37	13	28942733	28942733	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FLT1	NM_001160030	exon15	c.A2184G	p.S728S	TGATGATGACGAT	.	62.0	6.0	58.0	0.0	.	1406
FRAS1	80144	ucsc.edu;bcgsc.ca	37	4	79284727	79284727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FRAS1	NM_001166133	exon21	c.T2483C	p.L828P	TCTGCCTCAGGTG	.	45.0	4.0	82.0	0.0	.	68
FRMD7	90167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	131212315	131212315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FRMD7	NM_194277	exon12	c.C1730T	p.A577V	ACAAATGCATCTT	.	245.0	113.0	202.0	0.0	.	228
GABRA1	2554	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161318012	161318012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GABRA1	NM_001127643	exon9	c.C812T	p.S271F	AAGTCTCCTTCTG	.	148.0	62.0	156.0	1.0	.	93
GALNT8	26290	broad.mit.edu;mdanderson.org	37	12	4848462	4848462	+	Nonsense_Mutation	SNP	G	G	T	rs111635477	alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GALNT8	NM_017417	exon3	c.G643T	p.E215X	TTGAAGGAAATCA	.	66.0	32.0	58.0	1.0	G|0.500;A|0.500	230
GAS2L2	246176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	34072948	34072948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GAS2L2	NM_139285	exon6	c.C1568T	p.T523I	CCACTTGTAGCAC	.	27.0	9.0	14.0	0.0	.	227
GMPS	8833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	155643090	155643090	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GMPS	NM_003875	exon12	c.A1495T	p.M499L	AAGCTGATGCAAA	.	1011.0	681.0	643.0	1.0	.	229
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37366808	37366808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GOLGA4	NM_001172713	exon15	c.A3497G	p.N1166S	ACTTGAATAAGTC	.	225.0	123.0	207.0	0.0	.	93
GPR64	10149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	19017392	19017392	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GPR64	NM_001184834	exon26	c.G2336T	p.W779L	TTGATCCAGCAGC	.	209.0	20.0	152.0	0.0	.	130
HDAC2	3066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	114264582	114264582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HDAC2	NM_001527	exon12	c.T1311A	p.D437E	CTTATGATCAGCC	.	194.0	71.0	198.0	0.0	.	660
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43484350	43484350	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HECW1	NM_015052	exon11	c.T1579A	p.S527T	CGGGCCTCGGTGA	.	73.0	20.0	58.0	0.0	.	669
HMX3	340784	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	124896950	124896950	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HMX3	NM_001105574	exon2	c.C777T	p.G259G	AGCCGGCCTGGCC	.	85.0	33.0	49.0	1.0	.	68
HPS5	11234	broad.mit.edu;bcgsc.ca	37	11	18318512	18318512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HPS5	NM_181507	exon12	c.A1343G	p.D448G	CCAGAGTCCAAGA	.	105.0	6.0	107.0	1.0	.	133
HUWE1	10075	broad.mit.edu;bcgsc.ca	37	X	53588743	53588743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HUWE1	NM_031407	exon55	c.A7481G	p.E2494G	TCAAACTCAATGA	.	171.0	7.0	133.0	0.0	.	280
IL17REL	400935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50439551	50439551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IL17REL	NM_001001694	exon4	c.C69G	p.C23W	CATCGCGCAGCCG	.	78.0	46.0	43.0	0.0	.	23
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	27448870	27448870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IL21R	NM_181079	exon5	c.C280A	p.H94N	TCGGCCCACAATG	.	38.0	27.0	37.0	0.0	.	660
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	55260049	55260057	+	In_Frame_Del	DEL	CAATGTTGA	CAATGTTGA	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	CAATGTTGA	CAATGTTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IL6ST	NM_175767	exon6	c.575_583del	p.192_195del	AGACTTCAATGTT	.	273.0	73.0	296.0	0.0	.	290
INPP5B	3633	broad.mit.edu;bcgsc.ca	37	1	38339824	38339824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	INPP5B	NM_005540	exon18	c.T1792C	p.C598R	GAAAACAGAACTG	.	88.0	7.0	68.0	1.0	.	227
ITGA2	3673	broad.mit.edu;bcgsc.ca	37	5	52379216	52379216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ITGA2	NM_002203	exon27	c.A3191G	p.D1064G	TGAAAGACGTTCA	.	197.0	11.0	123.0	1.0	.	226
IVL	3713	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152883162	152883162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IVL	NM_005547	exon2	c.G889A	p.D297N	CACCTGGATCAGC	.	220.0	85.0	159.0	2.0	.	93
JPH2	57158	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	20	42815335	42815335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	JPH2	NM_175913	exon1	c.G11T	p.G4V	AAGCGGCCCCCAC	.	15.0	11.0	9.0	0.0	.	91
KIAA1239	57495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	37447823	37447823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001144990	exon7	c.A4213C	p.I1405L	CTGCTGATTACAC	.	48.0	21.0	48.0	0.0	.	.
