Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ACADM 34 hgsc.bcm.edu;bcgsc.ca 37 1 76216192 76216192 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ACADM NM_001127328 exon10 c.T918C p.Y306Y CAAGTATGCCCTG . 86.0 4.0 75.0 0.0 . 155 AKAP4 8852 hgsc.bcm.edu;bcgsc.ca 37 X 49958534 49958534 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . AKAP4 NM_003886 exon5 c.A830G p.E277G ACAGCTTCATAGG . 65.0 4.0 46.0 0.0 . 540 AKAP8 10270 hgsc.bcm.edu;bcgsc.ca 37 19 15484733 15484733 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . AKAP8 NM_005858 exon4 c.T235C p.S79P CGTAAGAGGCCAT . 97.0 5.0 104.0 0.0 . 290 ANKRD11 29123 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 89341222 89341227 + In_Frame_Del DEL CTGGCT CTGGCT - novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 CTGGCT CTGGCT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ANKRD11 NM_001256183 exon11 c.7708_7713del p.2570_2571del CCCTACCTGGCTC . 70.0 18.0 90.0 0.0 . 139 ANO4 121601 hgsc.bcm.edu;bcgsc.ca 37 12 101333217 101333217 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ANO4 NM_178826 exon3 c.A180G p.E60E ATTGGAAGCCGGG . 63.0 4.0 110.0 0.0 . 96 AP2A2 161 ucsc.edu;bcgsc.ca 37 11 993286 993286 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . AP2A2 NM_001242837 exon12 c.T1458C p.A486A GCAGGCTCTTCAG . 30.0 4.0 57.0 0.0 . 90 ARFIP2 23647 hgsc.bcm.edu;bcgsc.ca 37 11 6501574 6501574 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ARFIP2 NM_012402 exon2 c.T78C p.P26P ATCTTCAGGAAGC . 70.0 4.0 132.0 0.0 . 90 ARHGAP17 55114 hgsc.bcm.edu;bcgsc.ca 37 16 24958829 24958829 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ARHGAP17 NM_001006634 exon14 c.T1215C p.P405P CAAGTTAGGGCCT . 68.0 4.0 64.0 0.0 . 227 ARHGAP36 158763 hgsc.bcm.edu;bcgsc.ca 37 X 130220617 130220617 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ARHGAP36 NM_144967 exon11 c.T1464C p.A488A CCTTGCTCAAAGC . 78.0 4.0 61.0 0.0 . 133 ARID2 196528 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 46246364 46246376 + Frame_Shift_Del DEL TCCCGACTCAGGA TCCCGACTCAGGA - novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 TCCCGACTCAGGA TCCCGACTCAGGA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ARID2 NM_152641 exon15 c.4458_4470del p.1486_1490del AGCAGTTCCCGAC . 81.0 23.0 210.0 0.0 . 100 ASB13 79754 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 5691033 5691033 + Silent SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ASB13 NM_024701 exon4 c.C417T p.V139V GGCCCCGACGTCA . 105.0 61.0 98.0 0.0 . 227 ATAD1 84896 hgsc.bcm.edu;bcgsc.ca 37 10 89544340 89544340 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ATAD1 NM_032810 exon5 c.T470C p.L157P GGCTGAAGGTTAA . 89.0 5.0 108.0 0.0 . 578 ATP13A4 84239 ucsc.edu;bcgsc.ca 37 3 193151700 193151700 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ATP13A4 NM_032279 exon25 c.A2776G p.N926D GGCTGTTTGTCTC . 28.0 4.0 30.0 0.0 . 92 BAHCC1 57597 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 79414423 79414423 + Missense_Mutation SNP T T A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . BAHCC1 . . . . GGCTCATTCTACT . 50.0 13.0 95.0 0.0 . 23 BBS9 27241 hgsc.bcm.edu;bcgsc.ca 37 7 33217138 33217138 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . BBS9 NM_014451 exon5 c.T377C p.M126T AATTGATGTATGA . 70.0 4.0 64.0 0.0 . 230 BCL2 596 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 60795978 60795978 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . BCL2 NM_000633 exon3 c.A600G p.E200E GTACAGTTCCACA . 119.0 42.0 132.0 0.0 . 1271 BRSK1 84446 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 55816894 55816894 + Silent SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . BRSK1 NM_032430 exon16 c.C1830T p.L610L ATTCCTCGTGCTA . 185.0 59.0 182.0 1.0 . 759 C15orf55 256646 hgsc.bcm.edu;bcgsc.ca 37 15 34646648 34646648 + Silent SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . C15orf55 NM_175741 exon5 c.G993A p.V331V CTTAGTGTACATT . 68.0 4.0 160.0 0.0 . 206 C16orf88 400506 hgsc.bcm.edu;bcgsc.ca 37 16 19725915 19725915 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . C16orf88 NM_001012991 exon2 c.T443C p.L148P TTTTTGAGCTTCT . 