Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABHD3	171586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	19263896	19263896	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ABHD3	NM_138340	exon4	c.G540A	p.A180A	CTCCCCCGCCACT	.	193.0	46.0	189.0	0.0	.	90
ACAN	176	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	89417182	89417182	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ACAN	NM_013227	exon17	c.C7443A	p.V2481V	GTTTGTCCAGCGC	.	95.0	9.0	107.0	0.0	.	25
ADCYAP1R1	117	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31104532	31104532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ADCYAP1R1	NM_001118	exon3	c.G137T	p.G46V	TGATGGGCTTCAA	.	49.0	5.0	99.0	0.0	.	91
ARFGEF1	10565	broad.mit.edu;bcgsc.ca	37	8	68184028	68184028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ARFGEF1	NM_006421	exon10	c.T1481C	p.V494A	GATGAGACTCCAT	.	142.0	6.0	111.0	0.0	.	294
ARHGAP26	23092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	142435642	142435642	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ARHGAP26	NM_015071	exon16	c.A1423T	p.K475X	TTCATCAAAGCAG	.	51.0	8.0	59.0	0.0	.	660
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152835147	152835147	+	Silent	SNP	C	C	T	rs147874519	byfrequency	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ATP2B3	NM_021949	exon20	c.C3429T	p.D1143D	TCATGACGTAACC	.	191.0	41.0	135.0	0.0	C|1.000;T|0.000	109
ATP6V0D2	245972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87165053	87165053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ATP6V0D2	NM_152565	exon8	c.G900T	p.M300I	ACAAATGAATGTG	.	64.0	21.0	84.0	0.0	.	90
BDNF	627	ucsc.edu;mdanderson.org	37	11	27681097	27681097	+	RNA	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	BDNF	.	.	.	.	AACCCTTCACTCC	.	259.0	78.0	237.0	0.0	.	514
BRF1	2972	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105693005	105693005	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	BRF1	NM_001519	exon8	c.A881G	p.Y294C	GCTGTGTACGAGG	.	102.0	29.0	88.0	1.0	.	155
C11orf87	399947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	109294862	109294862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	C11orf87	NM_207645	exon2	c.C503A	p.P168Q	CTCCACCGCCAGC	.	64.0	19.0	71.0	0.0	.	92
C14orf166B	145497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77311222	77311222	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_194287	exon7	c.G705A	p.G235G	AGGAGGGGAGCAC	.	51.0	17.0	67.0	0.0	.	.
C2CD4C	126567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	407975	407975	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	C2CD4C	NM_001136263	exon2	c.C387T	p.D129D	CTGGGGGTCGGCG	.	125.0	27.0	121.0	0.0	.	46
CAMTA1	23261	ucsc.edu;bcgsc.ca	37	1	6880251	6880251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CAMTA1	NM_015215	exon2	c.A56G	p.Q19R	TTTCCCAAAGTGT	.	47.0	5.0	70.0	0.0	.	520
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	65038624	65038624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CDH11	NM_001797	exon3	c.G149A	p.R50H	TTGGAGCGCTGTA	.	95.0	19.0	109.0	0.0	.	852
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	65038770	65038770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CDH11	NM_001797	exon3	c.G3T	p.M1I	CTCCTTCATTTTT	.	133.0	31.0	178.0	0.0	.	852
CEP170	9859	broad.mit.edu;bcgsc.ca	37	1	243291604	243291604	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CEP170	NM_001042405	exon19	c.4042-2A>T	.	ATCTCCTGCAGGG	.	270.0	34.0	420.0	1.0	.	93
CEP170	9859	broad.mit.edu;bcgsc.ca	37	1	243328135	243328135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CEP170	NM_014812	exon13	c.G3127A	p.D1043N	CTTGATCAGATGA	.	328.0	26.0	446.0	1.0	.	93
CEP192	55125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	13049219	13049219	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CEP192	NM_032142	exon16	c.A2429T	p.D810V	CTTGGGATTTATC	.	80.0	11.0	72.0	0.0	.	27
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	117243675	117243675	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CFTR	NM_000492	exon17	c.T2747A	p.F916Y	ATGTGTTTTACAT	.	118.0	11.0	243.0	0.0	.	518
CHRNB2	1141	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154543762	154543762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CHRNB2	NM_000748	exon5	c.T463C	p.C155R	AGCGCATGCAAGA	.	88.0	11.0	101.0	0.0	.	90
CHRNB3	1142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42587427	42587427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CHRNB3	NM_000749	exon5	c.C977T	p.S326F	CTTCTTCCACGTA	.	438.0	176.0	300.0	0.0	.	91
CNGB3	54714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87755800	87755800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CNGB3	NM_019098	exon1	c.A56T	p.E19V	TCATTCTCATTGT	.	285.0	120.0	397.0	0.0	.	93
CNN3	1266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	95364951	95364951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CNN3	NM_001839	exon6	c.G624A	p.M208I	AGTGCCCATCTGC	.	67.0	15.0	128.0	0.0	.	90
