Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq A2ML1 144568 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 9020503 9020503 + Silent SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . A2ML1 NM_144670 exon30 c.G3783A p.E1261E TGAGGAGATCAAC . 244.0 89.0 216.0 2.0 . 93 ABCD2 225 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 39973407 39973407 + Missense_Mutation SNP T T A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ABCD2 NM_005164 exon8 c.A1807T p.M603L AGTCCATAACAGC . 64.0 36.0 24.0 0.0 . 95 ADAMTS20 80070 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 43769288 43769288 + Missense_Mutation SNP A A T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ADAMTS20 NM_025003 exon36 c.T5340A p.F1780L CCCATTAAAAGGA . 314.0 16.0 269.0 0.0 . 795 ADCY2 108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 7773143 7773143 + Silent SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ADCY2 NM_020546 exon18 c.G2313A p.V771V CTTGGTGGGCTAC . 412.0 186.0 382.0 0.0 . 97 ADCY5 111 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 123166600 123166600 + Missense_Mutation SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ADCY5 NM_183357 exon1 c.C793A p.P265T GGAGCGGGGGCCG . 67.0 17.0 50.0 0.0 . 94 ADCY8 114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 8 131793001 131793001 + Nonsense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ADCY8 NM_001115 exon18 c.C3391T p.Q1131X GGACTTGGATCCG . 127.0 35.0 93.0 0.0 . 157 AGBL1 123624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 86810275 86810275 + Silent SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . . NM_152336 exon12 c.A1668G p.S556S TGAGTCAGGAAAT . 260.0 144.0 290.0 0.0 . . AHCTF1 25909 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 247024552 247024553 + Frame_Shift_Ins INS - - T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . AHCTF1 NM_015446 exon29 c.3808_3809insA p.C1270fs CTGCACATTTTTT . 903.0 217.0 424.0 0.0 . 97 ANKHD1 54882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 139915024 139915024 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ANKHD1 NM_017747 exon30 c.G6928A p.G2310R ATACCAGGAACAA . 288.0 115.0 252.0 0.0 . 185 AP2B1 163 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 33925274 33925274 + Missense_Mutation SNP A A T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . AP2B1 NM_001282 exon3 c.A63T p.E21D AGCTGAACTCAAC . 180.0 77.0 138.0 0.0 . 91 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 21228862 21228862 + Silent SNP A A C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . APOB NM_000384 exon26 c.T10878G p.T3626T GTTCTTAGTGTTA . 350.0 115.0 273.0 0.0 . 175 AQR 9716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 35212596 35212596 + Missense_Mutation SNP C C A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . AQR NM_014691 exon14 c.G1158T p.L386F TGGCAACAAGCAG . 69.0 33.0 76.0 0.0 . 135 ARHGAP22 58504 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 49661391 49661391 + Missense_Mutation SNP T T C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ARHGAP22 NM_001256024 exon8 c.A992G p.N331S AGAATGTTAGGTC . 282.0 17.0 244.0 0.0 . 228 ARHGAP33 115703 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 36278140 36278140 + Silent SNP G G A rs200811520 TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ARHGAP33 NM_001172630 exon20 c.G2265A p.P755P ACCCCCGCCCCCT . 67.0 30.0 47.0 0.0 G|0.999;A|0.000 229 ARL8A 127829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 202104642 202104642 + Missense_Mutation SNP C C G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ARL8A NM_138795 exon5 c.G385C p.G129R TGTTACCCAGGAC . 155.0 40.0 114.0 0.0 . 229 ASB6 140459 ucsc.edu;bcgsc.ca 37 9 132400355 132400355 + Missense_Mutation SNP T T C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ASB6 NM_017873 exon6 c.A980G p.E327G ACAGTCTCAGCTT . 43.0 4.0 52.0 0.0 . 226 ATL1 51062 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 51087446 51087446 + Splice_Site SNP T T A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ATL1 NM_001127713 exon10 c.990+2T>A . TCAAGGTATCACT . 94.0 45.0 120.0 1.0 . 