Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq AATK 9625 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 79094590 79094590 + Missense_Mutation SNP C C T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . AATK NM_001080395 exon11 c.G3146A p.G1049D CCAGAGCCTTGTG . 33.0 5.0 47.0 0.0 . 933 ACSF3 197322 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 89180877 89180877 + Missense_Mutation SNP A A G novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . ACSF3 NM_174917 exon6 c.A1108G p.T370A CTGACCACTGCCG . 53.0 17.0 87.0 0.0 . 68 ADCY9 115 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 4033250 4033250 + Silent SNP G G A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . ADCY9 NM_001116 exon7 c.C2502T p.S834S CGCGAGGGACAGC . 40.0 13.0 67.0 0.0 . 139 ALDH1B1 219 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 38396047 38396047 + Missense_Mutation SNP G G T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . ALDH1B1 NM_000692 exon2 c.G302T p.R101L CTGAGCGGGGCCG . 90.0 28.0 79.0 0.0 . 227 ALPPL2 251 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 233272463 233272463 + Silent SNP C C A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . ALPPL2 NM_031313 exon4 c.C460A p.R154R ATGAATCGGGCCA . 308.0 66.0 356.0 2.0 . 91 ANKRD34B 340120 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 79855469 79855469 + Missense_Mutation SNP A A G novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . ANKRD34B NM_001004441 exon5 c.T370C p.Y124H TAGCATAAACAAG . 128.0 33.0 145.0 0.0 . 69 ATOH1 474 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 94750441 94750441 + Missense_Mutation SNP G G T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . ATOH1 NM_005172 exon1 c.G364T p.V122L GGGCCGGTGAAAG . 110.0 12.0 132.0 0.0 . 90 ATP1A2 477 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 160104376 160104376 + Missense_Mutation SNP C C T rs150784486 alternate_allele TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . ATP1A2 NM_000702 exon14 c.C1930T p.R644W GCAGCCCGGCTCA . 233.0 62.0 194.0 2.0 C|1.000;A|0.000 518 AXIN1 8312 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 396352 396352 + Frame_Shift_Del DEL C C - novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . AXIN1 NM_181050 exon2 c.674delG p.S225fs CCAGAGCTCTGGT . 56.0 10.0 60.0 0.0 . 684 CACNA1E 777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 181767459 181767459 + Missense_Mutation SNP C C T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . CACNA1E NM_001205293 exon48 c.C6431T p.P2144L CCATCCCCTCTGT . 34.0 6.0 24.0 0.0 . 95 COL13A1 1305 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 71700763 71700763 + Missense_Mutation SNP G G A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . COL13A1 NM_001130103 exon34 c.G1865A p.G622D TGGACGGCAGGCC . 73.0 21.0 86.0 0.0 . 91 CST8 10047 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 23472345 23472345 + Missense_Mutation SNP T T A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . CST8 NM_005492 exon2 c.T41A p.I14N TCACCATTCCCCT . 118.0 16.0 106.0 2.0 . 90 DISP1 84976 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 223176572 223176572 + Silent SNP C C A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . DISP1 NM_032890 exon10 c.C1833A p.T611T CGTCACCAGTTTT . 177.0 14.0 150.0 0.0 . 68 DNAH7 56171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 196759699 196759699 + Splice_Site SNP C C A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . DNAH7 NM_018897 exon31 c.4896+1G>T . TACTTGCCTTTTC . 205.0 46.0 195.0 0.0 . 102 DNAH8 1769 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 38891940 38891940 + Splice_Site SNP T T C novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . DNAH8 NM_001206927 exon73 c.10962+2T>C . CAACTGTAAGTTT . 44.0 17.0 44.0 0.0 . 615 DNAJB8 165721 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 128181964 128181964 + Missense_Mutation SNP G G A rs142768827 TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . DNAJB8 NM_153330 exon3 c.C125T p.A42V TTCTCCGCCTCCT . 