Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ABCC5 10057 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 183655819 183655819 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ABCC5 NM_005688 exon26 c.C3724T p.R1242C CCAGACGGAAGAG . 124.0 27.0 126.0 0.0 . 137 ACOT12 134526 hgsc.bcm.edu;bcgsc.ca 37 5 80655835 80655835 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ACOT12 NM_130767 exon5 c.T383C p.L128P GTTAGAAGTGTGA . 83.0 4.0 73.0 0.0 . 92 ADAMTSL1 92949 hgsc.bcm.edu;bcgsc.ca 37 9 18636002 18636002 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ADAMTSL1 NM_052866 exon6 c.T663C p.G221G AAAAGGTCCTGAT . 98.0 4.0 163.0 0.0 . 230 AFF1 4299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 88052964 88052964 + Missense_Mutation SNP T T A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . AFF1 NM_001166693 exon18 c.T3121A p.S1041T TTAAAATCCTTCT . 104.0 19.0 181.0 0.0 . 289 AGPAT4 56895 hgsc.bcm.edu;bcgsc.ca 37 6 161567572 161567572 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . AGPAT4 NM_020133 exon7 c.A827G p.K276R TAGAGCTTGTGCA . 64.0 4.0 68.0 0.0 . 90 AGPAT6 137964 hgsc.bcm.edu;bcgsc.ca 37 8 41472557 41472557 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . AGPAT6 NM_178819 exon10 c.T1043C p.V348A ACCCTGTTGCTAT . 90.0 5.0 124.0 0.0 . 90 AMPD2 271 hgsc.bcm.edu;bcgsc.ca 37 1 110173318 110173318 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . AMPD2 NM_004037 exon17 c.A2333G p.E778G TGATGGAGGAGTA . 68.0 4.0 94.0 0.0 . 292 ANK3 288 hgsc.bcm.edu;bcgsc.ca 37 10 61843261 61843261 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ANK3 NM_001204404 exon34 c.T4192C p.F1398L TGGAAAATGGCAG . 59.0 4.0 88.0 0.0 . 107 ANKIB1 54467 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 92028083 92028083 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ANKIB1 NM_019004 exon20 c.T3090C p.S1030S TGTCAGTGAAGGT . 129.0 51.0 103.0 0.0 . 432 ARAP2 116984 hgsc.bcm.edu;bcgsc.ca 37 4 36069848 36069848 + Missense_Mutation SNP T T C rs202134005 alternate_allele TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ARAP2 NM_015230 exon33 c.A4796G p.E1599G ACGGACTCTTTAT . 57.0 4.0 59.0 0.0 T|0.999;A|0.001 93 ARAP3 64411 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 141059772 141059772 + Silent SNP G G A rs146312944 TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ARAP3 NM_022481 exon2 c.C282T p.P94P CGGCACGGGCTTA . 134.0 66.0 150.0 0.0 G|1.000;A|0.000 291 ARHGAP35 2909 hgsc.bcm.edu;bcgsc.ca 37 19 47424967 47424967 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_004491 exon1 c.T3035C p.L1012P CTAAGCTCTCTAT . 123.0 5.0 113.0 0.0 . . ASAP2 8853 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 9533657 9533657 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ASAP2 NM_003887 exon24 c.C2565A p.S855R GCCCAGCGTAATG . 80.0 12.0 71.0 0.0 . 90 ASCC3 10973 hgsc.bcm.edu;bcgsc.ca 37 6 101109765 101109765 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ASCC3 NM_006828 exon16 c.A2620G p.S874G AATGGCTGAGTTT . 110.0 5.0 108.0 0.0 . 96 ATM 472 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 108138031 108138031 + Missense_Mutation SNP G G C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ATM NM_000051 exon17 c.G2600C p.S867T GTGTTAGTGATGC . 68.0 31.0 124.0 0.0 . 3419 BAG6 7917 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 31610072 31610072 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . BAG6 NM_004639 exon15 c.C2062T p.P688S CTCCAGGACTCCC . 102.0 7.0 66.0 0.0 . 154 BAZ2B 29994 broad.mit.edu;mdanderson.org 37 2 160295184 160295184 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . BAZ2B NM_013450 exon8 c.A923G p.D308G TTTGGGTCTGAAA . 18.0 3.0 25.0 0.0 . 94 BBS5 129880 hgsc.bcm.edu;bcgsc.ca 37 2 170343593 170343593 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . BBS5 NM_152384 exon3 c.A157G p.T53A TTGGTAACAAATT . 83.0 4.0 87.0 0.0 . 90 BCL11A 53335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 60687558 60687558 + Missense_Mutation SNP T T G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . BCL11A NM_022893 exon4 c.A2489C p.N830T ATATCATTATTCA . 50.0 31.0 84.0 0.0 . 1149 BCL7A 605 hgsc.bcm.edu;bcgsc.ca 37 12 122492735 122492735 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . BCL7A NM_020993 exon5 c.A464G p.Q155R ATTCACAGTCCTC . 75.0 4.0 68.0 0.0 . 685 BICD1 636 hgsc.bcm.edu;bcgsc.ca 37 12 32369322 32369322 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . BICD1 NM_001714 exon2 c.A355G p.S119G AAACAGAGCCGGG . 116.0 5.0 127.0 0.0 . 153 BICD1 636 hgsc.bcm.edu;bcgsc.ca 37 12 32520657 32520657 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . BICD1 NM_001714 exon9 c.A2818G p.R940G GCCGGGAGGCAAG . 73.0 4.0 60.0 0.0 . 153 BRWD1 54014 hgsc.bcm.edu;bcgsc.ca 37 21 40590495 40590495 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . BRWD1 NM_018963 exon30 c.T3474C p.G1158G TTTCTGACCCCAT . 86.0 5.0 92.0 0.0 . 94 BZRAP1 9256 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 56388536 56388536 + Silent SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . BZRAP1 NM_004758 exon19 c.G3120T p.L1040L CTCCACCAGTACA . 115.0 84.0 109.0 1.0 . 229 C10orf137 26098 hgsc.bcm.edu;bcgsc.ca 37 10 127431772 127431772 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . C10orf137 NM_001202438 exon18 c.A2517G p.R839R AAAGAGAATGGGT . 84.0 4.0 99.0 0.0 . 590 C1orf173 127254 hgsc.bcm.edu;bcgsc.ca 37 1 75078418 75078418 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . C1orf173 NM_001002912 exon9 c.T1076C p.V359A CTGTTCACCTGCA . 61.0 5.0 68.0 0.0 . 94 C5AR2 27202 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 47844736 47844736 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_001271750 exon2 c.C680A p.A227E GCTGGGCAGCCCG . 