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125555776	125555776	+	Silent	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CNTNAP5	NM_130773	exon19	c.A3093T	p.T1031T	TTACACAGATTCA	.	199.0	53.0	243.0	0.0	.	524
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32158742	32158742	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	COL16A1	NM_001856	exon13	c.A1022T	p.E341V	CCCCGCTCACCTT	.	113.0	18.0	125.0	0.0	.	98
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94057038	94057038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	COL1A2	NM_000089	exon49	c.C3367A	p.R1123S	CAGCCTCGCTCAG	.	87.0	26.0	123.0	0.0	.	521
CRISPLD1	83690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75932132	75932132	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CRISPLD1	NM_031461	exon11	c.A1155G	p.T385T	CTTCACAGTCTCT	.	165.0	56.0	211.0	0.0	.	91
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2799992	2799992	+	Splice_Site	SNP	A	A	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CSMD1	NM_033225	exon70	c.10535+2T>G	.	TGCAGTACCTGTG	.	41.0	23.0	51.0	0.0	.	86
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3443701	3443701	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CSMD1	NM_033225	exon9	c.A1179G	p.T393T	CGTCTCTGTAACT	.	75.0	21.0	79.0	0.0	.	86
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34498286	34498286	+	Silent	SNP	T	T	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CSMD2	NM_052896	exon3	c.A306C	p.P102P	GGTGGCTGGCAGC	.	93.0	12.0	83.0	0.0	.	103
CTTNBP2	83992	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117432446	117432446	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CTTNBP2	NM_033427	exon4	c.A804C	p.Q268H	TTTCAGTTGCTCA	.	267.0	41.0	276.0	1.0	.	94
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117432538	117432538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CTTNBP2	NM_033427	exon4	c.C712T	p.R238W	GTTCCCGCTCAGT	.	232.0	28.0	232.0	0.0	.	94
CYTH1	9267	broad.mit.edu;bcgsc.ca	37	17	76698670	76698670	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CYTH1	NM_017456	exon4	c.A187G	p.N63D	GTTTGTTCCTCTG	.	146.0	6.0	136.0	0.0	.	228
DAB2IP	153090	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	124535287	124535287	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DAB2IP	NM_032552	exon12	c.C2396G	p.S799C	CGCTCTCCTTCCA	.	98.0	28.0	148.0	0.0	.	91
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	51025767	51025767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DCC	NM_005215	exon27	c.C3998T	p.T1333I	TCCCCACAGCTTG	.	84.0	9.0	171.0	0.0	.	225
DCLRE1B	64858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114454510	114454510	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DCLRE1B	NM_022836	exon4	c.A1296G	p.S432S	ATTTTCAGTGCAC	.	102.0	18.0	117.0	0.0	.	227
DDR2	4921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162688873	162688873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DDR2	NM_001014796	exon4	c.T20C	p.M7T	CCAGAATGCTCTT	.	64.0	15.0	118.0	0.0	.	1464
DIAPH3	81624	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	60413570	60413570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DIAPH3	NM_001042517	exon23	c.C2750T	p.T917M	TCCAGCGTTTCTA	.	15.0	3.0	63.0	0.0	.	516
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124377713	124377713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DMBT1	NM_007329	exon38	c.C4685A	p.A1562D	GAAATGCCCAGTT	.	66.0	20.0	100.0	0.0	.	494
DNAAF3	352909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55670500	55670500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001256714	exon12	c.A1757G	p.E586G	AGAACCTCTGAGA	.	133.0	31.0	168.0	0.0	.	.
DNAH12	201625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57431862	57431862	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DNAH12	NM_178504	exon27	c.T4006G	p.F1336V	AAACAAACACAAC	.	182.0	43.0	214.0	1.0	.	47
DSCR3	10311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38597864	38597864	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DSCR3	NM_006052	exon8	c.T875A	p.L292Q	AGCTTCAGCGGGA	.	106.0	20.0	120.0	0.0	.	90
DUOX2	50506	broad.mit.edu;bcgsc.ca	37	15	45393403	45393403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DUOX2	NM_014080	exon22	c.G2921A	p.R974H	GCTCACCGCTCCC	.	105.0	7.0	133.0	1.0	.	95
EPB41L4A	64097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	111600669	111600669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	EPB41L4A	NM_022140	exon6	c.G478T	p.V160L	CAGATACATATCC	.	85.0	13.0	75.0	0.0	.	91
ERCC1	2067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45924624	45924624	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ERCC1	NM_001983	exon3	c.A133G	p.S45G	GAAGGCTCTGTGT	.	74.0	10.0	74.0	0.0	.	659
EXO5	64789	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	40980542	40980542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_022774	exon3	c.A326G	p.E109G	CACCTGAGAAGGC	.	58.0	6.0	73.0	0.0	.	.