68.0 4.0 95.0 0.0 . 68 C1QTNF8 390664 hgsc.bcm.edu;bcgsc.ca 37 16 1143730 1143730 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . C1QTNF8 NM_207419 exon4 c.A530G p.E177G TAGGTCTCCTTGT . 70.0 4.0 66.0 0.0 . 91 CAPN10 11132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 241534647 241534647 + Missense_Mutation SNP G G T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CAPN10 NM_023085 exon7 c.G1204T p.D402Y GTGGGTGACAGTC . 293.0 72.0 222.0 0.0 . 656 CARD10 29775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 37902375 37902375 + Missense_Mutation SNP C C A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CARD10 NM_014550 exon7 c.G1207T p.D403Y TCCGGTCACGGCT . 230.0 68.0 207.0 0.0 . 662 CCDC136 64753 hgsc.bcm.edu;bcgsc.ca 37 7 128452197 128452197 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CCDC136 NM_022742 exon13 c.A2372G p.D791G GCTATGACAGCAG . 103.0 5.0 110.0 0.0 . 24 CCDC30 728621 hgsc.bcm.edu;bcgsc.ca 37 1 43076653 43076653 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CCDC30 NM_001080850 exon10 c.T1388C p.V463A AGCATGTCAAAAG . 65.0 4.0 82.0 0.0 . 90 CCDC62 84660 hgsc.bcm.edu;bcgsc.ca 37 12 123285708 123285708 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CCDC62 NM_201435 exon9 c.C1015T p.P339S AACCACCCAAAAG . 81.0 4.0 124.0 0.0 . 157 CCNJ 54619 hgsc.bcm.edu;bcgsc.ca 37 10 97816897 97816897 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CCNJ NM_001134375 exon5 c.T633C p.A211A TGTGGCTTCTTCG . 133.0 6.0 293.0 0.0 . 91 CDH16 1014 hgsc.bcm.edu;bcgsc.ca 37 16 66946026 66946026 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CDH16 NM_004062 exon13 c.A1566G p.A522A TGGAGCTGCCTCA . 75.0 4.0 96.0 0.0 . 93 CDH6 1004 hgsc.bcm.edu;bcgsc.ca 37 5 31305284 31305284 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CDH6 NM_004932 exon7 c.T1003C p.L335L AAGCTCTTGGACT . 54.0 5.0 61.0 0.0 . 159 CENPT 80152 hgsc.bcm.edu;bcgsc.ca 37 16 67864301 67864301 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CENPT NM_025082 exon11 c.A854G p.Q285R TTCTTCTGCAGCC . 94.0 6.0 119.0 0.0 . 90 CIT 11113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 120241020 120241020 + Missense_Mutation SNP C C G rs145965687 alternate_allele TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CIT NM_001206999 exon10 c.G1285C p.G429R ATCTACCAAGAAT . 77.0 53.0 112.0 0.0 C|0.999;T|0.000 399 CNTN3 5067 hgsc.bcm.edu;bcgsc.ca 37 3 74418520 74418520 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CNTN3 NM_020872 exon7 c.A766G p.I256V GAGGTATGGGACT . 81.0 4.0 184.0 0.0 . 137 COL4A4 1286 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 227922184 227922184 + Missense_Mutation SNP G G A rs199562472 TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . COL4A4 NM_000092 exon29 c.C2516T p.P839L AGTCCCGGTTGCC . 75.0 23.0 61.0 1.0 G|0.999;A|0.001 142 CORIN 10699 hgsc.bcm.edu;bcgsc.ca 37 4 47685795 47685795 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CORIN NM_006587 exon7 c.G974A p.C325Y CCATCACACACAA . 67.0 4.0 60.0 0.0 . 91 DAO 1610 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 12 109288138 109288138 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DAO NM_001917 exon7 c.A607G p.M203V CAGATCATGAAGG . 44.0 4.0 83.0 0.0 . 92 DCBLD1 285761 hgsc.bcm.edu;bcgsc.ca 37 6 117861869 117861869 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DCBLD1 NM_173674 exon10 c.A1140G p.Q380Q AGTGCAAAACAAT . 95.0 4.0 131.0 0.0 . 91 DGKI 9162 hgsc.bcm.edu;bcgsc.ca 37 7 137374712 137374712 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DGKI NM_004717 exon2 c.T438C p.A146A TGCAGGAGCCAGA . 87.0 5.0 75.0 0.0 . 228 DLST 1743 hgsc.bcm.edu;bcgsc.ca 37 14 75365074 75365074 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DLST NM_001933 exon11 c.A773G p.N258S ACAGTAACATCCA . 92.0 4.0 140.0 0.0 . 227 DMBX1 127343 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 46976674 46976674 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DMBX1 NM_147192 exon3 c.A416G p.Q139R AGCTCCAGAAGCA . 