Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
A1BG	1	ucsc.edu;mdanderson.org	37	19	58864479	58864479	+	Missense_Mutation	SNP	C	C	A	rs893184	byfrequency;alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	A1BG	NM_130786	exon3	c.A155T	p.H52L	TCCAGGTGGGCCT	.	47.0	19.0	69.0	0.0	C|0.873;T|0.127	90
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	8988264	8988264	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	A2ML1	NM_144670	exon6	c.643+2T>C	.	ATATGGTAGGTGG	.	80.0	32.0	133.0	0.0	.	93
AAR2	25980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34832689	34832689	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_001271874	exon3	c.G828T	p.R276R	GAAGCGGCTCCTG	.	189.0	129.0	137.0	0.0	.	.
ACTR1B	10120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98275016	98275016	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ACTR1B	NM_005735	exon6	c.T531G	p.P177P	GGAGTGAGGCATG	.	69.0	33.0	96.0	0.0	.	91
ADORA3	140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	112031572	112031572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ADORA3	NM_020683	exon3	c.G532T	p.A178S	AGTGGGCATTGTA	.	280.0	128.0	237.0	0.0	.	156
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100356775	100356775	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	AGL	NM_000642	exon22	c.2813-1G>T	.	TTTTCAGGTTTAA	.	80.0	37.0	62.0	0.0	.	92
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100356784	100356784	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	AGL	NM_000644	exon22	c.T2821G	p.S941A	TTAATGTCTGTAT	.	86.0	41.0	70.0	0.0	.	92
ALDH16A1	126133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49962955	49962955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ALDH16A1	NM_001145396	exon4	c.C349T	p.R117W	CACCAGCGGCTGC	.	65.0	27.0	90.0	0.0	.	91
AMFR	267	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	56396835	56396835	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	AMFR	NM_001144	exon14	c.C1918T	p.Q640X	TCTGCTGCTTCTG	.	34.0	5.0	55.0	0.0	.	1009
ANKEF1	63926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	10030419	10030424	+	In_Frame_Del	DEL	ATTTAA	ATTTAA	-	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	ATTTAA	ATTTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_198798	exon6	c.1202_1207del	p.401_403del	CCAGATATTTAAA	.	82.0	27.0	127.0	0.0	.	.
APPL1	26060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57271521	57271521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	APPL1	NM_012096	exon3	c.A155G	p.N52S	CATAGAATGAATT	.	469.0	149.0	548.0	0.0	.	153
ARSF	416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3019189	3019189	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ARSF	NM_004042	exon8	c.A1029G	p.T343T	CTTTACATCAGAT	.	131.0	110.0	276.0	0.0	.	132
C14orf93	60686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23456717	23456717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	C14orf93	NM_021944	exon7	c.G1324A	p.A442T	GGCGGGCCACCCA	.	72.0	49.0	62.0	0.0	.	91
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	763554	763554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	C19orf21	NM_173481	exon5	c.G2004T	p.W668C	GCGCTGGGAATCC	.	26.0	12.0	43.0	0.0	.	91
C3orf17	25871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112732231	112732231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	C3orf17	NM_015412	exon4	c.A361G	p.T121A	CTTTGGTAGTTAA	.	541.0	335.0	544.0	0.0	.	90
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	121434235	121434235	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	C6orf170	NM_152730	exon28	c.C3142T	p.Q1048X	TTTGCTGCTGTTT	.	89.0	79.0	183.0	0.0	.	92
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181701871	181701871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CACNA1E	NM_001205293	exon20	c.G2649T	p.W883C	ACCATGGCTGGCC	.	231.0	132.0	159.0	0.0	.	95
CES2	8824	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	66976621	66976621	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CES2	NM_003869	exon10	c.G1545A	p.P515P	GCCACCGCACATG	.	99.0	31.0	76.0	0.0	.	90
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40049157	40049157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CHD6	NM_032221	exon31	c.C6118T	p.H2040Y	GACTATGGCAGTT	.	39.0	8.0	36.0	0.0	.	238
CKM	1158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45810804	45810804	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CKM	NM_001824	exon7	c.C882A	p.G294G	ATGCACGCCTCCA	.	42.0	16.0	65.0	0.0	.	91
CRISPLD2	83716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84884214	84884214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CRISPLD2	NM_031476	exon5	c.A533G	p.N178S	CTGTGAACACCTG	.	85.0	20.0	96.0	0.0	.	90