209.0 27.0 226.0 1.0 G|1.000;A|0.000 226 DRD5 1816 ucsc.edu;bcgsc.ca 37 4 9784617 9784617 + Missense_Mutation SNP T T C rs112029473 byfrequency TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . DRD5 NM_000798 exon1 c.T964C p.C322R CCTTTCTGCAGTG . 82.0 12.0 70.0 0.0 T|0.500;C|0.500 91 DST 667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 56391319 56391319 + Missense_Mutation SNP A A C novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . DST NM_015548 exon50 c.T10100G p.L3367R TCATTAAGGGAGT . 108.0 33.0 110.0 0.0 . 523 DZIP3 9666 broad.mit.edu;mdanderson.org 37 3 108363329 108363329 + Nonsense_Mutation SNP G G A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . DZIP3 NM_014648 exon14 c.G1460A p.W487X AAGGATGGAATAT . 205.0 14.0 179.0 1.0 . 91 EDN1 1906 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 12294540 12294540 + Missense_Mutation SNP A A G novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . EDN1 NM_001955 exon4 c.A436G p.K146E AAAGGAAAAGACT . 396.0 117.0 419.0 0.0 . 91 EPHA5 2044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 66467871 66467871 + Missense_Mutation SNP G G A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . EPHA5 NM_004439 exon3 c.C398T p.T133I CGCAGGGTAAATT . 41.0 7.0 43.0 0.0 . 1430 ERBB3 2065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 56478884 56478884 + Nonsense_Mutation SNP A A T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . ERBB3 NM_001982 exon3 c.A340T p.K114X GATGGGAAGTTTG . 141.0 16.0 128.0 0.0 . 1403 FSIP1 161835 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 40062634 40062634 + Missense_Mutation SNP A A G novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . FSIP1 NM_152597 exon3 c.T304C p.C102R CTGAACACTCAGA . 42.0 7.0 45.0 0.0 . 517 GRAMD1B 57476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 123483491 123483491 + Silent SNP C C A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . GRAMD1B NM_020716 exon14 c.C1513A p.R505R CGCTATCGAAAAC . 122.0 31.0 107.0 0.0 . 69 GRM6 2916 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 178413890 178413890 + Missense_Mutation SNP G G T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . GRM6 NM_000843 exon7 c.C1449A p.S483R GCCACTGCTGGCA . 101.0 23.0 107.0 1.0 . 588 HMCN1 83872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 185992215 185992215 + Silent SNP T T C novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . HMCN1 NM_031935 exon36 c.T5679C p.A1893A AGATGCTGGCAGA . 150.0 28.0 142.0 0.0 . 113 KIRREL 55243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158059547 158059547 + Missense_Mutation SNP T T C novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . KIRREL NM_018240 exon10 c.T1211C p.V404A ATGCTGTGAGGGG . 228.0 43.0 187.0 0.0 . 91 LILRB5 10990 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 54756260 54756260 + Missense_Mutation SNP G G T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . LILRB5 NM_001081442 exon11 c.C1545A p.S515R AACTGGGCTGGCC . 55.0 10.0 77.0 0.0 . 92 LONRF3 79836 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 118145797 118145797 + Missense_Mutation SNP A A G novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . LONRF3 NM_001031855 exon8 c.A1672G p.I558V GTGCCTATTTTCG . 103.0 28.0 147.0 0.0 . 289 LRFN2 57497 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 40360440 40360440 + Missense_Mutation SNP T T C novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . LRFN2 NM_020737 exon3 c.A1612G p.I538V CCCCGATGACCAG . 72.0 17.0 86.0 1.0 . 93 MBD5 55777 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 149226010 149226010 + Silent SNP T T C novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . MBD5 NM_018328 exon9 c.T498C p.N166N TAAGAATCCTTTC . 131.0 9.0 105.0 0.0 . 95 MGA 23269 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 42059142 42059142 + Silent SNP C C A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . MGA NM_001164273 exon24 c.C8862A p.L2954L TGGCCTCCCTGCA . 92.0 13.0 80.0 2.0 . 