117.0 43.0 124.0 0.0 . 227 DMXL2 23312 hgsc.bcm.edu;bcgsc.ca 37 15 51748508 51748508 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DMXL2 NM_001174116 exon37 c.A8333G p.Y2778C TTACAGTATTGAT . 99.0 4.0 197.0 0.0 . 99 DNAH7 56171 hgsc.bcm.edu;bcgsc.ca 37 2 196750895 196750895 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DNAH7 NM_018897 exon34 c.A5508G p.R1836R ATCATTTCTCTCC . 100.0 4.0 58.0 0.0 . 102 DSP 1832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 7580098 7580098 + Silent SNP C C G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DSP NM_004415 exon23 c.C3675G p.S1225S GATATCCATGCAA . 91.0 39.0 116.0 0.0 . 518 DYNC2H1 79659 hgsc.bcm.edu;bcgsc.ca 37 11 103018563 103018563 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DYNC2H1 NM_001377 exon19 c.T2765C p.L922P ATGATCTCATCCA . 64.0 4.0 41.0 0.0 . 68 EFEMP1 2202 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 56145028 56145028 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . EFEMP1 NM_001039349 exon4 c.G289A p.A97T TGGTTGCCCCTGA . 199.0 78.0 217.0 0.0 . 520 EIF5 1983 hgsc.bcm.edu;bcgsc.ca 37 14 103803078 103803078 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . EIF5 NM_001969 exon5 c.T219C p.R73R TGACCGTTACATT . 80.0 4.0 97.0 0.0 . 155 EYS 346007 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 6 64498005 64498005 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . EYS NM_001142800 exon39 c.T7716C p.G2572G TTGAAAACCATTT . 56.0 5.0 58.0 0.0 . 660 F10 2159 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 13 113803258 113803258 + Silent SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . F10 NM_000504 exon8 c.C894T p.G298G GGAGGGCGGTGAG . 420.0 26.0 361.0 0.0 . 227 FAM120C 54954 hgsc.bcm.edu;bcgsc.ca 37 X 54162988 54162988 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FAM120C NM_017848 exon5 c.A1194G p.K398K AACTGCTTTCTTG . 75.0 4.0 76.0 0.0 . 131 FAM208A 23272 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 3 56667646 56667646 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . . NM_001112736 exon18 c.T3173C p.M1058T CGTTTCATCTTCT . 26.0 4.0 38.0 0.0 . . FAM3B 54097 hgsc.bcm.edu;bcgsc.ca 37 21 42720630 42720630 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FAM3B NM_058186 exon7 c.T597C p.P199P ACTCCCTTCCGAA . 96.0 4.0 150.0 0.0 . 90 FAM83C 128876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 33874568 33874568 + Missense_Mutation SNP G G A rs138265873 byfrequency TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FAM83C NM_178468 exon4 c.C2014T p.R672W TTAGCCGTTTCTC . 206.0 62.0 222.0 0.0 G|1.000;A|0.000 92 FANK1 92565 hgsc.bcm.edu;bcgsc.ca 37 10 127697829 127697829 + Silent SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FANK1 NM_145235 exon10 c.C966T p.D322D TTTTGACAGACAG . 58.0 5.0 106.0 0.0 . 91 FARP1 10160 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 99038053 99038053 + Silent SNP A A T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FARP1 NM_005766 exon8 c.A744T p.G248G CACGGGAATTCTA . 39.0 20.0 25.0 0.0 . 290 FBXL5 26234 hgsc.bcm.edu;bcgsc.ca 37 4 15629615 15629615 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FBXL5 NM_012161 exon7 c.A934G p.M312V TTTCCATTTGTGC . 82.0 4.0 86.0 0.0 . 226 FIP1L1 81608 hgsc.bcm.edu;bcgsc.ca 37 4 54265931 54265931 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FIP1L1 NM_030917 exon10 c.A740G p.E247G AGAAAGAAACTGC . 87.0 5.0 109.0 0.0 . 1083 FRYL 285527 hgsc.bcm.edu;bcgsc.ca 37 4 48545872 48545872 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FRYL NM_015030 exon44 c.T5544C p.V1848V GGAGAGAACATCA . 90.0 4.0 68.0 0.0 . 69 FYCO1 79443 hgsc.bcm.edu;bcgsc.ca 37 3 46021198 46021198 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FYCO1 NM_024513 exon4 c.A287G p.E96G CTTACCTCTGAGA . 125.0 5.0 210.0 0.0 . 91 GBP5 115362 hgsc.bcm.edu;bcgsc.ca 37 1 89728392 89728392 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GBP5 NM_052942 exon10 c.T1439C p.L480P TCTGTGAGAGCCT . 75.0 4.0 102.0 0.0 . 