38.0 16.0 27.0 0.0 . . C9orf41 138199 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 9 77614715 77614715 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . C9orf41 NM_152420 exon4 c.T662C p.L221P TAACCTAGCATAG . 24.0 4.0 43.0 0.0 . 92 CCAR1 55749 hgsc.bcm.edu;bcgsc.ca 37 10 70515291 70515291 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CCAR1 NM_018237 exon13 c.A1623G p.Q541Q CACACAATGGTAA . 95.0 4.0 160.0 0.0 . 159 CCDC39 339829 hgsc.bcm.edu;bcgsc.ca 37 3 180361933 180361933 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CCDC39 NM_181426 exon12 c.T1640C p.L547P TTATCAAGTTCTT . 81.0 5.0 97.0 0.0 . 72 CCDC6 8030 hgsc.bcm.edu;bcgsc.ca 37 10 61612353 61612353 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CCDC6 NM_005436 exon2 c.A411G p.E137E TTCTTCTTCTTTC . 84.0 4.0 128.0 0.0 . 686 CCDC8 83987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 46915065 46915065 + Missense_Mutation SNP G G C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CCDC8 NM_032040 exon1 c.C1003G p.Q335E CCCTCTGATTATC . 160.0 20.0 205.0 0.0 . 93 CCDC88C 440193 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 91770230 91770230 + Silent SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CCDC88C NM_001080414 exon20 c.C3450T p.N1150N GCTTTCGTTCTCC . 76.0 5.0 104.0 0.0 . 25 CCK 885 hgsc.bcm.edu;bcgsc.ca 37 3 42305118 42305118 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CCK NM_000729 exon4 c.A5G p.N2S CCGCTGTTCATGG . 51.0 4.0 52.0 0.0 . 514 CCZ1B 221960 broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 6851599 6851599 + Missense_Mutation SNP T T A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_198097 exon10 c.A938T p.H313L ATTAAATGGAGCT . 254.0 39.0 250.0 1.0 . . CDC7 8317 hgsc.bcm.edu;bcgsc.ca 37 1 91978625 91978625 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CDC7 NM_001134419 exon7 c.G583A p.V195I GCCTTGGTAGACT . 73.0 4.0 166.0 0.0 . 1125 CDC7 8317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 91978829 91978829 + Missense_Mutation SNP G G T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CDC7 NM_001134419 exon7 c.G787T p.A263S ACAAATGCACAAA . 125.0 20.0 192.0 0.0 . 1125 CDCP1 64866 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 45153758 45153758 + Missense_Mutation SNP C C G rs149422328 alternate_allele TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CDCP1 NM_178181 exon3 c.G472C p.G158R TGACTCCGTCTGG . 60.0 28.0 94.0 0.0 C|1.000;T|0.000 117 CDH9 1007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 26906841 26906841 + Silent SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CDH9 NM_016279 exon4 c.G630T p.V210V TGGGTCCACTGAA . 73.0 20.0 87.0 0.0 . 99 CENPW 387103 hgsc.bcm.edu;bcgsc.ca 37 6 126661441 126661441 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CENPW NM_001012507 exon1 c.T22C p.S8P ATAGTCTCCCAGA . 68.0 4.0 66.0 0.0 . 90 CHD2 1106 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 93489406 93489406 + Missense_Mutation SNP G G C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CHD2 NM_001042572 exon12 c.G1337C p.S446T TCCACAGTAGGAA . 186.0 68.0 276.0 1.0 . 229 CHD2 1106 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 93489423 93489423 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CHD2 NM_001042572 exon12 c.A1354G p.T452A TCAAAAACCATCC . 199.0 76.0 288.0 0.0 . 229 CHD7 55636 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 61757511 61757511 + Missense_Mutation SNP C C G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CHD7 NM_017780 exon22 c.C4939G p.L1647V ACCATCCTGGTGT . 99.0 5.0 78.0 0.0 . 141 CHRM3 1131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 240072218 240072218 + Silent SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CHRM3 NM_000740 exon5 c.G1467A p.A489A GAAAGCGGCCCAG . 147.0 36.0 148.0 0.0 . 95 CNOT2 4848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 70724192 70724192 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CNOT2 NM_001199302 exon7 c.C512A p.P171Q GCTCGCCAAGCAT . 126.0 70.0 199.0 0.0 . 226 CNTNAP5 129684 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 125192079 125192079 + Missense_Mutation SNP T T G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CNTNAP5 NM_130773 exon5 c.T548G p.F183C CTGACTTTGATGG . 185.0 86.0 232.0 0.0 . 524 COL6A5 256076 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 130098302 130098302 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_153264 exon4 c.C709A p.L237I GCTGACCTCGTGT . 201.0 90.0 163.0 0.0 . . CR1 1378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 207679429 207679429 + Splice_Site SNP G G A rs199647026 TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CR1 NM_000573 exon2 c.301+1G>A . GCAGACGTAAGTA . 117.0 30.0 139.0 0.0 . 93 CREB3 10488 hgsc.bcm.edu;bcgsc.ca 37 9 35733445 35733445 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CREB3 NM_006368 exon4 c.A398G p.E133G AGAAGGAGGGGCT . 84.0 4.0 125.0 0.0 . 90 CYFIP2 26999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 156755023 156755023 + Missense_Mutation SNP C C G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . CYFIP2 NM_001037332 exon19 c.C2122G p.Q708E GCAGACCAGATCT . 108.0 21.0 115.0 0.0 . 22 DCHS2 54798 hgsc.bcm.edu;bcgsc.ca 37 4 155278418 155278418 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DCHS2 NM_017639 exon6 c.A753G p.E251E CATTACTTCCTTG . 33.0 4.0 42.0 0.0 . 94 DDX60L 91351 hgsc.bcm.edu;bcgsc.ca 37 4 169282339 169282339 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DDX60L NM_001012967 exon37 c.A4952G p.K1651R AAACACTTTAAAA . 94.0 4.0 113.0 0.0 . 69 DDX60L 91351 hgsc.bcm.edu;bcgsc.ca 37 4 169317190 169317190 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DDX60L NM_001012967 exon27 c.A3577G p.K1193E GAATCTTCAGATT . 146.0 6.0 207.0 0.0 . 69 DNAH17 8632 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 76503588 76503588 + Missense_Mutation SNP C C G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DNAH17 NM_173628 exon28 c.G4536C p.Q1512H CGGGAGCTGGGTG . 