EXOC3	11336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	464493	464493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	EXOC3	NM_007277	exon10	c.A1742G	p.N581S	ATTTCAACGATTT	.	74.0	7.0	85.0	0.0	.	90
FNDC7	163479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109273448	109273448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FNDC7	NM_001144937	exon9	c.C1777T	p.L593F	CACTGCCTCCTAG	.	98.0	18.0	106.0	0.0	.	92
FOLR4	390243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94040391	94040391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FOLR4	NM_001199206	exon3	c.G409A	p.E137K	GACTGTGAGGAGT	.	112.0	12.0	162.0	0.0	.	23
FOXL1	2300	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	86612389	86612389	+	Silent	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FOXL1	NM_005250	exon1	c.G60C	p.L20L	GTATCTGTACGGT	.	96.0	11.0	115.0	0.0	.	227
FOXRED2	80020	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36892113	36892113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FOXRED2	NM_001102371	exon7	c.G1525T	p.D509Y	AGACGTCCTTGTC	.	126.0	16.0	166.0	1.0	.	92
FPR1	2357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52249985	52249985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FPR1	NM_001193306	exon3	c.G263T	p.G88V	TGTCCTCCCATGG	.	183.0	35.0	204.0	0.0	.	524
GALR1	2587	broad.mit.edu;mdanderson.org	37	18	74962595	74962595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GALR1	NM_001480	exon1	c.G91A	p.V31M	ATCGGCGTGGAGA	.	40.0	7.0	44.0	0.0	.	522
GDF2	2658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48413759	48413759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GDF2	NM_016204	exon2	c.C1109T	p.P370L	TTCGTCGGCGTCA	.	141.0	18.0	162.0	0.0	.	229
GLG1	2734	ucsc.edu;bcgsc.ca	37	16	74496078	74496078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GLG1	NM_001145667	exon22	c.T2950C	p.C984R	CTTCACAGTCTGA	.	40.0	4.0	55.0	0.0	.	136
GLTSCR2	29997	broad.mit.edu;bcgsc.ca	37	19	48257974	48257974	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GLTSCR2	NM_015710	exon8	c.A879G	p.T293T	GTCCACATTCCAG	.	97.0	7.0	94.0	0.0	.	514
GOLGA3	2802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133384623	133384623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GOLGA3	NM_001172557	exon5	c.G1032T	p.M344I	GTTGACCATATAG	.	103.0	30.0	124.0	0.0	.	95
GPATCH8	23131	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42475028	42475028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GPATCH8	NM_001002909	exon8	c.G4417T	p.A1473S	CTGCTGCAGCAGG	.	152.0	30.0	225.0	1.0	.	94
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25861801	25861801	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GPR158	NM_020752	exon7	c.T1738A	p.Y580N	TGGGACTACATGA	.	102.0	17.0	201.0	0.0	.	141
GRAMD3	65983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	125821443	125821443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GRAMD3	NM_001146319	exon11	c.A1081G	p.I361V	CACCATATTCTTA	.	39.0	6.0	52.0	0.0	.	90
GRM4	2914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	34029743	34029743	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GRM4	NM_001256811	exon4	c.A799T	p.K267X	TGATCTTGTCGAA	.	170.0	55.0	214.0	0.0	.	525
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	121432040	121432040	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	HNF1A,NS,other,0	HNF1A	NM_000545	exon4	c.C787G	p.R263G	GAGGTGCGTGTCT	.	61.0	5.0	111.0	0.0	.	1745
HNRNPCL1	343069	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	12907411	12907411	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	HNRNPCL1	NM_001013631	exon2	c.A732G	p.A244A	GTCTTCTGCACCC	.	198.0	15.0	316.0	1.0	.	68
HNRNPD	3184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	83278019	83278020	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	HNRNPD	NM_002138	exon6	c.783_784insG	p.E261fs	ATATTGTTCCTTC	.	132.0	23.0	175.0	0.0	.	22
HSPA12A	259217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118458224	118458224	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	HSPA12A	NM_025015	exon5	c.G468T	p.T156T	TGCTGCCGTCAGG	.	89.0	28.0	124.0	0.0	.	206
HSPA4	3308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132400692	132400692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	HSPA4	NM_002154	exon2	c.C128T	p.P43L	TTGGTCCTAAGAA	.	209.0	32.0	183.0	0.0	.	226
INTS1	26173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	1529320	1529320	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001080453	exon18	c.2166-2A>T	.	GGTACCTGGAAGG	.	65.0	9.0	79.0	0.0	.	.