CST9	128822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23584366	23584366	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CST9	NM_001008693	exon2	c.A261T	p.R87R	CTTACCTCGCCAC	.	33.0	16.0	41.0	0.0	.	91
CTBP2	1488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	126714944	126714944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CTBP2	NM_022802	exon1	c.C1385T	p.A462V	GTCAAGGCCACCC	.	58.0	36.0	67.0	0.0	.	90
CTCF	10664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67650677	67650677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CTCF	NM_006565	exon5	c.G982T	p.D328Y	GACTGCGACATGG	.	134.0	36.0	112.0	0.0	.	91
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	T	rs121913396	bycluster	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95T	p.D32V	ACCTGGACTCTGG	.	164.0	41.0	188.0	0.0	.	24361
DACH1	1602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	72049330	72049330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DACH1	NM_080759	exon10	c.C2032A	p.P678T	TCTCTGGGGTCAG	.	59.0	26.0	103.0	0.0	.	135
DKK2	27123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	107845304	107845304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DKK2	NM_014421	exon4	c.C587T	p.A196V	TGACGAGCACAGC	.	127.0	55.0	206.0	0.0	.	661
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124335940	124335940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DMBT1	NM_007329	exon7	c.G309T	p.R103S	CCTGAGGCTGGTG	.	37.0	13.0	30.0	0.0	.	494
DNAJC17	55192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	41060161	41060161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DNAJC17	NM_018163	exon11	c.G892A	p.D298N	CCTGGTCTTCCTG	.	21.0	16.0	14.0	0.0	.	226
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25467523	25467523	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DNMT3A	NM_153759	exon11	c.988-2A>G	.	CAGTTCTAGACAG	.	35.0	21.0	62.0	0.0	.	1924
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25467466	25467466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DNMT3A	NM_175629	exon14	c.G1610T	p.C537F	ATGGTGCAGTAGG	.	56.0	24.0	73.0	0.0	.	1924
DQX1	165545	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74751076	74751076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DQX1	NM_133637	exon4	c.G790A	p.V264M	CTAGCACATCTCC	.	68.0	26.0	102.0	0.0	.	92
DYNC1I1	1780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	95705439	95705439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DYNC1I1	NM_004411	exon15	c.A1631G	p.H544R	CCGTGCATCCTGC	.	89.0	66.0	101.0	0.0	.	94
DYRK1A	1859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	38865317	38865317	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DYRK1A	NM_101395	exon9	c.952-2A>T	.	TATTTCAGATATA	.	62.0	31.0	68.0	0.0	.	792
EIF3H	8667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	117658834	117658834	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	EIF3H	NM_003756	exon7	c.G837A	p.Q279Q	GCGACGCTGCTGA	.	50.0	20.0	60.0	0.0	.	658
ELF3	1999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201982370	201982370	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ELF3	NM_001114309	exon7	c.C749G	p.P250R	GCCGGCCCCGAAA	.	258.0	161.0	185.0	0.0	.	226
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	79472325	79472325	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ELTD1	NM_022159	exon1	c.G15T	p.P5P	TAGGAGCGGGAGG	.	178.0	81.0	138.0	0.0	.	24
EXO1	9156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	242048690	242048690	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	EXO1	NM_130398	exon15	c.A2286C	p.R762S	TGCCAGAGCCAGT	.	133.0	62.0	87.0	0.0	.	661
EXOSC3	51010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	37783971	37783971	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	EXOSC3	NM_016042	exon2	c.A414G	p.P138P	AGAAGCTGGCTCA	.	41.0	17.0	82.0	0.0	.	135
F13B	2165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197032133	197032133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	F13B	NM_001994	exon2	c.A119G	p.Y40C	AAAGTATAGTAAT	.	227.0	121.0	133.0	0.0	.	92
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48888574	48888574	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	FBN1	NM_000138	exon6	c.T444C	p.P148P	ACAAACAGCTGTA	.	55.0	11.0	63.0	0.0	.	92
FCGBP	8857	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40433334	40433334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	FCGBP	NM_003890	exon2	c.G935T	p.G312V	TGGATGCCCACAT	.	18.0	7.0	45.0	0.0	.	98
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	76024770	76024770	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	FILIP1	NM_015687	exon5	c.C778T	p.Q260X	CAAGTTGTTCAAT	.	47.0	42.0	80.0	0.0	.	94
GALNT8	26290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	4848403	4848403	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GALNT8	NM_017417	exon3	c.C584G	p.S195C	CTCTGTCCATTAT	.	75.0	37.0	112.0	0.0	.	230