151.0 30.0 129.0 0.0 . 142 DNAH6 1768 hgsc.bcm.edu;bcgsc.ca 37 2 84924794 84924794 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DNAH6 NM_001370 exon47 c.A7620G p.L2540L GGTTTTAGCGGCC . 64.0 4.0 83.0 0.0 . 69 DNAJC25 548645 hgsc.bcm.edu;bcgsc.ca 37 9 114411855 114411855 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DNAJC25 NM_001015882 exon3 c.A612G p.K204K AGAAAAAGGCAAA . 81.0 4.0 118.0 0.0 . 22 DPP10 57628 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 116593811 116593811 + Missense_Mutation SNP A A C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DPP10 NM_001178034 exon22 c.A2041C p.I681L GCACCTATCACAG . 118.0 17.0 142.0 0.0 . 142 DSEL 92126 ucsc.edu;bcgsc.ca 37 18 65180906 65180906 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DSEL NM_032160 exon2 c.T970C p.F324L AATAGAACCAAAA . 43.0 4.0 84.0 0.0 . 157 DST 667 bcgsc.ca;mdanderson.org 37 6 56418422 56418422 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DST NM_015548 exon42 c.T7299C p.C2433C GCTTGCACAGGCC . 21.0 3.0 30.0 0.0 . 523 DUS4L 11062 hgsc.bcm.edu;bcgsc.ca 37 7 107216859 107216859 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . DUS4L NM_001270419 exon7 c.A528G p.E176E GGCTGAAGCAACA . 98.0 4.0 69.0 0.0 . 90 EFNA5 1946 hgsc.bcm.edu;broad.mit.edu 37 5 106763128 106763128 + Missense_Mutation SNP G G T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . EFNA5 NM_001962 exon2 c.C208A p.P70T CTTCTGGGACGGA . 97.0 4.0 123.0 0.0 . 90 EGR3 1960 broad.mit.edu;ucsc.edu 37 8 22548280 22548280 + Silent SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . EGR3 NM_004430 exon2 c.C870T p.D290D CAGCTCGTCCGAA . 48.0 12.0 21.0 1.0 . 90 EHD4 30844 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 42245961 42245961 + Splice_Site SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . EHD4 NM_139265 exon3 c.413+1G>T . TCCTTACCGATTC . 66.0 36.0 77.0 0.0 . 92 EIF4G3 8672 hgsc.bcm.edu;bcgsc.ca 37 1 21221985 21221985 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . EIF4G3 NM_001198802 exon15 c.A1859G p.K620R GTAGGCTTCCAGG . 67.0 4.0 86.0 0.0 . 91 EPHX1 2052 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 226030103 226030103 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . EPHX1 NM_001136018 exon7 c.C968A p.A323D TGGCTGCCTATAT . 111.0 53.0 85.0 0.0 . 281 EPS8 2059 hgsc.bcm.edu;bcgsc.ca 37 12 15774278 15774278 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . EPS8 NM_004447 exon21 c.A2442G p.E814E AAAAGATTCCACT . 67.0 6.0 64.0 0.0 . 94 ESR1 2099 hgsc.bcm.edu;bcgsc.ca 37 6 152265434 152265434 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ESR1 NM_000125 exon4 c.T887C p.L296P GCCCGCTCATGAT . 109.0 5.0 99.0 0.0 . 1042 ETAA1 54465 hgsc.bcm.edu;bcgsc.ca 37 2 67632242 67632242 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ETAA1 NM_019002 exon5 c.A2428G p.S810G GCTCAGAGCAACC . 73.0 5.0 77.0 0.0 . 156 EXOC6B 23233 hgsc.bcm.edu;bcgsc.ca 37 2 72707813 72707813 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . EXOC6B NM_015189 exon17 c.A1732G p.T578A TGTTGGTGATAAA . 76.0 4.0 111.0 0.0 . 68 FAM149A 25854 hgsc.bcm.edu;bcgsc.ca 37 4 187077241 187077241 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FAM149A NM_001006655 exon6 c.T471C p.C157C TGACTGTGTCAAA . 71.0 4.0 108.0 0.0 . 90 FAM5B 57795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 177247856 177247856 + Silent SNP A A T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FAM5B NM_021165 exon7 c.A1170T p.L390L GATCCTACGCCGG . 116.0 49.0 117.0 0.0 . 28 FAM65C 140876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 49214133 49214133 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FAM65C NM_080829 exon14 c.G1762T p.G588C GGGAGCCCCCAAA . 140.0 18.0 109.0 0.0 . 92 FAM81A 145773 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 59801108 59801108 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FAM81A NM_152450 exon6 c.G590A p.S197N AGCAGAGCACCAA . 567.0 149.0 583.0 0.0 . 91 FAM83B 222584 hgsc.bcm.edu;bcgsc.ca 37 6 54805894 54805894 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FAM83B NM_001010872 exon5 c.A2125G p.S709G TCTAAAAGCATGC . 78.0 4.0 72.0 0.0 . 96 FAT2 2196 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 150945475 150945475 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FAT2 NM_001447 exon1 c.G3018T p.R1006S TAGGGGCCTCCCA . 154.0 9.0 128.0 0.0 . 96 FER1L5 90342 hgsc.bcm.edu;bcgsc.ca 37 2 97365352 97365352 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FER1L5 NM_001113382 exon42 c.A4757G p.D1586G ACTTCGACCTATT . 106.0 5.0 105.0 0.0 . 23 FMO1 2326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 171236701 171236701 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FMO1 NM_002021 exon3 c.G152A p.R51K AAGGCAGAGCCAG . 191.0 46.0 124.0 0.0 . 515 FRAS1 80144 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 79204044 79204044 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FRAS1 NM_001166133 exon12 c.A1178G p.E393G GCTACGAGCCCTC . 97.0 6.0 131.0 0.0 . 68 FRK 2444 hgsc.bcm.edu;bcgsc.ca 37 6 116263618 116263618 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FRK NM_002031 exon8 c.A1477G p.T493A AGTCTGTTTCAAA . 102.0 5.0 143.0 0.0 . 948 FRY 10129 hgsc.bcm.edu;bcgsc.ca 37 13 32698997 32698997 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . FRY NM_023037 exon7 c.T701C p.V234A TTGGAGTGTTGGC . 87.0 4.0 92.0 0.0 . 142 GJA1 2697 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 121768871 121768871 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . GJA1 NM_000165 exon2 c.G878A p.R293K GCGACAGAAACAA . 50.0 6.0 85.0 0.0 . 92 GJA5 2702 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 147230516 147230516 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . GJA5 NM_005266 exon2 c.A831G p.G277G GAATTTTCCCCCA . 