93 ATP13A5 344905 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 193028474 193028474 + Missense_Mutation SNP C C A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ATP13A5 NM_198505 exon21 c.G2478T p.M826I AGGAGACATTCTT . 167.0 10.0 154.0 0.0 . 144 ATP4A 495 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 36047867 36047867 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ATP4A NM_000704 exon12 c.C1817T p.P606L GCCCGGGGTGGGT . 126.0 10.0 84.0 0.0 . 91 ATP5EP2 432369 ucsc.edu;mdanderson.org 37 13 28519559 28519559 + RNA SNP C C G rs192325513 by1000genomes;alternate_allele TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ATP5EP2 . . . . TCTACCCTGACTA . 318.0 250.0 331.0 0.0 C|0.999;T|0.000 1 ATP6AP1 537 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153657461 153657461 + Missense_Mutation SNP T T A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ATP6AP1 NM_001183 exon2 c.T229A p.Y77N TCTACCTACTTAG . 197.0 33.0 268.0 0.0 . 138 ATRNL1 26033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 117607492 117607492 + Silent SNP T T A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ATRNL1 NM_207303 exon28 c.T4008A p.P1336P TCCCCCTGGGCAG . 229.0 70.0 207.0 0.0 . 96 BTBD6 90135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 105716439 105716439 + Silent SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . BTBD6 NM_033271 exon5 c.C888T p.G296G CAACGGCGCTGCC . 41.0 25.0 48.0 0.0 . 90 BZW1 9689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 201677965 201677965 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . BZW1 NM_001207068 exon2 c.C121T p.P41S CAAAAGCCAACGC . 117.0 62.0 98.0 0.0 . 90 C16orf96 342346 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 4641701 4641701 + Missense_Mutation SNP A A T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . . NM_001145011 exon10 c.A2627T p.E876V AGAAAGAAATGGA . 338.0 52.0 264.0 0.0 . . C5orf28 64417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 43446540 43446540 + Silent SNP A A C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . C5orf28 NM_022483 exon3 c.T432G p.L144L CCAGGGAAGAAAG . 214.0 13.0 195.0 0.0 . 90 C6orf57 135154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 71298368 71298368 + Missense_Mutation SNP G G C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . C6orf57 NM_145267 exon3 c.G268C p.G90R CCCAGGGGCCCAG . 281.0 120.0 262.0 0.0 . 90 CDH6 1004 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 31297484 31297484 + Silent SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . CDH6 NM_004932 exon4 c.A612G p.G204G ACAGGGACAGCCC . 294.0 124.0 220.0 1.0 . 159 CDK14 5218 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 90355912 90355912 + Missense_Mutation SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . CDK14 NM_012395 exon2 c.G101T p.C34F GGAACTGCCAGGG . 194.0 11.0 180.0 0.0 . 970 CHAC1 79094 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 15 41247963 41247963 + Silent SNP G G A rs147315683 bycluster;byfrequency;by1000genomes TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . CHAC1 NM_024111 exon3 c.G786A p.A262A TCTGGCGCTGGTG . 30.0 9.0 18.0 0.0 G|0.999;A|0.001 90 CHD6 84181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 40049753 40049753 + Missense_Mutation SNP T T A rs140430642 alternate_allele TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . CHD6 NM_032221 exon31 c.A5522T p.D1841V TGCTGATCTGATG . 89.0 54.0 116.0 0.0 T|1.000;C|0.000 238 CHPF 79586 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 220404778 220404778 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . CHPF NM_024536 exon4 c.G1655A p.R552H GCCTGGCGCGGCT . 33.0 13.0 55.0 1.0 . 90 CLEC1B 51266 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 10150973 10150973 + Missense_Mutation SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . CLEC1B NM_016509 exon2 c.C71A p.S24Y GATGCAGAGCCAA . 244.0 11.0 238.0 0.0 . 90 CNKSR2 22866 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 21550127 21550127 + Silent SNP T T C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . CNKSR2 NM_001168647 exon11 c.T1245C p.Y415Y TTGCTATGAATAT . 346.0 66.0 354.0 0.0 . 