91 GHDC 84514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 40343211 40343211 + Missense_Mutation SNP G G C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GHDC NM_001142623 exon6 c.C907G p.L303V GCTGTAGGTTTAG . 72.0 34.0 71.0 0.0 . 90 GPAM 57678 hgsc.bcm.edu;bcgsc.ca 37 10 113940243 113940243 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GPAM NM_020918 exon4 c.T213C p.T71T CTGGGGAGTGCAG . 47.0 4.0 92.0 0.0 . 92 GPRASP1 9737 hgsc.bcm.edu;bcgsc.ca 37 X 101912553 101912553 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GPRASP1 NM_001099411 exon3 c.T3712C p.C1238R TACATATGTAAAG . 76.0 4.0 57.0 0.0 . 131 GPRASP1 9737 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 101909698 101909698 + Missense_Mutation SNP G G T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GPRASP1 NM_001099411 exon3 c.G857T p.R286M GGTTTAGGTCTAA . 80.0 66.0 76.0 0.0 . 131 GSTCD 79807 hgsc.bcm.edu;bcgsc.ca 37 4 106650634 106650634 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GSTCD NM_001031720 exon5 c.T1218C p.P406P TCTCCCTGCAGCA . 95.0 4.0 96.0 0.0 . 92 HACE1 57531 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 105244550 105244550 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . HACE1 NM_020771 exon9 c.G796A p.E266K GGTCTTCATTCTG . 44.0 23.0 114.0 0.0 . 663 HDDC2 51020 hgsc.bcm.edu;bcgsc.ca 37 6 125619942 125619942 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . HDDC2 NM_016063 exon3 c.T227C p.V76A TCATGAACCAGGG . 89.0 4.0 131.0 0.0 . 90 HERC2 8924 ucsc.edu;bcgsc.ca 37 15 28427625 28427625 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . HERC2 NM_004667 exon57 c.A8859G p.S2953S AGCTGCTGATTCC . 44.0 4.0 64.0 0.0 . 234 HSPA13 6782 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 15746539 15746539 + Missense_Mutation SNP T T C rs200321727 TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . HSPA13 NM_006948 exon5 c.A815G p.Y272C GTTTGATAGATCT . 37.0 11.0 38.0 0.0 T|0.999;C|0.000 226 IDE 3416 hgsc.bcm.edu;bcgsc.ca 37 10 94274762 94274762 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . IDE NM_004969 exon5 c.A699G p.E233E AATGCCTTCTTGG . 64.0 4.0 108.0 0.0 . 92 IGSF21 84966 hgsc.bcm.edu;bcgsc.ca 37 1 18691796 18691796 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . IGSF21 NM_032880 exon6 c.A620G p.Q207R CCCTACAGGACAG . 68.0 4.0 135.0 0.0 . 156 IL1RAPL2 26280 hgsc.bcm.edu;bcgsc.ca 37 X 104478544 104478544 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . IL1RAPL2 NM_017416 exon4 c.T399C p.V133V GACTGTTGCAGAG . 66.0 4.0 64.0 0.0 . 194 IQCH 64799 hgsc.bcm.edu;bcgsc.ca 37 15 67553702 67553702 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . IQCH NM_022784 exon2 c.A144G p.T48T TGAAACAGCAATC . 57.0 4.0 81.0 0.0 . 94 ITIH3 3699 broad.mit.edu;bcgsc.ca 37 3 52842646 52842646 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ITIH3 NM_002217 exon22 c.A2622G p.E874E CGGAGAAGGGCTG . 142.0 6.0 202.0 1.0 . 93 KAT6B 23522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 76790247 76790247 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . . NM_012330 exon18 c.A5665G p.M1889V CCTCCAATGAATC . 216.0 73.0 106.0 0.0 . . KIF16B 55614 hgsc.bcm.edu;bcgsc.ca 37 20 16360047 16360047 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . KIF16B NM_001199865 exon19 c.A2600G p.E867G TCATGTTCACATT . 82.0 4.0 74.0 0.0 . 291 KLF15 28999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 126071499 126071499 + Silent SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . KLF15 NM_014079 exon2 c.C267T p.G89G GCCCCCGCCACTG . 130.0 60.0 64.0 0.0 . 91 KLHL3 26249 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 136963985 136963985 + Splice_Site SNP C C A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . KLHL3 NM_017415 exon14 c.1591+1G>T . TCATTACCTGCGT . 93.0 42.0 99.0 0.0 . 90 LPHN3 23284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 62936570 62936570 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . LPHN3 NM_015236 exon23 c.G4354A p.G1452R AAAGATGGGACCC . 83.0 32.0 90.0 0.0 . 508 LRP1B 53353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 141092035 141092035 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . LRP1B NM_018557 exon79 c.A12210G p.L4070L TCTCTGTAAGTTC . 