267.0 74.0 187.0 1.0 . 91 HIST1H1E 3008 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 26156843 26156843 + Missense_Mutation SNP G G T rs150948103 byfrequency;alternate_allele TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . HIST1H1E NM_005321 exon1 c.G225T p.K75N GGAGAAGAACAAC . 118.0 28.0 129.0 0.0 G|0.994;A|0.006 154 HKDC1 80201 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 71025391 71025391 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . HKDC1 NM_025130 exon17 c.T2423C p.L808P TGGGCCTGGACAG . 88.0 27.0 76.0 0.0 . 95 HMMR 3161 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 162911119 162911119 + Missense_Mutation SNP T T G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . HMMR NM_001142556 exon16 c.T1830G p.N610K GTTGAATGAACAT . 133.0 9.0 127.0 0.0 . 90 HSD17B3 3293 hgsc.bcm.edu;bcgsc.ca 37 9 99006632 99006632 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . HSD17B3 NM_000197 exon9 c.A651G p.K217K TTTTGCTTTATAT . 75.0 4.0 104.0 0.0 . 90 IARS 3376 hgsc.bcm.edu;bcgsc.ca 37 9 95051645 95051645 + Silent SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . IARS NM_013417 exon2 c.G57A p.L19L AAACTCCAAGATT . 58.0 4.0 115.0 0.0 . 92 KAT7 11143 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 47874270 47874270 + Missense_Mutation SNP G G T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_007067 exon3 c.G322T p.V108F CAAGTGGTTGATT . 121.0 99.0 146.0 0.0 . . KCNJ6 3763 hgsc.bcm.edu;bcgsc.ca 37 21 38997717 38997717 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KCNJ6 NM_002240 exon4 c.T1016C p.V339A GTCAGGACAGGTG . 80.0 4.0 114.0 0.0 . 91 KCNMA1 3778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 78669796 78669796 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KCNMA1 NM_001161352 exon25 c.A3075G p.E1025E GTACAGTTCTGTA . 39.0 4.0 61.0 0.0 . 93 KDM4D 55693 hgsc.bcm.edu;bcgsc.ca 37 11 94731384 94731384 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KDM4D NM_018039 exon3 c.T848C p.F283S CTGGCTTCAACCA . 85.0 5.0 107.0 0.0 . 226 KIAA0100 9703 hgsc.bcm.edu;bcgsc.ca 37 17 26946934 26946934 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KIAA0100 NM_014680 exon30 c.C5464T p.R1822W GCTGCCGCACAGC . 82.0 4.0 69.0 0.0 . 93 KIAA0391 9692 hgsc.bcm.edu;bcgsc.ca 37 14 35593210 35593210 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KIAA0391 NM_014672 exon2 c.A759G p.G253G CCAGGGAGCTCTC . 68.0 4.0 95.0 0.0 . 226 KIAA1239 57495 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 37447599 37447599 + Missense_Mutation SNP T T A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_001144990 exon7 c.T3989A p.I1330N GGGAAATCATTTA . 129.0 6.0 127.0 0.0 . . KIF13A 63971 hgsc.bcm.edu;bcgsc.ca 37 6 17834225 17834225 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KIF13A NM_001105567 exon12 c.A1233G p.E411E CTTCTCTTCCCAA . 125.0 5.0 115.0 0.0 . 137 KIF20B 9585 hgsc.bcm.edu;bcgsc.ca 37 10 91484863 91484863 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KIF20B NM_016195 exon15 c.A1949G p.D650G AATGTGACACTCG . 74.0 4.0 104.0 0.0 . 93 KIRREL2 84063 hgsc.bcm.edu;bcgsc.ca 37 19 36353409 36353409 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KIRREL2 NM_199180 exon12 c.G1525A p.V509M CCCACTGTGCGGA . 74.0 4.0 50.0 0.0 . 93 KLF10 7071 hgsc.bcm.edu;bcgsc.ca 37 8 103664250 103664250 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KLF10 NM_005655 exon3 c.T310C p.S104P CTTGAGAGGGTTC . 87.0 4.0 80.0 0.0 . 226 KLHDC10 23008 hgsc.bcm.edu;bcgsc.ca 37 7 129762020 129762020 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KLHDC10 NM_014997 exon5 c.T757C p.S253P AACCTATCCTGTG . 80.0 4.0 87.0 0.0 . 90 KLHL11 55175 hgsc.bcm.edu;bcgsc.ca 37 17 40010298 40010298 + Silent SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KLHL11 NM_018143 exon2 c.C1821T p.Y607Y ATCTTTGTAATAG . 81.0 4.0 119.0 0.0 . 90 KLKB1 3818 hgsc.bcm.edu;bcgsc.ca 37 4 187175807 187175807 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KLKB1 NM_000892 exon12 c.A1379G p.D460G CAAAAGATACACC . 79.0 4.0 136.0 0.0 . 227 KRI1 65095 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10671691 10671691 + Silent SNP G G C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KRI1 NM_023008 exon8 c.C669G p.S223S CTTCAGGGAATCT . 110.0 26.0 93.0 0.0 . 69 KRIT1 889 hgsc.bcm.edu;bcgsc.ca 37 7 91851228 91851228 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . KRIT1 NM_194456 exon15 c.A1551G p.E517E TTCAACTTCCAAG . 73.0 4.0 50.0 0.0 . 132 LATS1 9113 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 150001056 150001058 + In_Frame_Del DEL AGA AGA - novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 AGA AGA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . LATS1 NM_004690 exon5 c.2546_2548del p.849_850del CAGTGCAGAGGCC . 152.0 116.0 208.0 0.0 . 992 LGI4 163175 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 35622722 35622722 + Silent SNP C C T rs191436645 TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . LGI4 NM_139284 exon5 c.G429A p.L143L TCGGAACAGGAAT . 147.0 77.0 190.0 1.0 C|0.999;T|0.001 91 LMNA 4000 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 156108485 156108485 + Silent SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . LMNA NM_170707 exon11 c.C1905T p.G635G GGGTGGCAGCTTC . 242.0 50.0 191.0 0.0 . 228 MACF1 23499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 39751339 39751339 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MACF1 NM_012090 exon15 c.C1432A p.Q478K TACATTCAGGAGT . 194.0 153.0 257.0 0.0 . 165 MDN1 23195 hgsc.bcm.edu;bcgsc.ca 37 6 90428856 90428856 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MDN1 NM_014611 exon41 c.A6056G p.Q2019R CTTACCTGAACAT . 57.0 4.0 60.0 0.0 . 100 MLL5 55904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 104746372 104746372 + Nonsense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MLL5 NM_018682 exon18 c.C2518T p.Q840X CCCTGTCAAGAAA . 