625 COL28A1 340267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 7571014 7571014 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . COL28A1 NM_001037763 exon3 c.G646A p.D216N TTGGATCACTCAA . 148.0 50.0 124.0 0.0 . 93 COL4A1 1282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 110804702 110804702 + Missense_Mutation SNP A A G rs201012509 TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . COL4A1 NM_001845 exon51 c.T4907C p.I1636T CTCTCTATGGTGG . 142.0 53.0 99.0 0.0 A|0.999;G|0.000 654 COL4A5 1287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 107834827 107834827 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . COL4A5 NM_000495 exon21 c.C1376T p.P459L GCCCCCCAGGATC . 566.0 150.0 735.0 0.0 . 133 COPS8 10920 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 237998516 237998516 + Silent SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . COPS8 NM_006710 exon4 c.A210G p.E70E TTCTGAACTTGGG . 79.0 42.0 157.0 0.0 . 228 CRLF1 9244 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 18709391 18709391 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . CRLF1 NM_004750 exon4 c.C548T p.T183I TCACATGTGTTGT . 198.0 44.0 115.0 1.0 . 514 CYP2C18 1562 ucsc.edu;bcgsc.ca;mdanderson.org 37 10 96493059 96493059 + Silent SNP G G T rs114879149 byfrequency;alternate_allele TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . CYP2C18 NM_000772 exon8 c.G1155T p.T385T GGGCACGACCATA . 291.0 42.0 266.0 1.0 G|0.996;A|0.004 95 DCT 1638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 95131263 95131263 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 DCT,mouth,carcinoma,+1 DCT NM_001129889 exon1 c.C247T p.R83C GCTCACGGTCATC . 101.0 48.0 99.0 0.0 . 94 DGAT1 8694 broad.mit.edu;mdanderson.org 37 8 145540247 145540247 + Silent SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . . NM_012079 exon17 c.C1437T p.L479L ATAGTTGAGCACG . 65.0 30.0 54.0 1.0 . . DNAH10 196385 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 124399402 124399402 + Missense_Mutation SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . DNAH10 NM_207437 exon61 c.G10224T p.W3408C CAGATGGGGATCC . 130.0 21.0 95.0 0.0 . 95 DNAH7 56171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 196674472 196674472 + Silent SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . DNAH7 NM_018897 exon52 c.G9885A p.R3295R GACCGCCCGCTCA . 515.0 160.0 283.0 0.0 . 102 DNHD1 144132 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 6566486 6566486 + Silent SNP T T A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . DNHD1 NM_144666 exon21 c.T4317A p.P1439P CCTTCCTCTGCAT . 53.0 12.0 77.0 0.0 . 24 DNM3 26052 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 172100413 172100413 + Missense_Mutation SNP G G C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . DNM3 NM_001136127 exon14 c.G1644C p.W548C GTCCTGGTATAAA . 231.0 80.0 132.0 0.0 . 90 DOC2A 8448 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 30018188 30018188 + Silent SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . DOC2A NM_003586 exon8 c.C796A p.R266R GTCCCCGGCGCCG . 68.0 8.0 51.0 0.0 . 92 DOCK11 139818 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 117752664 117752664 + Missense_Mutation SNP T T G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . DOCK11 NM_144658 exon31 c.T3444G p.H1148Q AAAACATGCATTT . 365.0 35.0 377.0 0.0 . 93 DUSP8 1850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 1586842 1586842 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . DUSP8 NM_004420 exon2 c.C215T p.P72L GCAGCCGGCTGGA . 108.0 23.0 126.0 0.0 . 226 EFCAB6 64800 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 44112732 44112732 + Frame_Shift_Del DEL A A - novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . EFCAB6 NM_022785 exon9 c.878delT p.L293fs ACTTGTAGACAAA . 299.0 117.0 430.0 0.0 . 97 EGFLAM 133584 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 38406944 38406944 + Silent SNP T T A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . EGFLAM NM_001205301 exon8 c.T843A p.P281P ACTTCCTGCTACC . 338.0 21.0 319.0 0.0 . 