GMPPB	29925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49759578	49759578	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GMPPB	NM_021971	exon8	c.C771T	p.D257D	ACTTGGGTCCTGA	.	69.0	25.0	76.0	0.0	.	90
GNAT3	346562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	80123960	80123960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GNAT3	NM_001102386	exon2	c.C122T	p.A41V	TCTCCTGCTCCTG	.	316.0	103.0	296.0	0.0	.	23
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	9934503	9934503	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GRIN2A	NM_001134407	exon8	c.1651+1G>T	.	CACACACCTAGAA	.	137.0	41.0	138.0	0.0	.	349
GUCY1A2	2977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	106810594	106810594	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GUCY1A2	NM_000855	exon4	c.G798T	p.V266V	CACTTCCACATCC	.	71.0	50.0	88.0	0.0	.	589
HLA-G	3135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	29797329	29797329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	HLA-G	NM_002127	exon5	c.G754T	p.V252L	CAGGACGTGGAGC	.	172.0	44.0	81.0	0.0	.	517
HNRNPK	3190	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86585154	86585154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	HNRNPK	NM_031262	exon16	c.A1284C	p.E428D	GGATCCTTCTAAA	.	46.0	18.0	52.0	1.0	.	227
HOXC6	3223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54423561	54423561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	HOXC6	NM_004503	exon2	c.G523T	p.A175S	GAGATCGCCAACG	.	50.0	25.0	86.0	0.0	.	93
HTRA2	27429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74757927	74757927	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	HTRA2	NM_013247	exon2	c.A690G	p.A230A	CATCGCAACGCTG	.	49.0	25.0	64.0	0.0	.	91
IFNA14	3448	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	21239412	21239412	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	IFNA14	NM_002172	exon1	c.523delC	p.L175fs	AAGAGAGGGATCT	.	130.0	45.0	159.0	0.0	.	68
IL23R	149233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67724414	67724414	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	IL23R	NM_144701	exon11	c.T1493G	p.L498R	GCCATCTCAGCAA	.	169.0	79.0	257.0	0.0	.	90
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	182323028	182323028	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ITGA4	NM_000885	exon2	c.C303T	p.C101C	GACGTGCGAACAG	.	117.0	44.0	140.0	0.0	.	230
KCNIP2	30819	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	103589645	103589645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	KCNIP2	NM_014591	exon3	c.C224A	p.A75D	GCTGGGGCGGCTA	.	28.0	13.0	39.0	0.0	.	90
KHDC3L	154288	ucsc.edu;bcgsc.ca	37	6	74073354	74073354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	C6orf221,shoulder,malignant_melanoma,+1	.	NM_001017361	exon3	c.A425G	p.E142G	TCCGGGAGGCCGG	.	29.0	4.0	42.0	1.0	.	.
KIF5A	3798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57971812	57971812	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	KIF5A	NM_004984	exon22	c.C2382A	p.L794L	GACCCTCCACAAC	.	57.0	22.0	83.0	2.0	.	517
KLC4	89953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43039049	43039049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	KLC4	NM_201523	exon9	c.G1246T	p.A416S	GCTGAGGCTGAGA	.	186.0	123.0	107.0	0.0	.	94
KRTAP4-7	100132476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39240735	39240735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_033061	exon1	c.A277C	p.S93R	ATGTCCAGCTGCT	.	40.0	34.0	21.0	0.0	.	.
L3MBTL3	84456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130374111	130374111	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	L3MBTL3	NM_032438	exon7	c.A557C	p.D186A	AGGAGGATGGAGA	.	72.0	61.0	81.0	0.0	.	96
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	59284530	59284539	+	Frame_Shift_Del	DEL	AAACTCTTTC	AAACTCTTTC	-	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	AAACTCTTTC	AAACTCTTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	LRIG3	NM_153377	exon4	c.423_432del	p.141_144del	GGACTGAAACTCT	.	49.0	12.0	86.0	0.0	.	229
LRP12	29967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	105511591	105511591	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	LRP12	NM_013437	exon4	c.G429T	p.S143S	GTCATCCGAATGA	.	147.0	41.0	96.0	0.0	.	90
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141665624	141665624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	LRP1B	NM_018557	exon22	c.G3342T	p.W1114C	ACACACCCATGCT	.	183.0	96.0	151.0	0.0	.	311
MAGEL2	54551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23889234	23889234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_019066	exon1	c.C3656T	p.A1219V	GCGAGCGCTTCAA	.	67.0	35.0	81.0	0.0	.	.