152.0 24.0 154.0 0.0 . 93 MS4A14 84689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 11 60184403 60184403 + Nonsense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MS4A14 NM_001261828 exon6 c.G2061A p.W687X ATTCTGGCAATTC . 89.0 17.0 102.0 0.0 . 90 MTRF1L 54516 hgsc.bcm.edu;bcgsc.ca 37 6 153313995 153313995 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MTRF1L NM_019041 exon5 c.A802G p.T268A CACCTGTTGGAAG . 63.0 4.0 42.0 0.0 . 90 MYH9 4627 hgsc.bcm.edu;bcgsc.ca 37 22 36696312 36696312 + Splice_Site SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MYH9 NM_002473 exon24 c.2839-2A>G . AGCTCCTGCCGGG . 60.0 4.0 52.0 0.0 . 292 MYOF 26509 hgsc.bcm.edu;bcgsc.ca 37 10 95109578 95109578 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . MYOF NM_013451 exon36 c.T4070C p.L1357P ATGAAGAGAACAG . 83.0 4.0 147.0 0.0 . 93 NAA16 79612 hgsc.bcm.edu;bcgsc.ca 37 13 41891035 41891035 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NAA16 NM_001110798 exon2 c.T108C p.I36I GATGATTCTGTCG . 81.0 4.0 86.0 0.0 . 90 NAV3 89795 hgsc.bcm.edu;bcgsc.ca 37 12 78388596 78388596 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NAV3 NM_014903 exon6 c.T685C p.Y229H GCCAGATATGCAA . 56.0 4.0 89.0 0.0 . 279 NBEA 26960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 35758164 35758164 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NBEA NM_015678 exon30 c.C4883A p.A1628D TCCTTGCCAAGTT . 126.0 73.0 149.0 0.0 . 144 NFX1 4799 hgsc.bcm.edu;bcgsc.ca 37 9 33351736 33351736 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NFX1 NM_147133 exon16 c.T2603C p.M868T CGTGTATGGCACC . 54.0 4.0 54.0 0.0 . 91 NR5A2 2494 hgsc.bcm.edu;bcgsc.ca 37 1 199997033 199997033 + Missense_Mutation SNP C C T rs142187332 TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . NR5A2 NM_003822 exon1 c.A58T p.M20L CTTACACCTATTG . 71.0 4.0 56.0 0.0 C|1.000;T|0.000 227 OPN4 94233 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 88421086 88421086 + Frame_Shift_Del DEL C C - novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . OPN4 NM_001030015 exon8 c.1047delC p.I349fs CGTCATCGCCAAG . 94.0 34.0 112.0 0.0 . 69 OR10A7 121364 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 55614885 55614885 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . OR10A7 NM_001005280 exon1 c.C77A p.S26Y AAGTTTCCCTCTT . 176.0 82.0 263.0 1.0 . 72 OR2K2 26248 hgsc.bcm.edu;bcgsc.ca 37 9 114089950 114089950 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . OR2K2 NM_205859 exon1 c.T764C p.L255P ATAGAGAGGGCAG . 61.0 4.0 101.0 0.0 . 69 OR52B4 143496 hgsc.bcm.edu;bcgsc.ca 37 11 4389188 4389188 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . OR52B4 NM_001005161 exon1 c.A338G p.E113G CCTGACTCAGAGA . 83.0 4.0 101.0 0.0 . 90 OVOL2 58495 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 18022310 18022310 + Missense_Mutation SNP C C G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . OVOL2 NM_021220 exon3 c.G379C p.G127R GGAAGCCCTTGCC . 142.0 6.0 157.0 0.0 . 68 OXCT1 5019 hgsc.bcm.edu;bcgsc.ca 37 5 41794835 41794835 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . OXCT1 NM_000436 exon12 c.T1116C p.T372T AAGAATAGTAACT . 66.0 4.0 46.0 0.0 . 133 PAK3 5063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 110439078 110439078 + Missense_Mutation SNP A A T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PAK3 NM_001128168 exon13 c.A1227T p.Q409H CCTGCAAGCTTTG . 58.0 49.0 46.0 0.0 . 1043 PAQR5 54852 hgsc.bcm.edu;bcgsc.ca 37 15 69672244 69672244 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PAQR5 NM_001104554 exon4 c.T74C p.L25P GCATCCTGTTCGG . 90.0 4.0 80.0 0.0 . 70 PCDHB14 56122 hgsc.bcm.edu;broad.mit.edu 37 5 140605206 140605206 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PCDHB14 NM_018934 exon1 c.C2129T p.A710V TCGTGGCGGTGCG . 57.0 4.0 34.0 0.0 . 91 PDE10A 10846 hgsc.bcm.edu;bcgsc.ca 37 6 165863852 165863852 + Splice_Site SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PDE10A NM_001130690 exon5 c.226-2A>G . TGGTACTTTGGAT . 84.0 5.0 100.0 0.0 . 519 PDE7A 5150 hgsc.bcm.edu;bcgsc.ca 37 8 66636575 66636575 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PDE7A NM_001242318 exon11 c.A1077G p.K359K AGCACATTTCAAA . 58.0 4.0 73.0 0.0 . 90 PGM3 5238 hgsc.bcm.edu;bcgsc.ca 37 6 83889643 83889643 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PGM3 NM_001199917 exon8 c.A915G p.G305G TGCATCTCCATCA . 108.0 5.0 116.0 0.0 . 90 PHYH 5264 hgsc.bcm.edu;bcgsc.ca 37 10 13333891 13333891 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PHYH NM_006214 exon5 c.T436C p.F146L CAGTGAAGCACTC . 63.0 4.0 44.0 0.0 . 90 PKD1L1 168507 hgsc.bcm.edu;broad.mit.edu 37 7 47849144 47849144 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PKD1L1 NM_138295 exon51 c.T7613C p.L2538P ACACAGAGGTGGA . 45.0 5.0 45.0 0.0 . 145 PKN3 29941 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 9 131469012 131469012 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PKN3 NM_013355 exon4 c.T432C p.A144A GGCAGCTGCCCAG . 54.0 5.0 57.0 0.0 . 521 POU4F2 5458 hgsc.bcm.edu;bcgsc.ca 37 4 147561644 147561644 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . POU4F2 NM_004575 exon2 c.T914C p.L305P AGTCCCTCACACT . 51.0 4.0 76.0 0.0 . 135 PPARGC1A 10891 hgsc.bcm.edu;bcgsc.ca 37 4 23816124 23816124 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PPARGC1A NM_013261 exon8 c.T982C p.S328P TCTTTGATGGTGG . 79.0 4.0 100.0 0.0 . 230 PPIP5K2 23262 hgsc.bcm.edu;bcgsc.ca 37 5 102490644 102490644 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PPIP5K2 NM_015216 exon12 c.A1400G p.E467G TATTAGAGATGTG . 55.0 4.0 68.0 0.0 . 92 PPP1R12A 4659 hgsc.bcm.edu;bcgsc.ca 37 12 80191131 80191131 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PPP1R12A NM_002480 exon16 c.A2136G p.G712G ACTTCTTCCTATT . 