522 MRPL3 11222 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 131208896 131208896 + Missense_Mutation SNP C C T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . MRPL3 NM_007208 exon5 c.G497A p.R166Q AGTTCCCGGTAAA . 64.0 12.0 42.0 0.0 . 90 MTOR 2475 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 11298100 11298100 + Missense_Mutation SNP C C G novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . MTOR NM_004958 exon13 c.G2008C p.D670H GAATGTCAGGGTC . 160.0 50.0 161.0 0.0 . 1439 MUC5B 727897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 1262923 1262923 + Missense_Mutation SNP G G A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . . NM_002458 exon31 c.G4813A p.G1605R TGCAGGGGACGTG . 102.0 24.0 132.0 0.0 . . OR2T2 401992 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 248616426 248616426 + Missense_Mutation SNP G G A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . OR2T2 NM_001004136 exon1 c.G328A p.G110R CTGATTGGAGGGG . 1212.0 57.0 915.0 1.0 . 23 PCK1 5105 hgsc.bcm.edu;bcgsc.ca 37 20 56137828 56137828 + Frame_Shift_Del DEL G G - novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . PCK1 NM_002591 exon4 c.483delG p.T161fs GCTGACGGATTCA . 141.0 29.0 138.0 0.0 . 227 PDZRN4 29951 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 41966919 41966919 + Missense_Mutation SNP C C G novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . PDZRN4 NM_001164595 exon10 c.C2338G p.Q780E GCCACCCAGTCCT . 136.0 21.0 114.0 0.0 . 296 PKD1L1 168507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 47886599 47886599 + Silent SNP A A C novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . PKD1L1 NM_138295 exon32 c.T5031G p.A1677A TGCCTTAGCTAAA . 181.0 52.0 193.0 0.0 . 145 PLA2G4E 123745 hgsc.bcm.edu;bcgsc.ca 37 15 42285005 42285005 + Missense_Mutation SNP C C T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . . NM_001206670 exon13 c.G1400A p.S467N TCCTGGCTGCGCT . 74.0 7.0 114.0 0.0 . . PLB1 151056 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 28761221 28761221 + Missense_Mutation SNP G G A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . PLB1 NM_001170585 exon10 c.G624A p.M208I GCTGATGGGGGTG . 33.0 13.0 42.0 0.0 . 141 PLEKHM2 23207 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 16060357 16060357 + Silent SNP C C T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . PLEKHM2 NM_015164 exon20 c.C2988T p.S996S CTTGAGCCTCATC . 182.0 50.0 265.0 0.0 . 23 PNPLA3 80339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 44328955 44328955 + Silent SNP C C T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . PNPLA3 NM_025225 exon4 c.C684T p.P228P TGTCCCCCCGGAT . 121.0 22.0 80.0 0.0 . 90 POU6F2 11281 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 39379463 39379463 + Missense_Mutation SNP C C A rs150071017 byfrequency;alternate_allele TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . POU6F2 NM_007252 exon6 c.C734A p.A245E AACAGGCGCCTCA . 75.0 14.0 59.0 0.0 C|0.994;T|0.006 90 PPP1CA 5499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 67166225 67166225 + Missense_Mutation SNP T T C novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . PPP1CA NM_001008709 exon6 c.A883G p.S295G CCACACTCATCAT . 76.0 5.0 104.0 0.0 . 659 PTBP2 58155 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 97250800 97250800 + Silent SNP A A G rs142048957 byfrequency;alternate_allele TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . PTBP2 NM_021190 exon8 c.A894G p.T298T GGAGACATCCCTC . 74.0 21.0 81.0 1.0 A|1.000;T|0.000 90 RABGGTA 5875 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 24737122 24737122 + Missense_Mutation SNP G G T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . . NM_004581 exon12 c.C1190A p.P397H AGCAGGGGGTCCA . 158.0 25.0 189.0 1.0 . . REEP2 51308 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 137780443 137780443 + Missense_Mutation SNP G G C novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . REEP2 NM_016606 exon5 c.G304C p.E102Q CCATAGGAGATCG . 109.0 24.0 121.0 0.0 . 