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	168806927	168806927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	MECOM	NM_004991	exon16	c.A3446G	p.H1149R	CTTATATGATCTA	.	123.0	74.0	111.0	0.0	.	853
MEGF10	84466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	126774132	126774132	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	MEGF10	NM_032446	exon18	c.A2106C	p.P702P	TTCAGCATGTCCA	.	95.0	28.0	76.0	0.0	.	94
MICAL2	9645	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	12183718	12183718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	MICAL2	NM_014632	exon3	c.G16T	p.D6Y	AACGAGGATGAGA	.	84.0	61.0	92.0	1.0	.	92
MIS18BP1	55320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45693923	45693923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	MIS18BP1	NM_018353	exon11	c.A1867G	p.I623V	TATCAATGGATAC	.	63.0	15.0	66.0	0.0	.	90
NAV1	89796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201752875	201752875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NAV1	NM_020443	exon7	c.G2699A	p.S900N	TCCCCAGCAGTAC	.	111.0	34.0	57.0	0.0	.	228
NCEH1	57552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172351796	172351796	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NCEH1	NM_001146276	exon5	c.A816G	p.P272P	ATAAGATGGTGTG	.	134.0	42.0	121.0	0.0	.	90
NFKBIA	4792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35871694	35871694	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NFKBIA	NM_020529	exon5	c.A812T	p.Q271L	GTCAGCTGGCCCA	.	91.0	35.0	106.0	0.0	.	721
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56372857	56372857	+	Silent	SNP	C	C	A	rs200258143	alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NLRP4	NM_134444	exon4	c.C1962A	p.T654T	GTCGACCTTTGTG	.	43.0	20.0	85.0	0.0	C|0.999;G|0.000	216
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44573141	44573141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NPC1L1	NM_001101648	exon8	c.G2298A	p.M766I	AGCTGGCATGGGG	.	190.0	112.0	188.0	0.0	.	94
NPFFR1	64106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72015502	72015502	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NPFFR1	NM_022146	exon4	c.G504T	p.L168L	CAGCGCCAGGGCC	.	97.0	32.0	105.0	0.0	.	22
NR4A3	8013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	102595735	102595735	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NR4A3	NM_173200	exon6	c.G1286C	p.R429T	ATTCCAGAGTAAG	.	108.0	48.0	123.0	0.0	.	186
OR10H1	26539	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	15918704	15918704	+	Silent	SNP	G	G	A	rs61729383	byfrequency	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	OR10H1	NM_013940	exon1	c.C144T	p.T48T	CCAGACGGTGGCC	.	63.0	23.0	138.0	0.0	G|0.810;A|0.190	68
OR2T12	127064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248458206	248458206	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	OR2T12	NM_001004692	exon1	c.C675T	p.L225L	GCGCATGAGCAGA	.	497.0	188.0	322.0	0.0	.	71
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30724307	30724307	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PCDH7	NM_032457	exon1	c.G1263T	p.G421G	GATTGGGCGCATC	.	150.0	57.0	189.0	0.0	.	229
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140798888	140798888	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PCDHGB7	NM_018927	exon1	c.T1462G	p.S488A	CGTGTCTCCTACT	.	111.0	50.0	86.0	0.0	.	29
PCGF6	84108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105104793	105104793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PCGF6	NM_001011663	exon6	c.T770C	p.L257P	AACTCCAGTAATA	.	142.0	44.0	171.0	0.0	.	226
PDCD2L	84306	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	34895344	34895344	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PDCD2L	NM_032346	exon1	c.C9G	p.A3A	GGCGGCCGTTCTG	.	20.0	7.0	39.0	0.0	.	91
PDE3A	5139	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20807109	20807109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PDE3A	NM_000921	exon15	c.G3154A	p.E1052K	AATGAAGAGGAAA	.	95.0	43.0	149.0	1.0	.	94