69.0 4.0 97.0 0.0 . 273 PPP2R2C 5522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 6377634 6377634 + Missense_Mutation SNP A A T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PPP2R2C NM_181876 exon4 c.T359A p.I120N TCGGTAATCTTCC . 190.0 92.0 208.0 0.0 . 1084 PPP3CC 5533 hgsc.bcm.edu;bcgsc.ca 37 8 22333119 22333119 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PPP3CC NM_001243974 exon3 c.A354G p.R118R GGACAGAGGCTAT . 85.0 4.0 90.0 0.0 . 227 PRKD2 25865 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 47207810 47207810 + Missense_Mutation SNP C C G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PRKD2 NM_016457 exon4 c.G608C p.S203T TGGCCACTGGCCA . 100.0 26.0 106.0 0.0 . 759 PSMD1 5707 hgsc.bcm.edu;bcgsc.ca 37 2 232028362 232028362 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PSMD1 NM_002807 exon21 c.A2402G p.Q801R AAGTTCAGTATAA . 75.0 4.0 80.0 0.0 . 92 PTCHD1 139411 broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 23411906 23411906 + Missense_Mutation SNP A A T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PTCHD1 NM_173495 exon3 c.A2271T p.L757F ATGCTTAATTTAT . 86.0 75.0 69.0 1.0 . 135 PTPRG 5793 hgsc.bcm.edu;bcgsc.ca 37 3 62180755 62180755 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PTPRG NM_002841 exon10 c.T1238C p.V413A GCCATGTCTCACC . 80.0 6.0 131.0 0.0 . 419 PTPRK 5796 hgsc.bcm.edu;bcgsc.ca 37 6 128388889 128388889 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PTPRK NM_001135648 exon12 c.A1932G p.R644R GGCTTCTCTCTTG . 83.0 4.0 97.0 0.0 . 231 PZP 5858 hgsc.bcm.edu;bcgsc.ca 37 12 9334596 9334596 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . PZP NM_002864 exon14 c.A1664G p.E555G TCAATCTCAAATT . 123.0 6.0 132.0 0.0 . 157 QSOX1 5768 hgsc.bcm.edu;bcgsc.ca 37 1 180163522 180163522 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . QSOX1 NM_002826 exon11 c.T1463C p.L488P CTCGCCTTGCAGG . 98.0 5.0 130.0 0.0 . 91 R3HCC1L 27291 hgsc.bcm.edu;bcgsc.ca 37 10 99991351 99991351 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_001256619 exon7 c.T1910C p.L637P TTGACCTCAGTGA . 75.0 5.0 123.0 0.0 . . RAD21 5885 hgsc.bcm.edu;bcgsc.ca 37 8 117870690 117870690 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RAD21 NM_006265 exon5 c.G382T p.D128Y CCACATCGATGTC . 82.0 4.0 56.0 0.0 . 227 RANBP9 10048 ucsc.edu;bcgsc.ca 37 6 13642747 13642747 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RANBP9 NM_005493 exon7 c.G1189A p.V397I CTAGAACGGTCTG . 43.0 4.0 30.0 0.0 . 414 RBL2 5934 hgsc.bcm.edu;bcgsc.ca 37 16 53513864 53513864 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RBL2 NM_005611 exon19 c.A2842G p.S948G AGCAGAAGCCATC . 98.0 4.0 141.0 0.0 . 841 RC3H2 54542 hgsc.bcm.edu;bcgsc.ca 37 9 125613389 125613389 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RC3H2 NM_001100588 exon20 c.A3351G p.K1117K ACTCTGTTTCTTC . 77.0 5.0 147.0 0.0 . 523 RGS6 9628 hgsc.bcm.edu;bcgsc.ca 37 14 72945005 72945005 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RGS6 NM_001204424 exon12 c.A822G p.R274R CGACAGACATTGT . 61.0 4.0 95.0 0.0 . 227 RICTOR 253260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 38958582 38958582 + Missense_Mutation SNP A A T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RICTOR NM_152756 exon24 c.T2383A p.S795T GGTGGGATAACGC . 217.0 93.0 220.0 0.0 . 849 RNF17 56163 hgsc.bcm.edu;bcgsc.ca 37 13 25399863 25399863 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RNF17 NM_001184993 exon16 c.G2198A p.C733Y AAGCCTGTGTAGC . 45.0 4.0 87.0 0.0 . 228 ROR1 4919 hgsc.bcm.edu;bcgsc.ca 37 1 64605903 64605903 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ROR1 NM_001083592 exon6 c.T722C p.V241A CATCCGTCCCAAA . 116.0 5.0 162.0 0.0 . 1536 RP1 6101 hgsc.bcm.edu;bcgsc.ca 37 8 55542178 55542178 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RP1 NM_006269 exon4 c.T5736C p.A1912A GTATGCTCTTTGT . 58.0 4.0 77.0 0.0 . 102 RPS6KA6 27330 hgsc.bcm.edu;bcgsc.ca 37 X 83389804 83389804 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . RPS6KA6 NM_014496 exon8 c.A632G p.H211R TTGATATGTCCTA . 52.0 4.0 58.0 0.0 . 615 SDAD1 55153 hgsc.bcm.edu;bcgsc.ca 37 4 76882410 76882410 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SDAD1 NM_018115 exon15 c.A1233G p.E411E AAGTTCTTCAGTC . 87.0 4.0 142.0 0.0 . 91 SEPN1 57190 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 26139198 26139198 + Silent SNP T T A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SEPN1 . . . . GTTCACTGAGGCC . 94.0 67.0 126.0 0.0 . 92 SETDB1 9869 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 1 150933423 150933423 + Nonsense_Mutation SNP C C G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SETDB1 NM_012432 exon16 c.C2885G p.S962X CTCCCTCAATCCC . 203.0 14.0 139.0 0.0 . 228 SF1 7536 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 64534515 64534515 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SF1 NM_001178030 exon12 c.C1814T p.P605L GGCGGCGGCGGCA . 74.0 14.0 61.0 0.0 . 227 SFMBT1 51460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 52962211 52962211 + Silent SNP A A C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SFMBT1 NM_016329 exon9 c.T1044G p.P348P ACCTGGAGGGGGG . 28.0 12.0 48.0 0.0 . 91 SGCD 6444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 155935693 155935693 + Missense_Mutation SNP A A T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_000337 exon4 c.A275T p.K92I ACGCCAAAGAAAT . 63.0 32.0 70.0 0.0 . . SGSM1 129049 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 22 25263061 25263061 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SGSM1 NM_001098497 exon10 c.G928A p.V310I TCCAGCGTCTACT . 116.0 8.0 86.0 0.0 . 27 SHISA5 51246 hgsc.bcm.edu;bcgsc.ca 37 3 48510952 48510952 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SHISA5 NM_016479 exon5 c.T451C p.S151P TGGTGGATGTGGT . 91.0 5.0 114.0 0.0 . 