KY	339855	bcgsc.ca;mdanderson.org	37	3	134348537	134348537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	KY	NM_178554	exon4	c.G263T	p.G88V	TGTGTCCCTACAA	.	202.0	64.0	108.0	2.0	.	24
LAMB3	3914	broad.mit.edu;bcgsc.ca	37	1	209790903	209790903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LAMB3	NM_000228	exon21	c.A3080G	p.K1027R	ACCAGCTTTTCTG	.	84.0	6.0	83.0	0.0	.	156
LCE1E	353135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152759968	152759968	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LCE1E	NM_178353	exon2	c.193delG	p.G65fs	AGCTCTGGGGGCT	.	147.0	39.0	112.0	0.0	.	90
LCN2	3934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130912582	130912582	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LCN2	NM_005564	exon2	c.G204A	p.P68P	AGACCCGCAAAAG	.	232.0	111.0	178.0	0.0	.	90
LMAN1	3998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	57026472	57026472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LMAN1	NM_005570	exon1	c.C5T	p.A2V	GATCCCGCCATCT	.	39.0	27.0	52.0	0.0	.	91
MCM3AP	8888	ucsc.edu;bcgsc.ca	37	21	47693478	47693478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MCM3AP	NM_003906	exon7	c.A2020G	p.K674E	ACTCTTTCACAGC	.	30.0	4.0	25.0	0.0	.	291
METAP1	23173	ucsc.edu;bcgsc.ca	37	4	99955478	99955478	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_015143	exon3	c.A264G	p.R88R	ACTCAGACCACAT	.	42.0	4.0	52.0	0.0	.	.
MVB12B	89853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129157873	129157873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001011703	exon6	c.A559G	p.I187V	ATGGGGATCTGGT	.	166.0	57.0	139.0	2.0	.	.
MYCN	4613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	16082220	16082220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MYCN	NM_005378	exon2	c.A34G	p.M12V	CCGGGCATGATCT	.	268.0	120.0	162.0	0.0	.	1271
MYO1G	64005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	45005391	45005391	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MYO1G	NM_033054	exon17	c.G2226A	p.W742X	CCGGAACCAGCGC	.	23.0	14.0	16.0	0.0	.	137
MYO5B	4645	ucsc.edu;bcgsc.ca	37	18	47367793	47367793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MYO5B	NM_001080467	exon35	c.T4643C	p.F1548S	AACCAGAATGACG	.	38.0	4.0	48.0	0.0	.	72
NLRP6	171389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	281055	281055	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NLRP6	NM_138329	exon4	c.G1321C	p.D441H	CAGGGCGACCTGC	.	72.0	17.0	44.0	0.0	.	583
NPHS1	4868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36339602	36339602	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NPHS1	NM_004646	exon9	c.G1107A	p.R369R	CAGAACCCGCGGG	.	197.0	50.0	63.0	0.0	.	49
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	88472662	88472662	+	Silent	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NTRK3	NM_001012338	exon17	c.C1893A	p.A631A	CCCATGGGCCCTG	.	74.0	39.0	51.0	0.0	.	3538
OC90	729330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	133053841	133053841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OC90	NM_001080399	exon5	c.G275T	p.R92L	AAGTCTCGGGGGC	.	270.0	84.0	151.0	0.0	.	206
OR1A2	26189	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	3101458	3101458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OR1A2	NM_012352	exon1	c.T646C	p.S216P	ATTGTCTCCTATG	.	354.0	32.0	620.0	0.0	.	70
OR4N5	390437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20612767	20612767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OR4N5	NM_001004724	exon1	c.C873A	p.N291K	TCGCAACCAGGAG	.	130.0	65.0	106.0	0.0	.	69
OR4Q3	441669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20215599	20215599	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OR4Q3	NM_172194	exon1	c.C13G	p.Q5E	AAAGAACAAGATT	.	821.0	172.0	868.0	0.0	.	71
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	56106175	56106177	+	In_Frame_Del	DEL	CAT	CAT	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	CAT	CAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PCDH15	NM_001142763	exon7	c.557_559del	p.186_187del	TTGGTCCATCATC	.	158.0	62.0	135.0	0.0	.	193
PCDHGB2	56103	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140741069	140741069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PCDHGB2	NM_018923	exon1	c.C1367T	p.S456F	AGACTTCCTACAT	.	130.0	57.0	161.0	1.0	.	33
PLEKHG5	57449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6530878	6530878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PLEKHG5	NM_001265592	exon15	c.C1696T	p.R566W	TGAGCCGCTGGTG	.	75.0	47.0	52.0	0.0	.	652
PLXNA4	91584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	132192587	132192587	+	Missense_Mutation	SNP	G	G	A	rs200648753		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PLXNA4	NM_001105543	exon2	c.C866T	p.A289V	TTGAAGGCTGTGT	.	81.0	36.0	62.0	1.0	G|0.999;A|0.000	91
POMT2	29954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77746417	77746417	+	Missense_Mutation	SNP	G	G	A	rs148466370		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	POMT2	NM_013382	exon17	c.C1732T	p.R578C	AGAAGCGTAGGCC	.	96.0	37.0	74.0	0.0	G|1.000;A|0.000	91
POTEJ	653781	bcgsc.ca;mdanderson.org	37	2	131414998	131414998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	GAGCAGGAGATGG	.	120.0	40.0	87.0	2.0	.	.