90 RHPN2 85415 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 33493213 33493213 + Missense_Mutation SNP C C T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . RHPN2 NM_033103 exon9 c.G1045A p.A349T GGTGGGCCTTCAC . 192.0 22.0 194.0 0.0 . 516 SERTAD4 56256 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 210412936 210412936 + Missense_Mutation SNP A A T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . SERTAD4 NM_019605 exon3 c.A274T p.S92C CCACTCAGCAGCT . 186.0 65.0 140.0 0.0 . 92 SLC25A38 54977 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 39433444 39433444 + Missense_Mutation SNP T T G novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . SLC25A38 NM_017875 exon5 c.T557G p.L186R CTCTCCTTCGAGA . 184.0 31.0 156.0 0.0 . 90 SUSD1 64420 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 114911630 114911630 + Silent SNP T T A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . SUSD1 NM_022486 exon3 c.A267T p.T89T GCAAGATGTGTGG . 118.0 22.0 141.0 1.0 . 90 SVEP1 79987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 113137703 113137703 + Silent SNP C C T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . SVEP1 NM_153366 exon46 c.G10545A p.V3515V AGGGGCCACACAG . 173.0 28.0 180.0 0.0 . 75 TDRD1 56165 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 115987675 115987675 + Missense_Mutation SNP T T C novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . TDRD1 NM_198795 exon24 c.T3410C p.M1137T AAAAGATGTATAG . 42.0 10.0 51.0 0.0 . 90 TRIM36 55521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 114462308 114462308 + Silent SNP C C T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . TRIM36 NM_018700 exon10 c.G2079A p.V693V ACAGTCCACTTGG . 129.0 31.0 120.0 0.0 . 725 TRPM1 4308 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 31318460 31318460 + Missense_Mutation SNP C C T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . TRPM1 NM_001252020 exon26 c.G3562A p.D1188N CCTCGTCGCTAAG . 38.0 5.0 43.0 0.0 . 94 TRPM3 80036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 73426150 73426150 + Silent SNP C C A rs200079844 alternate_allele TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . TRPM3 NM_001007470 exon7 c.G525T p.P175P GAAAAACGGCAGG . 144.0 30.0 122.0 0.0 C|0.999;T|0.000 521 UBQLN2 29978 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 56590709 56590709 + Missense_Mutation SNP C C G novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . UBQLN2 NM_013444 exon1 c.C403G p.P135A TCCACACCTATTT . 127.0 19.0 138.0 0.0 . 131 UNC80 285175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 210680056 210680056 + Missense_Mutation SNP C C A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . UNC80 NM_182587 exon9 c.C1276A p.L426M ACCAATCTGCGTA . 91.0 12.0 50.0 0.0 . 90 WDR52 55779 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 113092280 113092280 + Missense_Mutation SNP G G A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . WDR52 NM_001164496 exon18 c.C2422T p.P808S GGATGGGATTGTC . 89.0 9.0 99.0 0.0 . 90 ZFC3H1 196441 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 72021636 72021636 + Missense_Mutation SNP T T A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . ZFC3H1 NM_144982 exon21 c.A4025T p.N1342I GTCTCATTTGTAA . 76.0 11.0 91.0 0.0 . 138 ZNF208 7757 hgsc.bcm.edu;broad.mit.edu 37 19 22156012 22156012 + Silent SNP G G T novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . ZNF208 NM_007153 exon4 c.C1824A p.P608P TTTGTAGGGTTTC . 28.0 5.0 30.0 0.0 . 7 ZNF267 10308 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 31926823 31926823 + Missense_Mutation SNP G G A novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . ZNF267 NM_003414 exon4 c.G1253A p.R418H CCTTTCGCTGTAG . 34.0 11.0 35.0 0.0 . 138 ZNF551 90233 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58198623 58198623 + Missense_Mutation SNP G G C novel TCGA-CC-A5UC-01A-11D-A28X-10 TCGA-CC-A5UC-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 14c093b0-daba-46f0-9fee-73efbe76cc2b 0e3769b2-9456-4937-bd2b-27960a8ab40c . ZNF551 NM_138347 exon3 c.G980C p.R327T ACCAGAGACGTCA . 75.0 23.0 77.0 0.0 . 91