68 SHPRH 257218 hgsc.bcm.edu;bcgsc.ca 37 6 146243946 146243946 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SHPRH NM_173082 exon19 c.T3584C p.F1195S AGTAAGAACTGAA . 78.0 4.0 91.0 0.0 . 92 SHROOM4 57477 hgsc.bcm.edu;bcgsc.ca 37 X 50351123 50351123 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SHROOM4 NM_020717 exon6 c.A3019G p.N1007D CTGGGTTCTCAAG . 99.0 5.0 102.0 0.0 . 131 SIPA1L1 26037 ucsc.edu;bcgsc.ca 37 14 72205030 72205030 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SIPA1L1 NM_015556 exon21 c.A5259G p.E1753E TCGGGAAGATTTG . 24.0 4.0 28.0 0.0 . 156 SKIDA1 387640 hgsc.bcm.edu;bcgsc.ca 37 10 21806681 21806681 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_207371 exon4 c.A71G p.K24R ATTTGCTTCCCTT . 148.0 6.0 90.0 0.0 . . SLC24A4 123041 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 92790275 92790275 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SLC24A4 NM_153646 exon1 c.G101A p.C34Y TGGTGTGCTGTGC . 90.0 15.0 79.0 0.0 . 93 SLC2A7 155184 hgsc.bcm.edu;ucsc.edu 37 1 9074919 9074919 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SLC2A7 NM_207420 exon7 c.A724G p.R242G TCAGCCTCCTCAG . 37.0 4.0 17.0 0.0 . 514 SLC46A2 57864 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 115652239 115652239 + Silent SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SLC46A2 NM_033051 exon1 c.C723T p.P241P CACGGCGGGGAGC . 70.0 51.0 92.0 0.0 . 90 SLCO1A2 6579 hgsc.bcm.edu;bcgsc.ca 37 12 21453353 21453353 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SLCO1A2 NM_134431 exon9 c.A839G p.D280G ATGATGTCAGCAT . 44.0 4.0 64.0 0.0 . 157 SLCO1B1 10599 hgsc.bcm.edu;bcgsc.ca 37 12 21392086 21392086 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SLCO1B1 NM_006446 exon15 c.T2039C p.V680A ATTTTGTCCCTTC . 70.0 4.0 67.0 0.0 . 97 SLCO6A1 133482 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 101755554 101755554 + Missense_Mutation SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SLCO6A1 NM_173488 exon8 c.C1448T p.A483V ATCCCAGCAAATT . 195.0 13.0 243.0 0.0 . 96 SMARCA2 6595 hgsc.bcm.edu;bcgsc.ca 37 9 2029231 2029231 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SMARCA2 NM_139045 exon2 c.T209C p.M70T AAGGCATGCATCA . 73.0 4.0 103.0 0.0 . 653 SPINT3 10816 hgsc.bcm.edu;bcgsc.ca 37 20 44144183 44144183 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_006652 exon1 c.A66G p.E22E TGCTAGTTCTGAT . 107.0 5.0 100.0 0.0 . . SPIRE1 56907 hgsc.bcm.edu;bcgsc.ca 37 18 12453092 12453092 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SPIRE1 NM_001128626 exon14 c.T1822C p.S608P TATAAGACCAAGT . 59.0 4.0 111.0 0.0 . 90 SPTA1 6708 hgsc.bcm.edu;bcgsc.ca 37 1 158646052 158646052 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SPTA1 NM_003126 exon8 c.A991G p.T331A AAAGTGTCAGCTT . 148.0 6.0 128.0 0.0 . 142 SPTBN2 6712 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 66472881 66472881 + Missense_Mutation SNP G G C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SPTBN2 NM_006946 exon14 c.C1866G p.S622R CTCATAGCTCTGC . 118.0 73.0 96.0 0.0 . 155 STXBP5L 9515 hgsc.bcm.edu;bcgsc.ca 37 3 120941989 120941989 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . STXBP5L NM_014980 exon11 c.A1096G p.T366A TGTGAAACGCCCT . 60.0 4.0 72.0 0.0 . 77 SYNE2 23224 hgsc.bcm.edu;bcgsc.ca 37 14 64519805 64519805 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SYNE2 NM_182914 exon48 c.T9174C p.I3058I AGCTATTGATTTG . 84.0 4.0 146.0 0.0 . 164 SYTL5 94122 hgsc.bcm.edu;bcgsc.ca 37 X 37913595 37913595 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SYTL5 NM_001163334 exon2 c.T249C p.A83A TCAGGCTTGCTCA . 67.0 4.0 45.0 0.0 . 131 SZT2 23334 hgsc.bcm.edu;bcgsc.ca 37 1 43890875 43890875 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . SZT2 NM_015284 exon18 c.A2642G p.D881G CCAAAGACAGGTG . 77.0 5.0 125.0 0.0 . 144 TAF2 6873 hgsc.bcm.edu;bcgsc.ca 37 8 120810035 120810035 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TAF2 NM_003184 exon7 c.T844C p.S282P GGTATGATGTGGT . 95.0 4.0 91.0 0.0 . 274 TMBIM4 51643 hgsc.bcm.edu;bcgsc.ca 37 12 66531841 66531841 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TMBIM4 NM_016056 exon7 c.T616C p.S206P CAGGTGACAGTTT . 81.0 4.0 114.0 0.0 . 515 TMEM132A 54972 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 60701185 60701185 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TMEM132A NM_017870 exon8 c.C1531T p.R511C CAGGTCCGCGGCT . 69.0 38.0 64.0 0.0 . 227 TMEM209 84928 hgsc.bcm.edu;bcgsc.ca 37 7 129818251 129818251 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TMEM209 NM_032842 exon10 c.A1237G p.R413G TGATCCTTTCAAA . 54.0 4.0 60.0 0.0 . 92 TNN 63923 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 1 175067580 175067580 + Silent SNP T T G rs61747978 byfrequency;alternate_allele TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TNN NM_022093 exon9 c.T1968G p.S656S CACCTCTGCTGGT . 656.0 57.0 277.0 0.0 T|0.981;C|0.019 138 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7577534 7577534 + Missense_Mutation SNP C C A rs28934571 bycluster TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 TP53,mouth,carcinoma,0 TP53 NM_000546 exon7 c.G747T p.R249S GATGGGCCTCCGG . 123.0 91.0 191.0 0.0 C|1.000;|0.000 70225 TPR 7175 hgsc.bcm.edu;bcgsc.ca 37 1 186340129 186340129 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TPR NM_003292 exon3 c.T303C p.I101I CTGAGCAATTTCA . 84.0 4.0 102.0 0.0 . 228 TRAK1 22906 broad.mit.edu;bcgsc.ca 37 3 42234621 42234660 + Frame_Shift_Del DEL AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT - novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TRAK1 NM_001265608 exon8 c.824_863del p.275_288del AGACGGAAGATGC . 84.0 4.0 164.0 0.0 . 91 TTN 7273 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 179648880 179648880 + Missense_Mutation SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TTN NM_001267550 exon16 c.G2692A p.V898M TTTTCACCTCAAC . 