PRRT1	80863	broad.mit.edu;mdanderson.org	37	6	32118206	32118206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PRRT1	NM_030651	exon2	c.C497A	p.P166H	TATCCGGGCGCTA	.	32.0	6.0	14.0	0.0	.	153
PSPC1	55269	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	20277467	20277467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PSPC1	NM_001042414	exon10	c.C1420A	p.Q474K	CCATCTGAGATGG	.	606.0	42.0	655.0	0.0	.	135
RAB40A	142684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102755566	102755566	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RAB40A	NM_080879	exon3	c.A119T	p.E40V	GGGGACTCAGCTG	.	281.0	104.0	236.0	0.0	.	227
RASA1	5921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	86637134	86637134	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RASA1	NM_002890	exon6	c.A1045T	p.K349X	GAAGGAAAAATGT	.	145.0	49.0	167.0	0.0	.	661
RFX1	5989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14092957	14092957	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RFX1	NM_002918	exon5	c.C597T	p.T199T	CTGCTGGGTACCA	.	103.0	50.0	87.0	0.0	.	92
RLIM	51132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73811891	73811891	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RLIM	NM_183353	exon5	c.T1259A	p.M420K	CTGTACATAAAAT	.	185.0	88.0	160.0	0.0	.	228
RUSC1-AS1	284618	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	155290718	155290718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001039517	exon2	c.G562T	p.G188W	GTGCCCCGCCGGG	.	41.0	13.0	18.0	0.0	.	.
RXRB	6257	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33165688	33165688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RXRB	NM_021976	exon4	c.G671T	p.G224V	TTGCAACCCTCAC	.	201.0	43.0	117.0	2.0	.	189
SCN1A	6323	broad.mit.edu;bcgsc.ca	37	2	166897747	166897747	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SCN1A	NM_001165963	exon13	c.A2409G	p.G803G	CAAGTTTCCTACT	.	143.0	6.0	98.0	0.0	.	147
SHF	90525	ucsc.edu;bcgsc.ca	37	15	45465913	45465913	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SHF	NM_138356	exon5	c.T654C	p.V218V	AATGTCAACTGGA	.	42.0	4.0	44.0	0.0	.	69
SLC34A3	142680	broad.mit.edu;bcgsc.ca	37	9	140127320	140127320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SLC34A3	NM_001177317	exon5	c.C389T	p.A130V	TCACAGCCCTGGT	.	62.0	5.0	48.0	0.0	.	90
SPPL2B	56928	broad.mit.edu;bcgsc.ca	37	19	2345304	2345304	+	RNA	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	TCCAGGGTATACT	.	145.0	6.0	80.0	0.0	.	.
SRCAP	10847	broad.mit.edu;bcgsc.ca	37	16	30721368	30721368	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SRCAP	NM_006662	exon8	c.T1053C	p.S351S	CCCCTCTCAAACC	.	81.0	5.0	105.0	0.0	.	94
ST6GALNAC5	81849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	77333366	77333366	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ST6GALNAC5	NM_030965	exon1	c.G6A	p.K2K	AATGAAGACCCTG	.	118.0	52.0	115.0	0.0	.	92
STRADA	92335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61784645	61784645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	STRADA	NM_001003787	exon9	c.A715G	p.K239E	GAACCTTGACACT	.	73.0	48.0	29.0	0.0	.	547
STX16	8675	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57246217	57246217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	STX16	NM_001001433	exon7	c.C656A	p.T219K	GTTTTACAGAGGA	.	129.0	34.0	106.0	1.0	.	91
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64520042	64520042	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SYNE2	NM_182914	exon48	c.C9411T	p.L3137L	AGTTCTCCAAAAC	.	169.0	68.0	213.0	0.0	.	164
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	83250808	83250808	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TMTC2	NM_152588	exon2	c.C103T	p.Q35X	ACTAATCAGGACC	.	158.0	57.0	134.0	0.0	.	92
TPO	7173	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	1497607	1497607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TPO	NM_001206744	exon11	c.C1802A	p.P601H	GCCTGCCTCGCCT	.	107.0	46.0	63.0	1.0	.	332
TRABD2A	129293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85066338	85066338	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001080824	exon3	c.A779C	p.Y260S	CGCTTCCCTATTC	.	193.0	23.0	131.0	0.0	.	.