252.0 94.0 288.0 0.0 . 311 LRTOMT 220074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 71819858 71819858 + Missense_Mutation SNP C C A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . LRTOMT NM_001145308 exon7 c.C763A p.Q255K TTCTTGCAGTATG . 125.0 45.0 108.0 0.0 . 68 MAGEB10 139422 hgsc.bcm.edu;bcgsc.ca 37 X 27839847 27839847 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MAGEB10 NM_182506 exon3 c.A424G p.T142A AATGTAACCCAAA . 84.0 4.0 113.0 0.0 . 130 MATN2 4147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 98943556 98943556 + Missense_Mutation SNP C C G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MATN2 NM_002380 exon3 c.C518G p.P173R GGAGACCTCAGGA . 95.0 18.0 73.0 0.0 . 24 MTHFD2L 441024 hgsc.bcm.edu;bcgsc.ca 37 4 75023925 75023925 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MTHFD2L NM_001144978 exon1 c.A70G p.S24G GGCAGAAGCACAG . 101.0 5.0 36.0 0.0 . 91 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 9020072 9020072 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MUC16 NM_024690 exon21 c.C37423T p.R12475W ACAGCCGCTCTCT . 247.0 90.0 220.0 0.0 . 566 NAF1 92345 hgsc.bcm.edu;bcgsc.ca 37 4 164058390 164058390 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NAF1 NM_138386 exon6 c.A891G p.S297S TGCATCTGATCCC . 69.0 4.0 144.0 0.0 . 70 NCOR2 9612 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 124824953 124824953 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NCOR2 NM_006312 exon38 c.C5375T p.S1792F GACGAGGACGTGG . 51.0 4.0 90.0 0.0 . 229 NEDD4 4734 hgsc.bcm.edu;bcgsc.ca 37 15 56207944 56207944 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NEDD4 NM_198400 exon1 c.A1086G p.R362R AGTCTGTCTGGGA . 59.0 4.0 67.0 0.0 . 723 NHSL1 57224 hgsc.bcm.edu;bcgsc.ca 37 6 138753581 138753581 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NHSL1 NM_020464 exon5 c.A1913G p.H638R ACGCTGTGCCTGG . 75.0 4.0 128.0 0.0 . 68 NOTCH2 4853 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 120458918 120458919 + Frame_Shift_Ins INS - - AA novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NOTCH2 NM_024408 exon34 c.6427_6428insTT p.E2143fs AACTCTCAGACAG . 216.0 49.0 217.0 0.0 . 1441 NUP85 79902 hgsc.bcm.edu;bcgsc.ca 37 17 73214301 73214301 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NUP85 NM_024844 exon7 c.T497C p.L166P TCCATCTCCTTGA . 110.0 6.0 115.0 0.0 . 205 NYNRIN 57523 hgsc.bcm.edu;bcgsc.ca 37 14 24885708 24885708 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NYNRIN NM_025081 exon9 c.A4753G p.S1585G TGCAGGAGCTGCT . 55.0 4.0 83.0 0.0 . 3 NYNRIN 57523 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 24884365 24884365 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NYNRIN NM_025081 exon9 c.C3410T p.A1137V AGGAGGCCTTCCT . 15.0 12.0 36.0 0.0 . 3 OCRL 4952 hgsc.bcm.edu;bcgsc.ca 37 X 128695175 128695175 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . OCRL NM_000276 exon10 c.A844G p.S282G GACTTGAGCACAG . 112.0 5.0 111.0 0.0 . 206 OLFML2B 25903 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 161989875 161989875 + Missense_Mutation SNP C C A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . OLFML2B NM_015441 exon2 c.G272T p.R91M TTGATCCTCTGGC . 223.0 49.0 127.0 0.0 . 69 OVOL2 58495 hgsc.bcm.edu;bcgsc.ca 37 20 18022238 18022238 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . OVOL2 NM_021220 exon3 c.T451C p.F151L CGCAGAAGGTGCA . 123.0 5.0 114.0 0.0 . 68 PCLO 27445 hgsc.bcm.edu;bcgsc.ca 37 7 82580361 82580361 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PCLO NM_014510 exon6 c.T9543C p.V3181V AGTGGGAACAGAG . 100.0 4.0 90.0 0.0 . 29 PHLPP2 23035 hgsc.bcm.edu;bcgsc.ca 37 16 71683278 71683278 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PHLPP2 NM_015020 exon18 c.A3487G p.S1163G CCTTGCTGCCATT . 69.0 4.0 72.0 0.0 . 91 PIK3C2B 5287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 204401382 204401382 + Missense_Mutation SNP G G C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PIK3C2B NM_002646 exon28 c.C4101G p.I1367M ATCACTGATTCGG . 