187 EMCN 51705 broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 101401081 101401081 + Silent SNP A A T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . EMCN NM_001159694 exon2 c.T180A p.T60T TTTAGGAGTTGTT . 723.0 49.0 902.0 0.0 . 90 EPN3 55040 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 48617654 48617654 + Missense_Mutation SNP C C T rs142210765 TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . EPN3 NM_017957 exon6 c.C938T p.P313L TGGCCCCGCCCTC . 67.0 7.0 58.0 0.0 C|1.000;T|0.000 91 ETV3L 440695 broad.mit.edu;bcgsc.ca 37 1 157062526 157062526 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ETV3L NM_001004341 exon5 c.C1001T p.T334I CTGCGGGTCTCTG . 367.0 18.0 197.0 1.0 . 228 FAM174B 400451 broad.mit.edu;bcgsc.ca 37 15 93198581 93198581 + Silent SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . FAM174B NM_207446 exon1 c.C309A p.T103T GAGGAGGGTGGTA . 92.0 8.0 100.0 0.0 . 90 FAM208A 23272 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 56681065 56681065 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . . NM_001112736 exon14 c.G1700A p.G567D CCTGAACCAAAAC . 189.0 93.0 194.0 0.0 . . FAM47B 170062 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 34962850 34962850 + Silent SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . FAM47B NM_152631 exon1 c.C1902T p.Y634Y CAAGTACAAAGAA . 212.0 15.0 244.0 0.0 . 196 FAM53C 51307 ucsc.edu;bcgsc.ca 37 5 137681160 137681160 + Silent SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . FAM53C NM_001135647 exon4 c.A783G p.R261R CTGGCGACCTCGA . 46.0 4.0 40.0 0.0 . 91 FASN 2194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 17 80047248 80047248 + Nonsense_Mutation SNP C C A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . FASN NM_004104 exon13 c.G1978T p.E660X CGAACTCAAACAC . 120.0 19.0 74.0 0.0 . 90 FAT3 120114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 92565042 92565042 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . FAT3 NM_001008781 exon13 c.C9736T p.P3246S ACGGTGCCTGAGG . 76.0 21.0 129.0 0.0 . 73 FBF1 85302 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 73915917 73915917 + Missense_Mutation SNP C C A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . FBF1 NM_001080542 exon19 c.G1925T p.R642L TCCTCCCGTTGCT . 137.0 51.0 110.0 0.0 . 205 FBXL19 54620 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 16 30958514 30958514 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . FBXL19 NM_001099784 exon11 c.G2048A p.R683H CCTTCCGCTGCCC . 24.0 9.0 14.0 0.0 . 661 FMNL2 114793 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 153496548 153496548 + Missense_Mutation SNP T T A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . FMNL2 NM_052905 exon24 c.T3023A p.L1008Q AAGCTCTGATGGA . 491.0 246.0 342.0 0.0 . 516 FOXG1 2290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 29237217 29237217 + Silent SNP C C A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . FOXG1 NM_005249 exon1 c.C732A p.R244R GCCGCGCCACTAC . 91.0 23.0 126.0 0.0 . 660 FOXS1 2307 broad.mit.edu;bcgsc.ca 37 20 30432421 30432421 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . FOXS1 NM_004118 exon1 c.G925A p.G309S CGGAGCCTCCCTG . 235.0 12.0 138.0 1.0 . 69 FRS3 10817 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 41738507 41738507 + Missense_Mutation SNP C C A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . FRS3 NM_006653 exon7 c.G1329T p.M443I GGTGGGCATGGGG . 59.0 22.0 72.0 0.0 . 92 FSIP1 161835 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 39909936 39909936 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . FSIP1 NM_152597 exon11 c.G1699A p.D567N CCTCACCTGCTAT . 101.0 54.0 126.0 0.0 . 517 G3BP2 9908 broad.mit.edu;bcgsc.ca 37 4 76572314 76572314 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . G3BP2 NM_012297 exon10 c.C956T p.S319F TTGTCAGAGTCAT . 269.0 11.0 172.0 1.0 . 153 GABRA3 2556 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 151393310 151393310 + Missense_Mutation SNP T T C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . GABRA3 NM_000808 exon6 c.A559G p.I187V CATGAATTGTTAA . 702.0 199.0 854.0 0.0 . 131 GALNT4 8693 broad.mit.edu;bcgsc.ca 37 12 89917584 89917584 + Missense_Mutation SNP T T C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . . NM_003774 exon1 c.A743G p.E248G GCTGTTTCATCTC . 