IWS1	55677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	128247424	128247424	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	IWS1	NM_017969	exon11	c.C2143T	p.R715X	TTCGTCGTTGAGG	.	267.0	41.0	348.0	0.0	.	91
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	139791731	139791731	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	JHDM1D	NM_030647	exon19	c.G2604A	p.A868A	CTGGCACGCCCCC	.	181.0	9.0	201.0	0.0	.	91
KCNA7	3743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49574011	49574011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KCNA7	NM_031886	exon2	c.G680T	p.R227L	AGGAGGCGTACCA	.	67.0	20.0	83.0	0.0	.	90
KCNQ4	9132	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	41304173	41304173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KCNQ4	NM_004700	exon14	c.C2066T	p.S689L	CCCGCTCGGTCAG	.	313.0	32.0	321.0	2.0	.	90
KDR	3791	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	55946222	55946222	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KDR	NM_002253	exon30	c.C3957A	p.Y1319X	ACTGGAGTACACG	.	162.0	51.0	206.0	1.0	.	2298
KIAA0922	23240	broad.mit.edu;bcgsc.ca	37	4	154557488	154557488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIAA0922	NM_001131007	exon35	c.G4593A	p.M1531I	TCCAATGTCTGGA	.	105.0	6.0	123.0	0.0	.	92
KIAA1328	57536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34646878	34646878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIAA1328	NM_020776	exon7	c.A602G	p.Q201R	CTCTCCAGTGTTC	.	142.0	33.0	166.0	0.0	.	90
KIF11	3832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94369152	94369152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIF11	NM_004523	exon6	c.T584C	p.I195T	GAGTGATAATTAA	.	60.0	9.0	91.0	0.0	.	227
KIF22	3835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29811026	29811026	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIF22	NM_007317	exon7	c.C1068T	p.V356V	CACAGTCTCCGCA	.	124.0	22.0	225.0	0.0	.	68
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	104642658	104642658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIF26A	NM_015656	exon12	c.G3533T	p.G1178V	GCCCTGGGGAAGT	.	107.0	34.0	83.0	0.0	.	24
KLC3	147700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45853937	45853937	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KLC3	NM_177417	exon11	c.G1311A	p.E437E	CCGTGAGTCTATC	.	159.0	37.0	184.0	0.0	.	91
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	7023225	7023225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LAMA1	NM_005559	exon19	c.C2639A	p.A880D	CAGTGGGCGCCAT	.	119.0	10.0	122.0	0.0	.	149
LAMTOR3	8649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100808468	100808468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LAMTOR3	NM_021970	exon4	c.G88T	p.V30L	CAGGTACTCCATC	.	143.0	42.0	214.0	0.0	.	658
LHX5	64211	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	113901064	113901064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LHX5	NM_022363	exon5	c.C1140A	p.S380R	GGTGCCGCTCATT	.	34.0	14.0	20.0	0.0	.	90
LMTK2	22853	broad.mit.edu;bcgsc.ca	37	7	97822981	97822981	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LMTK2	NM_014916	exon11	c.T3204C	p.P1068P	TCTGCCTCCCAAC	.	61.0	5.0	62.0	0.0	.	1381
LRRC71	149499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156901780	156901780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LRRC71	NM_144702	exon13	c.A1402G	p.M468V	GTTTTCATGCCTG	.	187.0	16.0	210.0	0.0	.	91
LRWD1	222229	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	102113247	102113247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LRWD1	NM_152892	exon14	c.C1799T	p.T600I	CCCCCACACAGGT	.	141.0	6.0	110.0	0.0	.	69
LYPD3	27076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43969676	43969676	+	Silent	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LYPD3	NM_014400	exon1	c.A48T	p.A16A	CCAGCCTGCAGTC	.	56.0	12.0	64.0	0.0	.	91
MAGEC2	51438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	141291370	141291370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MAGEC2	NM_016249	exon3	c.C404T	p.S135F	AAAGAGGACTCAC	.	35.0	16.0	38.0	0.0	.	193
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71491475	71491475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MAP1B	NM_005909	exon5	c.T2293C	p.S765P	GAAGAGTCTGTCA	.	82.0	12.0	116.0	0.0	.	155
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135314089	135314089	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MAP7D3	NM_024597	exon8	c.G1027C	p.V343L	CGTCCACGCTCAC	.	101.0	55.0	114.0	0.0	.	110
MAPK9	5601	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179674507	179674507	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MAPK9	NM_002752	exon7	c.A620C	p.D207A	CAGATATCAACTG	.	48.0	5.0	64.0	0.0	.	1402