PDHA2	5161	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96762058	96762058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PDHA2	NM_005390	exon1	c.G757A	p.D253N	AAGGTCGATGGAA	.	39.0	21.0	69.0	1.0	.	90
POLR1A	25885	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86265979	86265979	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	POLR1A	NM_015425	exon27	c.T3878G	p.V1293G	TGCAACACCTGGA	.	55.0	24.0	92.0	2.0	.	93
PPM1F	9647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22277762	22277762	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PPM1F	NM_014634	exon8	c.G1068A	p.L356L	GGCAAGCAGCAGG	.	139.0	52.0	106.0	0.0	.	292
PRF1	5551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72360312	72360312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PRF1	NM_001083116	exon2	c.C347A	p.A116D	GCCACAGCTTCAG	.	65.0	20.0	88.0	0.0	.	578
PRKCSH	5589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11553327	11553327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PRKCSH	NM_001001329	exon7	c.G595A	p.E199K	CTGTGGGAAGGTA	.	40.0	16.0	66.0	0.0	.	90
PRRX1	5396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	170633465	170633465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PRRX1	NM_006902	exon1	c.G106T	p.V36F	TTCTCCGTCAGTC	.	356.0	209.0	259.0	0.0	.	659
PTCHD1	139411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23410846	23410846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PTCHD1	NM_173495	exon3	c.G1211A	p.C404Y	TCTGCTGCAATTC	.	45.0	40.0	69.0	0.0	.	135
PTN	5764	broad.mit.edu;ucsc.edu	37	7	136936111	136936111	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PTN	NM_002825	exon4	c.G317A	p.W106X	TCTCCCCAGGCCT	.	123.0	39.0	142.0	1.0	.	516
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47449186	47449186	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PTPN23	NM_015466	exon13	c.1004-1G>T	.	CCCCCAGGAGCCC	.	91.0	54.0	91.0	0.0	.	227
QRFPR	84109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122251638	122251638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	QRFPR	NM_198179	exon5	c.G838T	p.A280S	AGAGAGCCACCAC	.	64.0	27.0	119.0	0.0	.	90
RAD54B	25788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95399347	95399347	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	RAD54B	NM_012415	exon11	c.A1850G	p.K617R	AGACTCTTTTCTT	.	92.0	54.0	55.0	0.0	.	539
RGS3	5998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116268749	116268749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	RGS3	NM_144488	exon13	c.G1061A	p.C354Y	GGAAATGTGTGGA	.	176.0	64.0	307.0	0.0	.	227
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134988645	134988645	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SAGE1	NM_018666	exon7	c.C671G	p.T224S	TGTTGACTCTTCG	.	96.0	89.0	134.0	0.0	.	133
SCNN1G	6340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23226546	23226546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SCNN1G	NM_001039	exon13	c.C1706A	p.A569D	AGAAAGCCAAGGA	.	64.0	43.0	53.0	0.0	.	158
SEMA3B	7869	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	50313044	50313044	+	RNA	SNP	G	G	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SEMA3B	.	.	.	.	GCTCCGGAGGTGA	.	159.0	43.0	189.0	0.0	.	840
SH3RF1	57630	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	170077719	170077719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SH3RF1	NM_020870	exon3	c.G505A	p.E169K	AATTTTCATCCAC	.	93.0	36.0	140.0	1.0	.	567
SHANK2	22941	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	70666634	70666634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SHANK2	.	.	.	.	AGGCTGCGGTGCG	.	45.0	15.0	62.0	0.0	.	94
SMAD9	4093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	37446983	37446983	+	Missense_Mutation	SNP	C	C	A	rs200651392	alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SMAD9	NM_005905	exon3	c.G482T	p.R161L	GCGCTGCGGAACT	.	65.0	22.0	89.0	0.0	C|0.999;T|0.001	414
TBL1Y	90665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	6939610	6939610	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_134258	exon10	c.A742C	p.T248P	GATGGAACACTAT	.	38.0	34.0	94.0	0.0	.	.