259.0 12.0 256.0 0.0 . 636 TYW3 127253 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 75199081 75199081 + Silent SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . TYW3 NM_001162916 exon1 c.C153T p.G51G CGCTGGCCGCATC . 43.0 5.0 62.0 0.0 . 70 UBOX5 22888 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 3102976 3102976 + Silent SNP G G A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . UBOX5 NM_014948 exon3 c.C309T p.G103G AGCTGGGCCCAGG . 102.0 47.0 114.0 0.0 . 227 UCP1 7350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 141484605 141484605 + Silent SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . UCP1 NM_021833 exon3 c.G393A p.G131G GGGTTGCCCAATG . 72.0 32.0 110.0 0.0 . 91 UNC5D 137970 broad.mit.edu;bcgsc.ca 37 8 35647893 35647893 + Missense_Mutation SNP G G T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . UNC5D NM_080872 exon17 c.G2674T p.A892S TATTTCGCTACAC . 78.0 31.0 77.0 1.0 . 96 UNC80 285175 hgsc.bcm.edu;bcgsc.ca 37 2 210761117 210761117 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . UNC80 NM_032504 exon27 c.A4363G p.R1455G TACCACAGAAACA . 93.0 5.0 98.0 0.0 . 90 UROC1 131669 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 126229602 126229602 + Silent SNP C C T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . UROC1 NM_001165974 exon2 c.G162A p.P54P GACATCCGGGGGG . 45.0 9.0 39.0 0.0 . 91 USH2A 7399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 216373462 216373462 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . USH2A NM_007123 exon17 c.T3318C p.S1106S TTGAATACCTGAA . 17.0 10.0 41.0 0.0 . 115 USP34 9736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 61571021 61571021 + Missense_Mutation SNP G G T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . USP34 NM_014709 exon16 c.C2429A p.A810E AGTTCCGCATGTG . 173.0 112.0 196.0 0.0 . 579 VAV3 10451 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 108292166 108292166 + Missense_Mutation SNP T T A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . VAV3 NM_006113 exon14 c.A1310T p.D437V TAGTTATCACCTT . 57.0 4.0 108.0 0.0 . 1339 VEZT 55591 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 12 95650962 95650962 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . VEZT NM_017599 exon3 c.A205G p.S69G ATCAAAAGTTGGA . 42.0 4.0 75.0 0.0 . 23 VPS13D 55187 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 12403094 12403094 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . VPS13D NM_015378 exon42 c.A8871G p.G2957G AAGAGGAAAGTTA . 62.0 4.0 61.0 0.0 . 95 VPS35 55737 hgsc.bcm.edu;bcgsc.ca 37 16 46708512 46708512 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . VPS35 NM_018206 exon9 c.T975C p.F325F TATATCAAAAAGT . 77.0 4.0 100.0 0.0 . 90 WDR87 83889 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 38383676 38383676 + Missense_Mutation SNP C C G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_031951 exon4 c.G2550C p.M850I AAGTCTCATTTCT . 124.0 7.0 123.0 0.0 . . WNT9B 7484 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 17 44953863 44953863 + Nonsense_Mutation SNP G G T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . WNT9B NM_003396 exon4 c.G853T p.E285X TACATGGAGGACT . 137.0 76.0 144.0 0.0 . 522 XIRP1 165904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 39226588 39226588 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . XIRP1 NM_194293 exon2 c.T4349C p.M1450T CCTTCCATGGGCT . 49.0 14.0 64.0 0.0 . 158 ZBTB1 22890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 64989571 64989571 + Missense_Mutation SNP G G T novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZBTB1 NM_014950 exon2 c.G1349T p.C450F GTGCATGTGGTAA . 62.0 44.0 88.0 0.0 . 91 ZFP1 162239 broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 75204019 75204019 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZFP1 NM_153688 exon4 c.A1011G p.S337S GAACTCACAGCTC . 16.0 4.0 34.0 0.0 . 92 ZFYVE26 23503 hgsc.bcm.edu;bcgsc.ca 37 14 68248209 68248209 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZFYVE26 NM_015346 exon22 c.T4410C p.D1470D AGATGCATCCTTC . 49.0 4.0 68.0 0.0 . 162 ZNF17 7565 hgsc.bcm.edu;bcgsc.ca 37 19 57932584 57932584 + Missense_Mutation SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZNF17 NM_006959 exon3 c.T1724C p.V575A AAAAAGTTCACAC . 79.0 4.0 100.0 0.0 . 90 ZNF208 7757 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 22155053 22155053 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZNF208 NM_007153 exon4 c.G2783T p.W928L GACAACCAGCTGA . 68.0 13.0 101.0 0.0 . 7 ZNF345 25850 hgsc.bcm.edu;bcgsc.ca 37 19 37368330 37368330 + Missense_Mutation SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZNF345 NM_001242476 exon4 c.A598G p.K200E GGTGAGAAACCTT . 76.0 4.0 61.0 0.0 . 91 ZNF549 256051 hgsc.bcm.edu;bcgsc.ca 37 19 58048846 58048846 + Silent SNP A A G novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZNF549 NM_001199295 exon4 c.A474G p.K158K AGAGAAACACATC . 100.0 5.0 117.0 0.0 . 91 ZNF749 388567 broad.mit.edu;bcgsc.ca 37 19 57954874 57954874 + Missense_Mutation SNP C C A novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . NM_001023561 exon3 c.C358A p.L120M CATGACCTGCACC . 145.0 8.0 144.0 1.0 . . ZNF860 344787 hgsc.bcm.edu;bcgsc.ca 37 3 32030646 32030646 + Silent SNP T T C novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . ZNF860 NM_001137674 exon2 c.T75C p.T25T CTTGACTTTTAGG . 72.0 4.0 135.0 0.0 . 1 ICA1 3382 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 8198174 8198175 + Missense_Mutation DNP TG TG CT novel TCGA-CC-A3MB-01A-11D-A20W-10 TCGA-CC-A3MB-10A-01D-A20W-10 TG TG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b81ffdd9-b1d2-409e-abbb-27eb123acb69 73e746f4-36ea-4aec-8af3-a825b5917e67 . . . . . p.HM229QV CTAGCATGTGAGA . 108.0 46.0 134.0 0.0 . .