360.0 81.0 184.0 0.0 . 1310 PIK3R4 30849 hgsc.bcm.edu;bcgsc.ca 37 3 130449233 130449233 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PIK3R4 NM_014602 exon5 c.T1504C p.L502L TTTTTAACTGTAC . 86.0 4.0 85.0 0.0 . 1471 PLEKHA4 57664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 49357343 49357343 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PLEKHA4 NM_020904 exon11 c.C1097T p.T366M AGCAGCGTCTGGA . 121.0 59.0 106.0 0.0 . 227 PLXNC1 10154 hgsc.bcm.edu;bcgsc.ca 37 12 94631455 94631455 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PLXNC1 NM_005761 exon10 c.T1996C p.S666P ATTAAGTCCATTG . 55.0 4.0 71.0 0.0 . 92 POLE2 5427 hgsc.bcm.edu;bcgsc.ca 37 14 50118040 50118040 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . POLE2 NM_001197331 exon16 c.A1267G p.M423V TGCACATTTTATT . 83.0 4.0 159.0 0.0 . 229 PPP1R12A 4659 hgsc.bcm.edu;bcgsc.ca 37 12 80266678 80266678 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PPP1R12A NM_002480 exon2 c.T278C p.V93A TTTTCTACCAGAA . 74.0 4.0 122.0 0.0 . 273 PPP1R13B 23368 hgsc.bcm.edu;bcgsc.ca 37 14 104206859 104206859 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PPP1R13B NM_015316 exon12 c.T1894C p.S632P CCGTGGACAGTGA . 75.0 5.0 114.0 0.0 . 227 PROS1 5627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 93611837 93611837 + Silent SNP A A G rs199469491 alternate_allele TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PROS1 NM_000313 exon10 c.T1095C p.N365N ATGTTCATTCTTA . 421.0 172.0 371.0 0.0 A|0.999;C|0.001 153 PSMD13 5719 hgsc.bcm.edu;bcgsc.ca 37 11 248788 248788 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PSMD13 NM_175932 exon6 c.A587G p.Q196R AGCAGCAGGAGAG . 72.0 4.0 119.0 0.0 . 515 PTPRM 5797 hgsc.bcm.edu;bcgsc.ca 37 18 8376068 8376068 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PTPRM NM_001105244 exon25 c.A3196G p.I1066V CGAGAGATCAGAC . 67.0 4.0 68.0 0.0 . 228 QSER1 79832 hgsc.bcm.edu;bcgsc.ca 37 11 32977609 32977609 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . QSER1 NM_001076786 exon7 c.A4306G p.K1436E AACAAGAAGGAAT . 71.0 4.0 115.0 0.0 . 95 RASA1 5921 broad.mit.edu;bcgsc.ca 37 5 86665656 86665668 + Frame_Shift_Del DEL AGCACTTTAGTGA AGCACTTTAGTGA - novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 AGCACTTTAGTGA AGCACTTTAGTGA . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . RASA1 NM_002890 exon12 c.1637_1649del p.546_550del TAGTTCAGCACTT . 143.0 12.0 188.0 0.0 . 661 RASEF 158158 hgsc.bcm.edu;bcgsc.ca 37 9 85627416 85627416 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . RASEF NM_152573 exon5 c.A776G p.Q259R TTTGATTGTTCTT . 77.0 4.0 74.0 0.0 . 280 RELN 5649 hgsc.bcm.edu;bcgsc.ca 37 7 103162472 103162472 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . RELN NM_173054 exon48 c.T7665C p.S2555S CACCCCACTGAAA . 75.0 4.0 57.0 0.0 . 574 RNF157 114804 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 74169787 74169787 + Missense_Mutation SNP C C T rs144334591 TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . RNF157 NM_052916 exon3 c.G292A p.V98I ACTTGACGAGCCT . 131.0 62.0 152.0 0.0 C|1.000;T|0.000 228 SACS 26278 hgsc.bcm.edu;bcgsc.ca 37 13 23909856 23909856 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SACS NM_014363 exon10 c.A8159G p.D2720G ATTCTGTCTGATG . 72.0 4.0 106.0 0.0 . 298 SCAPER 49855 hgsc.bcm.edu;bcgsc.ca 37 15 77059425 77059425 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SCAPER NM_020843 exon10 c.T1253C p.M418T TCTGCCATGGACT . 76.0 4.0 155.0 0.0 . 137 SEPT4 5414 hgsc.bcm.edu;bcgsc.ca 37 17 56603141 56603141 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SEPT4 NM_001256782 exon5 c.A498G p.G166G AGACTCTCCTGAG . 58.0 4.0 80.0 0.0 . 68 SGK3 23678 hgsc.bcm.edu;bcgsc.ca 37 8 67752280 67752280 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SGK3 NM_001033578 exon11 c.A784G p.R262G GAGCACAGAGCTA . 75.0 4.0 85.0 0.0 . 1003 SGOL2 151246 hgsc.bcm.edu;bcgsc.ca 37 2 201437542 201437542 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SGOL2 NM_001160046 exon7 c.A2473G p.I825V AACCAAATATATG . 119.0 5.0 116.0 0.0 . 