166.0 7.0 166.0 0.0 . . GDAP2 54834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 118454654 118454654 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . GDAP2 NM_017686 exon5 c.G521A p.R174H TAACCACGTTTTG . 354.0 273.0 433.0 0.0 . 92 GPR98 84059 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 89933635 89933635 + Missense_Mutation SNP C C A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . GPR98 NM_032119 exon11 c.C2110A p.P704T GTGACCCCGGATG . 144.0 12.0 106.0 0.0 . 103 HIST1H2BB 3018 broad.mit.edu;bcgsc.ca 37 6 26043596 26043596 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . HIST1H2BB NM_021062 exon1 c.C290T p.T97M ACAGCCGTCTGAA . 175.0 12.0 160.0 1.0 . 90 HTR2C 3358 broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 113965762 113965762 + Missense_Mutation SNP C C G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . HTR2C NM_000868 exon4 c.C95G p.A32G TAGCAGCTATAGT . 615.0 40.0 745.0 2.0 . 133 HTR3D 200909 broad.mit.edu;bcgsc.ca 37 3 183753882 183753882 + Missense_Mutation SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . HTR3D NM_001163646 exon3 c.A374G p.E125G TCATCGAGGAGTC . 140.0 9.0 127.0 0.0 . 90 HTT 3064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 3230361 3230361 + Missense_Mutation SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . HTT NM_002111 exon58 c.G7868T p.W2623L CCGTGTGGCTGGG . 80.0 38.0 57.0 0.0 . 281 IL9 3578 broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 135231424 135231424 + Silent SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . IL9 NM_000590 exon1 c.C82T p.L28L TGTCCAGGATCCC . 250.0 22.0 216.0 1.0 . 90 INADL 10207 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 62237159 62237159 + Missense_Mutation SNP A A T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . INADL NM_176877 exon6 c.A581T p.D194V CATTGGATCAGAA . 753.0 83.0 829.0 1.0 . 94 INF2 64423 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 105174811 105174811 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . INF2 NM_022489 exon9 c.G1774A p.A592T CCCGACGCCGAGG . 85.0 15.0 84.0 0.0 . 492 INSRR 3645 broad.mit.edu;bcgsc.ca 37 1 156828412 156828412 + Missense_Mutation SNP A A T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . INSRR NM_014215 exon1 c.T2A p.M1K ACTGCCATTGTCC . 193.0 8.0 112.0 0.0 . 1403 INTS8 55656 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 95839952 95839952 + Missense_Mutation SNP C C A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . INTS8 NM_017864 exon4 c.C449A p.A150E TCAGGGCAATTAG . 271.0 11.0 173.0 0.0 . 90 ITGAD 3681 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 31426269 31426269 + Missense_Mutation SNP G G A rs200483957 TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ITGAD NM_005353 exon18 c.G2240A p.R747H ACCTGCGTCCTGT . 110.0 50.0 92.0 0.0 . 226 ITPR1 3708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 4726834 4726834 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ITPR1 NM_001099952 exon30 c.C3619T p.R1207W CTGCTCCGGAACA . 70.0 30.0 90.0 0.0 . 710 KANSL3 55683 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 97285440 97285440 + Missense_Mutation SNP G G C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . . NM_001115016 exon4 c.C446G p.S149C CGGTCAGACTGCA . 302.0 158.0 229.0 0.0 . . KCNV2 169522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 2718691 2718691 + Silent SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . KCNV2 NM_133497 exon1 c.C952T p.L318L GAGTACCTGCTGC . 97.0 9.0 113.0 0.0 . 515 KEL 3792 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 142639989 142639989 + Silent SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . KEL NM_000420 exon17 c.C1914T p.D638D CCCAACGTCTGCA . 147.0 8.0 121.0 0.0 . 93 KIRREL 55243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158059385 158059385 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . KIRREL NM_018240 exon9 c.G1138A p.V380M ATCGGAGTGGCTG . 174.0 47.0 85.0 0.0 . 91 LAMC1 3915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 183085929 183085929 + Silent SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . LAMC1 NM_002293 exon8 c.A1455G p.E485E TCTGGAATCATCT . 