TIMM50	92609	ucsc.edu;bcgsc.ca	37	19	39972655	39972655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TIMM50	NM_001001563	exon2	c.A550G	p.S184G	ACTGTGAGCGTCG	.	37.0	5.0	44.0	0.0	.	91
TMC3	342125	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	81637267	81637267	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TMC3	NM_001080532	exon13	c.G1358C	p.W453S	GTGGACCATTTCT	.	148.0	13.0	155.0	0.0	.	70
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19049311	19049311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TMC7	NM_024847	exon8	c.G1121A	p.G374E	TTTTAGGGGCATG	.	80.0	26.0	108.0	0.0	.	93
TRIP11	9321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92472209	92472209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TRIP11	NM_004239	exon11	c.C2111A	p.S704Y	TCCAGAGAAAGCT	.	114.0	40.0	131.0	0.0	.	1400
TRIP4	9325	hgsc.bcm.edu;bcgsc.ca	37	15	64686298	64686298	+	Missense_Mutation	SNP	G	G	T	rs115051562	byfrequency;alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TRIP4	NM_016213	exon2	c.G255T	p.Q85H	GCAGCAGTGCTTC	.	155.0	8.0	180.0	0.0	G|0.986;A|0.014	188
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179496878	179496878	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TTN	NM_001267550	exon236	c.G43743A	p.V14581V	ACCAAGCACAGTG	.	59.0	32.0	64.0	0.0	.	636
TUBB	203068	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30691141	30691162	+	Frame_Shift_Del	DEL	GGGCCAAAGGCCACTACACAGA	GGGCCAAAGGCCACTACACAGA	-	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	GGGCCAAAGGCCACTACACAGA	GGGCCAAAGGCCACTACACAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TUBB	NM_178014	exon4	c.302_323del	p.101_108del	ACAACTGGGCCAA	.	295.0	38.0	192.0	0.0	.	91
UBOX5	22888	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3102887	3102887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	UBOX5	NM_014948	exon3	c.A398G	p.H133R	CCCCTGTGGCTAA	.	47.0	25.0	92.0	1.0	.	227
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216173882	216173882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	USH2A	NM_206933	exon33	c.C6348G	p.H2116Q	AAACTGGTGGGGT	.	119.0	39.0	87.0	0.0	.	115
UST	10090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	149285691	149285691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	UST	NM_005715	exon5	c.C673A	p.R225S	GAGGAGCGCTACC	.	56.0	50.0	76.0	0.0	.	92
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22149725	22149725	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	VWA3A	NM_173615	exon22	c.A2184G	p.V728V	AAAAGTACTGGGA	.	62.0	37.0	85.0	0.0	.	1
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68273376	68273376	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZFYVE26	NM_015346	exon6	c.A903G	p.L301L	AGGATCTAGATGA	.	80.0	47.0	95.0	0.0	.	162
ZIM3	114026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57647323	57647323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZIM3	NM_052882	exon5	c.C382T	p.P128S	CCAGTGGAAGTAT	.	84.0	40.0	146.0	0.0	.	92
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27419760	27419760	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF184	NM_007149	exon6	c.A1578G	p.Q526Q	TTTCTCTTGAGTA	.	107.0	28.0	51.0	0.0	.	91
ZNF202	7753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	123600474	123600474	+	Silent	SNP	C	C	A	rs143645376	byfrequency;alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF202	NM_003455	exon5	c.G462T	p.V154V	AGGCTCCACTCCT	.	51.0	11.0	72.0	0.0	C|0.998;T|0.002	91
ZNF23	7571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	71482852	71482852	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF23	NM_145911	exon6	c.C1076G	p.T359R	TCTCCTGTGTGGA	.	60.0	23.0	77.0	0.0	.	90
ZNF417	147687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58420786	58420786	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF417	NM_152475	exon3	c.A860T	p.Q287L	ACTCGCTGATGTT	.	188.0	72.0	270.0	0.0	.	90
ZNF507	22847	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	32845521	32845524	+	Frame_Shift_Del	DEL	AGAA	AGAA	-	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	AGAA	AGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF507	NM_001136156	exon3	c.1785_1788del	p.595_596del	ATTGAGAGAAAGG	.	72.0	37.0	116.0	0.0	.	230
ZNF793	390927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38028629	38028629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF793	NM_001013659	exon8	c.C1069T	p.H357Y	AATAAACATTGGA	.	51.0	18.0	98.0	0.0	.	68
ZSCAN18	65982	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58597611	58597611	+	Silent	SNP	G	G	A	rs147947490	byfrequency;alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZSCAN18	NM_001145542	exon6	c.C936T	p.D312D	GGCAGCGTCAGGC	.	102.0	48.0	208.0	0.0	G|0.993;C|0.007	90
KCNH5	27133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	63174666	63174667	+	Missense_Mutation	DNP	CC	CC	AG	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	.	.	.	p.ED842DY	TGGGGTCCTCAGA	.	117.0	66.0	111.0	0.0	.	.
PCDHB2	56133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140476384	140476385	+	Missense_Mutation	DNP	GC	GC	TG	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	.	.	.	p.QP670HA	CTCCCAGCCCTAC	.	22.0	9.0	17.0	0.0	.	.