TRIM66	9866	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8662439	8662439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TRIM66	NM_014818	exon9	c.C1048A	p.P350T	CAGGGGGCTGCCT	.	71.0	21.0	49.0	1.0	.	68
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116616801	116616801	+	Silent	SNP	T	T	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TRPS1	NM_014112	exon4	c.A1395T	p.L465L	ATGTTCTAGCAGT	.	238.0	63.0	106.0	0.0	.	229
TTC40	54777	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134663787	134663787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001200049	exon41	c.C5913A	p.D1971E	CACAGGGTCAGCT	.	128.0	37.0	64.0	1.0	.	.
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179472788	179472788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TTN	NM_001267550	exon276	c.C52726T	p.P17576S	CTCTTGGGATAGG	.	172.0	78.0	120.0	0.0	.	636
TUBB8	347688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94784	94784	+	Silent	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TUBB8	NM_177987	exon2	c.G126T	p.L42L	CAGCTGCAGGTGG	.	63.0	30.0	38.0	0.0	.	69
USP54	159195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75277370	75277370	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	USP54	NM_152586	exon18	c.A2814G	p.P938P	TGACTCTGGAGAT	.	260.0	137.0	170.0	0.0	.	721
VWA8	23078	ucsc.edu;bcgsc.ca	37	13	42301352	42301352	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_015058	exon24	c.C2736T	p.G912G	ATCATTGCCTAGG	.	30.0	4.0	51.0	0.0	.	.
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49982649	49982649	+	Silent	SNP	C	C	T	rs115706447	byfrequency	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	WDFY4	NM_020945	exon14	c.C2700T	p.P900P	CAGCCCCCTCCAC	.	63.0	34.0	40.0	0.0	C|0.993;T|0.007	22
WDR87	83889	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	38378503	38378503	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_031951	exon6	c.G5691C	p.Q1897H	CTTTTCCTGTGTC	.	451.0	122.0	302.0	0.0	.	.
YIPF2	78992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11034659	11034659	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	YIPF2	NM_024029	exon7	c.C501T	p.I167I	GATGCTGATGCCT	.	22.0	10.0	27.0	0.0	.	90
ZC3HC1	51530	ucsc.edu;bcgsc.ca	37	7	129664107	129664107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZC3HC1	NM_016478	exon7	c.A1016G	p.E339G	ACCTGCTCTGAGC	.	27.0	4.0	23.0	0.0	.	90
ZCWPW2	152098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	28566047	28566047	+	Silent	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZCWPW2	NM_001040432	exon9	c.A939T	p.A313A	TCCTGCAGGCAGT	.	326.0	79.0	323.0	0.0	.	24
ZDHHC1	29800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67432171	67432171	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZDHHC1	NM_013304	exon8	c.G871C	p.A291P	CCTTGGCCTCCTG	.	92.0	74.0	74.0	0.0	.	90
ZNF234	10780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44661606	44661606	+	Silent	SNP	C	C	G	rs182811010	alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_006630	exon6	c.C1437G	p.T479T	CCATACCGGTGAG	.	148.0	42.0	126.0	0.0	C|0.999;T|0.001	.
ZNF335	63925	broad.mit.edu;bcgsc.ca	37	20	44592119	44592119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF335	NM_022095	exon9	c.C1526T	p.S509L	TTGAGCGAGGACC	.	33.0	6.0	28.0	0.0	.	94
ZNF777	27153	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149152476	149152476	+	Missense_Mutation	SNP	G	G	A	rs201407206		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF777	NM_015694	exon2	c.C638T	p.T213M	GTCCCCGTCCTGC	.	161.0	61.0	167.0	1.0	G|0.999;A|0.001	136
ZNF800	168850	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127013575	127013575	+	Silent	SNP	G	G	T	rs76411607	byfrequency;alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF800	NM_176814	exon5	c.C1815A	p.V605V	AATACCGACGTCA	.	248.0	85.0	327.0	2.0	G|0.982;A|0.018	23
MICAL3	57553	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18385513	18385514	+	Splice_Site	DNP	CC	CC	AA	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	CC	CC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	CGGATACCTGGGA	.	120.0	59.0	123.0	2.0	.	.