94 SLC17A6 57084 hgsc.bcm.edu;bcgsc.ca 37 11 22381052 22381052 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SLC17A6 NM_020346 exon4 c.A552G p.R184R TGTCAGAATACTG . 96.0 4.0 139.0 0.0 . 580 SLC24A3 57419 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 19698204 19698204 + Silent SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SLC24A3 NM_020689 exon16 c.C1752T p.S584S CTACTCCGTAGGC . 241.0 103.0 235.0 0.0 . 91 SLC7A13 157724 hgsc.bcm.edu;bcgsc.ca 37 8 87242258 87242258 + Silent SNP A A G rs141043236 byfrequency TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SLC7A13 NM_138817 exon1 c.T249C p.F83F CTTGAGAAAATAG . 87.0 4.0 53.0 0.0 A|0.996;G|0.004 90 SLCO1B3 28234 hgsc.bcm.edu;bcgsc.ca 37 12 21068948 21068948 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SLCO1B3 NM_019844 exon16 c.T1876C p.L626L GTCTACTTGGGCT . 58.0 5.0 59.0 0.0 . 155 SLITRK2 84631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 144905987 144905987 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SLITRK2 NM_001144005 exon5 c.G2044A p.G682S ACAGACGGCCATG . 51.0 43.0 57.0 0.0 . 136 SNAP91 9892 hgsc.bcm.edu;bcgsc.ca 37 6 84371275 84371275 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SNAP91 NM_001242794 exon5 c.A398G p.E133G GCCTTTTCATTCA . 72.0 4.0 134.0 0.0 . 23 SNX3 8724 hgsc.bcm.edu;bcgsc.ca 37 6 108544209 108544209 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SNX3 NM_003795 exon2 c.G203A p.R68K CTTCTTCTAACAG . 50.0 4.0 71.0 0.0 . 226 SRRM1 10250 hgsc.bcm.edu;bcgsc.ca 37 1 24997900 24997900 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SRRM1 NM_005839 exon16 c.A2424G p.G808G AGGTGGAAAGAAA . 66.0 4.0 100.0 0.0 . 93 STARD8 9754 hgsc.bcm.edu;bcgsc.ca 37 X 67937131 67937131 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . STARD8 NM_001142503 exon6 c.T375C p.S125S CTGGTCTCCTATG . 78.0 4.0 96.0 0.0 . 196 STK17B 9262 hgsc.bcm.edu;bcgsc.ca 37 2 197021354 197021354 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . STK17B NM_004226 exon3 c.A144G p.R48R ACATTGTCTAACC . 98.0 4.0 102.0 0.0 . 334 SYNE1 23345 hgsc.bcm.edu;bcgsc.ca 37 6 152763360 152763360 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SYNE1 NM_033071 exon31 c.A3879G p.S1293S CTTTGCTGAGATC . 73.0 4.0 107.0 0.0 . 607 SYNE2 23224 hgsc.bcm.edu;bcgsc.ca 37 14 64641759 64641759 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SYNE2 NM_182914 exon95 c.A17333G p.E5778G CTAAAGAGTCTGT . 59.0 4.0 96.0 0.0 . 164 TAS1R2 80834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 19186095 19186095 + Missense_Mutation SNP C C G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TAS1R2 NM_152232 exon1 c.G60C p.E20D AGCCGGCTCAGCC . 135.0 90.0 186.0 0.0 . 93 TENM2 57451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 167689611 167689611 + Silent SNP C C G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . . NM_001122679 exon29 c.C8094G p.A2698A CACGGCCTGGGCC . 63.0 26.0 60.0 0.0 . . TEP1 7011 hgsc.bcm.edu;bcgsc.ca 37 14 20859791 20859791 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TEP1 NM_007110 exon13 c.A2064G p.A688A CCTGTCTGCATTA . 72.0 4.0 149.0 0.0 . 95 TEX14 56155 hgsc.bcm.edu;bcgsc.ca 37 17 56638968 56638968 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TEX14 NM_001201457 exon30 c.A4208G p.H1403R GTAGAGTGAGCTC . 109.0 5.0 114.0 0.0 . 810 TMEFF2 23671 hgsc.bcm.edu;bcgsc.ca 37 2 193056689 193056689 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TMEFF2 NM_016192 exon2 c.T199C p.F67L AGAGGAAGAGATC . 91.0 4.0 86.0 0.0 . 524 TMF1 7110 hgsc.bcm.edu;bcgsc.ca 37 3 69079080 69079080 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TMF1 NM_007114 exon11 c.A2480G p.Q827R GACATCTGAATTT . 77.0 4.0 132.0 0.0 . 90 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7579349 7579349 + Missense_Mutation SNP A A C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af TP53,brain,glioma,-1 TP53 NM_000546 exon4 c.T338G p.F113C TGCAAGAAGCCCA . 137.0 84.0 200.0 0.0 . 70225 TRIM16L 147166 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 18638692 18638692 + Missense_Mutation SNP G G T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TRIM16L NM_001037330 exon5 c.G966T p.K322N TTCCAAGAAGGAA . 