MATN4	8785	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43933399	43933399	+	Missense_Mutation	SNP	C	C	T	rs114313957	byfrequency;alternate_allele	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MATN4	NM_030592	exon3	c.G112A	p.V38M	CAATCACGAACAC	.	116.0	28.0	88.0	0.0	C|0.987;G|0.013	90
MEGF6	1953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3425655	3425655	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MEGF6	NM_001409	exon12	c.G1512A	p.T504T	TGTGAGCGTGTGT	.	138.0	41.0	114.0	0.0	.	90
MFSD4	148808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	205568282	205568282	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MFSD4	NM_181644	exon9	c.T1392C	p.Y464Y	CAGCTATAGTTTC	.	317.0	73.0	369.0	0.0	.	92
MGLL	11343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	127413989	127413989	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MGLL	NM_007283	exon7	c.G645A	p.L215L	CACCTTCAGCCCT	.	165.0	36.0	232.0	0.0	.	90
MIPEP	4285	broad.mit.edu;bcgsc.ca	37	13	24384001	24384001	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MIPEP	NM_005932	exon15	c.T1716C	p.D572D	TTGCATATCAGCT	.	66.0	6.0	57.0	0.0	.	90
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	151970873	151970873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MLL3	NM_170606	exon7	c.G929T	p.C310F	GCAGCACAAGGAT	.	394.0	18.0	472.0	0.0	.	1398
MMAA	166785	broad.mit.edu;bcgsc.ca	37	4	146575235	146575235	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MMAA	NM_172250	exon6	c.A909G	p.Q303Q	GATACAAGCGGAA	.	110.0	6.0	121.0	0.0	.	91
MRGPRX1	259249	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18955787	18955787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MRGPRX1	NM_147199	exon1	c.C545T	p.A182V	AGCCACGCGACTG	.	79.0	11.0	92.0	1.0	.	92
MTFR2	113115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	136562631	136562631	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_138419	exon5	c.G465C	p.Q155H	TGCAATCTGAGAG	.	149.0	10.0	155.0	0.0	.	.
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9011461	9011461	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	ENSG00000232861,NS,carcinoma,-2	MUC16	NM_024690	exon36	c.T38772C	p.D12924D	GATGGCATCCATT	.	154.0	12.0	241.0	0.0	.	566
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	10432947	10432947	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MYH2	NM_017534	exon24	c.G3051A	p.Q1017Q	CTCTGCCTGCAGG	.	362.0	166.0	335.0	0.0	.	194
MYO1B	4430	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	192160940	192160940	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MYO1B	NM_012223	exon3	c.T239G	p.L80R	ATGAACTGAGCCC	.	82.0	21.0	101.0	1.0	.	238
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171259467	171259467	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MYO3B	NM_001083615	exon19	c.C2239G	p.Q747E	CAAATCCAGTACT	.	102.0	16.0	126.0	0.0	.	530
NDC80	10403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2610833	2610833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NDC80	NM_006101	exon16	c.G1764A	p.M588I	AGAGATGGTTGCT	.	174.0	22.0	213.0	0.0	.	91
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150708074	150708074	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NOS3	NM_000603	exon23	c.G2984C	p.G995A	TCCGGGGGTAAGT	.	48.0	10.0	78.0	0.0	.	1011
NRXN3	9369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	79269978	79269978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NRXN3	NM_004796	exon6	c.G941A	p.S314N	TCCTGAGCTATGA	.	107.0	27.0	130.0	0.0	.	587
NSRP1	84081	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	28511699	28511699	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NSRP1	NM_032141	exon7	c.A684G	p.P228P	AATACCACAAGAG	.	280.0	15.0	145.0	0.0	.	91
NUP210	23225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	13383318	13383318	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NUP210	NM_024923	exon23	c.A3158T	p.Q1053L	CTGGTCTGGCCGA	.	193.0	57.0	217.0	0.0	.	256
OR5D18	219438	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587762	55587762	+	Silent	SNP	T	T	C	rs116682108	byfrequency	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	OR5D18	NM_001001952	exon1	c.T657C	p.Y219Y	ATCTTATGCGTTC	.	166.0	24.0	219.0	0.0	T|0.997;C|0.003	71
OSBPL7	114881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45885990	45885990	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	OSBPL7	NM_145798	exon22	c.C2334T	p.A778A	CTTCTGGGCCTCA	.	237.0	33.0	305.0	0.0	.	68
PARD3	56288	broad.mit.edu;bcgsc.ca	37	10	34690758	34690758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PARD3	NM_001184788	exon6	c.C802G	p.L268V	ACTCCAGAGAAAA	.	50.0	5.0	78.0	0.0	.	92
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	4966401	4966401	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_032972	exon2	c.G782C	p.R261T	CTCAAAGATCCAG	.	162.0	21.0	284.0	0.0	.	.
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55568668	55568668	+	Silent	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PCDH15	.	.	.	.	ATCTTGAGCTTCA	.	212.0	51.0	261.0	0.0	.	193
PCDH19	57526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99551540	99551540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PCDH19	NM_001184880	exon6	c.C3182A	p.A1061E	CTAATCGCCTCAC	.	46.0	22.0	65.0	0.0	.	110
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140798233	140798233	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PCDHGB7	NM_018927	exon1	c.G807A	p.Q269Q	TGACCAGGACGAG	.	41.0	5.0	37.0	0.0	.	29
PDCD1LG2	80380	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5549465	5549465	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PDCD1LG2	NM_025239	exon4	c.C492A	p.T164T	CAACACCAGCCAC	.	74.0	22.0	164.0	1.0	.	227
PDCD6	10016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	306821	306821	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PDCD6	NM_013232	exon4	c.G313C	p.D105H	GACCGGGACAACT	.	220.0	30.0	184.0	0.0	.	290
PHF20	51230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34515736	34515736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PHF20	NM_016436	exon14	c.G2039T	p.C680F	GGGTCTGCATGGG	.	139.0	50.0	120.0	0.0	.	515
PMP2	5375	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	82357106	82357106	+	Silent	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PMP2	NM_002677	exon2	c.C192G	p.S64S	CTTGAAGGAGATT	.	104.0	13.0	117.0	0.0	.	90
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121179064	121179064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	POLQ	NM_199420	exon25	c.G6985T	p.A2329S	AGTCAGCAGCCAG	.	155.0	24.0	159.0	0.0	.	664
PRSS35	167681	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	84233541	84233541	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PRSS35	NM_153362	exon2	c.C381A	p.T127T	TGGCACCGACAGC	.	157.0	10.0	210.0	0.0	.	91
PRSS3	5646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33796749	33796749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PRSS3	NM_007343	exon2	c.G320A	p.G107D	GCGGTGGCTCCCT	.	174.0	21.0	229.0	0.0	.	90
PSMC4	5704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40485836	40485836	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PSMC4	NM_006503	exon7	c.C786G	p.I262M	CATCATCTTCATA	.	161.0	34.0	188.0	0.0	.	91
PTAR1	375743	ucsc.edu;bcgsc.ca	37	9	72347125	72347125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PTAR1	NM_001099666	exon5	c.A572G	p.Y191C	CTTGGGTATCTCC	.	45.0	4.0	101.0	0.0	.	69
PTPRH	5794	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55715293	55715293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PTPRH	NM_002842	exon5	c.A743G	p.D248G	CCACCATCTCCAG	.	148.0	31.0	165.0	1.0	.	138
RANBP2	5903	ucsc.edu;bcgsc.ca	37	2	109380631	109380631	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	RANBP2	NM_006267	exon20	c.A3636G	p.K1212K	ATGGAAAGAACGT	.	35.0	4.0	72.0	0.0	.	675
RBM14	10432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66384504	66384504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	RBM14	NM_001198837	exon1	c.G313T	p.V105F	GGACGCGTCATCG	.	76.0	9.0	73.0	0.0	.	92
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	38991632	38991632	+	Silent	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SCN11A	NM_014139	exon1	c.A222T	p.I74I	CTTTCCTATGAGC	.	152.0	26.0	170.0	0.0	.	99
SCN5A	6331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38645542	38645542	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SCN5A	NM_001160160	exon12	c.G1551A	p.R517R	AGAAGTCCTGCTG	.	107.0	16.0	101.0	0.0	.	98
SEMA6B	10501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4550257	4550257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SEMA6B	NM_032108	exon12	c.G1149A	p.M383I	GTACTGCATCCCG	.	107.0	26.0	138.0	0.0	.	91
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49135766	49135766	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SHC4	NM_203349	exon10	c.G1323A	p.G441G	CTGCACCCCTCTT	.	186.0	57.0	183.0	0.0	.	95
SLC12A1	6557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48500027	48500027	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SLC12A1	NM_001184832	exon2	c.T111A	p.D37E	TGCAGATGACAAT	.	83.0	25.0	120.0	0.0	.	24
SLC13A4	26266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135377154	135377154	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SLC13A4	NM_012450	exon11	c.T1137C	p.T379T	AAATCCAGTCACC	.	81.0	17.0	86.0	0.0	.	90