182.0 74.0 161.0 0.0 . 90 TRNT1 51095 hgsc.bcm.edu;bcgsc.ca 37 3 3189269 3189269 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TRNT1 NM_182916 exon7 c.T938C p.L313S TGAGGTTGAAGAT . 102.0 5.0 148.0 0.0 . 90 TSHZ2 128553 hgsc.bcm.edu;bcgsc.ca 37 20 51872639 51872639 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TSHZ2 NM_173485 exon2 c.A2642G p.E881G CACAAGAGCGTAT . 86.0 4.0 104.0 0.0 . 232 USP15 9958 hgsc.bcm.edu;bcgsc.ca 37 12 62790141 62790141 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . USP15 NM_001252078 exon20 c.T2637C p.A879A GATTGCTGTTTCC . 75.0 6.0 124.0 0.0 . 1084 USP47 55031 hgsc.bcm.edu;bcgsc.ca 37 11 11941963 11941963 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . USP47 NM_017944 exon9 c.G936A p.M312I AACCATGCATAGG . 58.0 4.0 102.0 0.0 . 660 USP9X 8239 hgsc.bcm.edu;bcgsc.ca 37 X 41088999 41088999 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . USP9X NM_001039591 exon43 c.A7398G p.T2466T GATGACACTTGCA . 108.0 5.0 79.0 0.0 . 563 VWA2 340706 hgsc.bcm.edu;bcgsc.ca 37 10 116045937 116045937 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . VWA2 NM_001272046 exon11 c.A1237G p.I413V GATGGCATTCCCT . 72.0 4.0 115.0 0.0 . 156 WDHD1 11169 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 55408242 55408242 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . WDHD1 NM_007086 exon26 c.A3356G p.Q1119R AGTTTCTGATTTG . 82.0 51.0 117.0 1.0 . 91 WSB1 26118 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 17 25630657 25630657 + Nonsense_Mutation SNP T T A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . WSB1 NM_015626 exon3 c.T474A p.Y158X TGTATATACAGGT . 90.0 34.0 115.0 0.0 . 226 YIPF6 286451 hgsc.bcm.edu;bcgsc.ca 37 X 67731743 67731743 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . YIPF6 NM_173834 exon2 c.A110G p.E37G AAGGAGAAATCAC . 50.0 4.0 47.0 0.0 . 130 ZAN 7455 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 100334504 100334504 + RNA SNP T T A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZAN . . . . CCGACCTATGGGA . 101.0 45.0 86.0 0.0 . 142 ZBTB41 360023 hgsc.bcm.edu;bcgsc.ca 37 1 197169179 197169179 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZBTB41 NM_194314 exon1 c.T425C p.F142S TAAAGAAATTCAA . 83.0 4.0 42.0 0.0 . 92 ZC3H12D 340152 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 6 149783104 149783104 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . . NM_207360 exon3 c.A308G p.H103R TTTCCATGGCTAC . 41.0 4.0 94.0 0.0 . . ZFYVE26 23503 hgsc.bcm.edu;bcgsc.ca 37 14 68215323 68215323 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZFYVE26 NM_015346 exon42 c.T7450C p.S2484P AGGCAGAACGCAG . 68.0 4.0 117.0 0.0 . 162 ZNF347 84671 hgsc.bcm.edu;bcgsc.ca 37 19 53643997 53643997 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF347 NM_001172675 exon5 c.A2087G p.K696R GCAAGCTTTGATG . 122.0 6.0 88.0 0.0 . 90 ZNF567 163081 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 37211090 37211090 + Missense_Mutation SNP G G T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF567 NM_152603 exon4 c.G1371T p.M457I TAGAATGAAGTCA . 108.0 32.0 92.0 0.0 . 90 ZNF576 79177 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 44103100 44103100 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF576 NM_001145347 exon3 c.G203A p.G68E TGCAGGGGGTCCT . 173.0 80.0 133.0 0.0 . 90 ZNF630 57232 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 47919903 47919903 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF630 NM_001037735 exon4 c.A164G p.D55G ATTACATCTGGTT . 27.0 21.0 22.0 0.0 . 131 ZNF662 389114 hgsc.bcm.edu;bcgsc.ca 37 3 42954744 42954744 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF662 NM_207404 exon4 c.A203G p.E68G TGGAAGAGCCATT . 62.0 4.0 127.0 0.0 . 90 ZNF777 27153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 149129992 149129992 + Silent SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF777 NM_015694 exon6 c.C1371T p.D457D CTCCTCGTCTTGT . 143.0 63.0 141.0 0.0 . 136