SLC16A6	9120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66267772	66267772	+	Missense_Mutation	SNP	T	T	C	rs139961659		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SLC16A6	NM_001174166	exon6	c.A529G	p.I177V	AGCCAATGCGCTC	.	95.0	19.0	93.0	0.0	T|1.000;C|0.000	90
SLC6A20	54716	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45823619	45823619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SLC6A20	NM_022405	exon2	c.G218A	p.S73N	CCGATGCTGCCCT	.	108.0	33.0	151.0	1.0	.	92
SNAP25	6616	ucsc.edu;bcgsc.ca	37	20	10273575	10273575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SNAP25	NM_003081	exon5	c.A209G	p.D70G	ACCAAGACATGAA	.	39.0	4.0	61.0	0.0	.	92
SNTB1	6641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	121644855	121644855	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SNTB1	NM_021021	exon3	c.G825A	p.T275T	GATCACCGTGTGC	.	96.0	5.0	131.0	0.0	.	228
SORCS1	114815	broad.mit.edu;bcgsc.ca	37	10	108389095	108389095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SORCS1	NM_001206572	exon19	c.G2527A	p.V843M	AAGACACCGCGAT	.	89.0	7.0	113.0	1.0	.	153
SSTR3	6753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37602722	37602722	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SSTR3	NM_001051	exon2	c.T1121A	p.V374D	TGGCTGACCCGGC	.	58.0	16.0	89.0	0.0	.	522
STK33	65975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8496345	8496345	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	STK33	NM_030906	exon3	c.A108G	p.P36P	CAAAACTGGAGGA	.	92.0	21.0	140.0	0.0	.	337
SYT8	90019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1858034	1858034	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SYT8	NM_138567	exon7	c.T775A	p.S259T	CCCAGCTCAGGCC	.	94.0	11.0	107.0	0.0	.	91
TDRD1	56165	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115986999	115986999	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TDRD1	NM_198795	exon23	c.T3344G	p.L1115R	ATAAGCTAGTGAC	.	192.0	66.0	237.0	1.0	.	90
TET2	54790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	106155167	106155168	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TET2	NM_017628	exon3	c.68_69insT	p.P23fs	CACCTCCCATTTG	.	47.0	11.0	89.0	0.0	.	4618
TET2	54790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	106155168	106155169	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TET2	NM_017628	exon3	c.69_70insCA	p.P23fs	ACCTCCCATTTGC	.	48.0	11.0	92.0	0.0	.	4618
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76113656	76113656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TMC6	NM_001127198	exon17	c.G2091T	p.W697C	GCGCACCCACACC	.	67.0	20.0	86.0	0.0	.	90
TMEM185A	84548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148693147	148693147	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TMEM185A	NM_032508	exon3	c.39-1G>T	.	AATTTACTAGGAG	.	56.0	32.0	60.0	0.0	.	131
TMEM260	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	57083958	57083958	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_017799	exon9	c.A999G	p.S333S	TTATTCATTGTTC	.	95.0	10.0	90.0	0.0	.	.
TNNT3	7140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1955638	1955638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TNNT3	NM_006757	exon12	c.C443T	p.S148F	CTCTGTCTTCCAT	.	92.0	14.0	82.0	0.0	.	91
TNPO2	30000	ucsc.edu;bcgsc.ca	37	19	12831732	12831732	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TNPO2	NM_013433	exon2	c.A60G	p.S20S	CGACTGTGAGTCT	.	38.0	4.0	58.0	0.0	.	227
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	203.0	103.0	211.0	0.0	C|1.000;|0.000	70225
TRIM24	8805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	138239638	138239638	+	Missense_Mutation	SNP	G	G	A	rs201288398	alternate_allele	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TRIM24	NM_015905	exon9	c.G1457A	p.R486Q	TGCAACGGAGGCC	.	129.0	11.0	244.0	0.0	G|0.999;T|0.001	1030
TRIM4	89122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99490170	99490171	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TRIM4	NM_033017	exon7	c.1119_1120insA	p.N373fs	GAAAACGTTTTTT	.	137.0	16.0	139.0	0.0	.	227
TRIM58	25893	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248039390	248039390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TRIM58	NM_015431	exon6	c.G1060A	p.E354K	GTGGGAGAAGGAG	.	193.0	11.0	206.0	0.0	.	96
U2AF1L4	199746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36236067	36236067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	U2AF1L4	NM_144987	exon2	c.G91A	p.D31N	ACCGGTCCCCGTG	.	56.0	19.0	78.0	0.0	.	90
UBE2Q2	92912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	76165791	76165791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	UBE2Q2	NM_173469	exon5	c.A470G	p.Y157C	ATCACTATGAGAT	.	130.0	20.0	183.0	0.0	.	70
UBE3A	7337	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	25616256	25616256	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	UBE3A	NM_000462	exon7	c.T1074C	p.S358S	ATTTCGACTGTTA	.	125.0	19.0	132.0	1.0	.	660
UCHL3	7347	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	76140947	76140947	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	UCHL3	NM_006002	exon4	c.G300A	p.L100L	TGGACTGATTCAT	.	54.0	8.0	102.0	0.0	.	522
UNC13C	440279	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	54306041	54306041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	UNC13C	NM_001080534	exon1	c.A941G	p.H314R	TAGGTCATATGGG	.	51.0	7.0	83.0	0.0	.	51
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210699734	210699734	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	UNC80	NM_032504	exon18	c.A3041T	p.H1014L	CAGAGCAGTAAGT	.	19.0	6.0	62.0	0.0	.	90
USP9X	8239	broad.mit.edu;bcgsc.ca	37	X	41012219	41012219	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	USP9X	NM_001039591	exon14	c.C1782T	p.P594P	AAGTCCCCATGTG	.	67.0	5.0	55.0	0.0	.	563
VTA1	51534	broad.mit.edu;bcgsc.ca	37	6	142487370	142487370	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	VTA1	NM_016485	exon2	c.T118C	p.L40L	GGTCGTTTATACG	.	126.0	7.0	154.0	0.0	.	90
WBP11	51729	broad.mit.edu;bcgsc.ca	37	12	14953690	14953690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	WBP11	NM_016312	exon3	c.A92G	p.K31R	ACCTTCTTTAATT	.	75.0	6.0	141.0	0.0	.	92
WDR49	151790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167277892	167277892	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	WDR49	NM_178824	exon5	c.A611T	p.E204V	CGAGTCTCATTTG	.	152.0	44.0	222.0	0.0	.	155
WWP2	11060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69959360	69959360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	WWP2	NM_001270454	exon11	c.C1207T	p.P403S	CATGATCCCCTGG	.	157.0	40.0	129.0	0.0	.	658
XIRP2	129446	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	168099492	168099492	+	Missense_Mutation	SNP	C	C	G	rs112137897		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	XIRP2	NM_152381	exon9	c.C1590G	p.N530K	AATGAACTCAGGG	.	43.0	5.0	77.0	0.0	C|0.500;G|0.500	104
YTHDC2	64848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112899131	112899131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	YTHDC2	NM_022828	exon19	c.T2384C	p.M795T	TTCTTATGAAAGC	.	124.0	17.0	104.0	0.0	.	92
ZC3H4	23211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47569634	47569634	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZC3H4	NM_015168	exon15	c.G3891T	p.T1297T	GGAGGCCGTGGGG	.	64.0	12.0	73.0	0.0	.	74
ZCCHC12	170261	broad.mit.edu;bcgsc.ca	37	X	117960058	117960058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZCCHC12	NM_173798	exon4	c.A851G	p.D284G	CTCAGGACCCTCC	.	136.0	6.0	98.0	0.0	.	131
ZHX1	11244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124266621	124266621	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZHX1	NM_007222	exon3	c.A1566G	p.S522S	ACTCTTTGAATTT	.	54.0	20.0	100.0	0.0	.	91
ZNF14	7561	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19822650	19822650	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF14	NM_021030	exon4	c.T1440C	p.C480C	TTTTCCACACTGT	.	48.0	10.0	69.0	0.0	.	517
ZNF496	84838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	247464447	247464447	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF496	NM_032752	exon9	c.G1138T	p.E380X	GCTTCTCTGTGGG	.	154.0	47.0	190.0	0.0	.	91
ZNF585B	92285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37676268	37676268	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF585B	NM_152279	exon5	c.G2171C	p.G724A	GCCTTCCCACACT	.	311.0	73.0	332.0	1.0	.	91
ZNF675	171392	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23836584	23836584	+	Missense_Mutation	SNP	G	G	A	rs200866824	alternate_allele	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF675	NM_138330	exon4	c.C1151T	p.T384M	TGTTCCGTAAGAT	.	33.0	8.0	27.0	0.0	G|0.999;C|0.001	228
ZNF709	163051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12575313	12575313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF709	NM_152601	exon4	c.C1423T	p.P475S	CATAGGGTTTCTC	.	42.0	8.0	51.0	0.0	.	90
ZNF749	388567	broad.mit.edu;bcgsc.ca	37	19	57955019	57955019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001023561	exon3	c.T503C	p.L168P	ACCTTCTCCAGCA	.	130.0	6.0	131.0	1.0	.	.
ZNF878	729747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12155914	12155914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001080404	exon4	c.C302T	p.S101L	TCATATGATTGTA	.	124.0	31.0	142.0	0.0	.	.