572.0 150.0 293.0 0.0 . 252 LEPREL1 55214 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 189700835 189700835 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . LEPREL1 NM_018192 exon8 c.G1324A p.G442S ACTTACCTTCTCT . 365.0 21.0 396.0 0.0 . 155 LHCGR 3973 broad.mit.edu;bcgsc.ca 37 2 48914906 48914906 + Missense_Mutation SNP G G C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . LHCGR NM_000233 exon11 c.C2030G p.T677S TTCAAGGTGGATT . 227.0 11.0 215.0 0.0 . 589 LRP1 4035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 57599015 57599015 + Missense_Mutation SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . LRP1 NM_002332 exon73 c.A11318G p.E3773G CTGACGAGGAGGA . 75.0 19.0 69.0 0.0 . 596 LRRK2 120892 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 40745384 40745384 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . LRRK2 NM_198578 exon44 c.G6425A p.R2142K TGACGAGACGCAT . 179.0 10.0 195.0 0.0 . 533 LTN1 26046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 30354673 30354673 + Silent SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . LTN1 NM_015565 exon5 c.T732C p.L244L TTTTATAAGATGA . 182.0 87.0 101.0 0.0 . 530 LYZL1 84569 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 29599920 29599920 + Missense_Mutation SNP C C A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . LYZL1 NM_032517 exon5 c.C517A p.Q173K CTCAGGCAAGGCT . 195.0 104.0 159.0 0.0 . 90 MAPKBP1 23005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 42115228 42115228 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MAPKBP1 NM_001128608 exon29 c.G3424A p.A1142T AATGGTGCCAATC . 61.0 31.0 60.0 0.0 . 589 MB21D1 115004 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 74161889 74161889 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MB21D1 NM_138441 exon1 c.G16A p.G6R CCTTTCCGTGCCA . 110.0 25.0 69.0 0.0 . 90 MCF2L2 23101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 183056602 183056602 + Missense_Mutation SNP T T G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MCF2L2 NM_015078 exon5 c.A472C p.K158Q TCGTTTTAAACTC . 147.0 51.0 151.0 0.0 . 293 MDFIC 29969 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 114655974 114655974 + Silent SNP T T C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MDFIC NM_199072 exon5 c.T1053C p.I351I TGGAATTTGTTTT . 267.0 106.0 225.0 0.0 . 91 MERTK 10461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 112786337 112786337 + Missense_Mutation SNP G G C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MERTK NM_006343 exon19 c.G2896C p.G966R AGGAATGGGGTCT . 80.0 28.0 68.0 0.0 . 1463 MKRN1 23608 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 140156621 140156621 + Missense_Mutation SNP C C A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MKRN1 NM_013446 exon5 c.G817T p.V273L GCTGCACGGCAAA . 129.0 44.0 103.0 0.0 . 91 MLH3 27030 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 75513372 75513372 + Frame_Shift_Del DEL C C - novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MLH3 NM_014381 exon2 c.2987delG p.G996fs AGACTTCCTATCT . 269.0 62.0 340.0 0.0 . 228 MS4A6A 64231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 59947427 59947427 + Silent SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MS4A6A NM_001247999 exon4 c.C243A p.I81I ACACAAGATCTGG . 163.0 86.0 158.0 0.0 . 90 MSH3 4437 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 80021280 80021280 + Missense_Mutation SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MSH3 NM_002439 exon9 c.A1349G p.D450G TGCAGGATGACAG . 388.0 16.0 317.0 0.0 . 661 MTMR14 64419 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 9703950 9703950 + Splice_Site SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MTMR14 NM_001077525 exon3 c.309-1G>A . GTGTTAGGTTTGA . 188.0 39.0 204.0 0.0 . 91 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 9074278 9074278 + Nonsense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MUC16 NM_024690 exon3 c.C13168T p.Q4390X CTGTTTGGGTGGT . 395.0 36.0 529.0 0.0 . 566 MUC7 4589 hgsc.bcm.edu;broad.mit.edu 37 4 71346650 71346650 + Nonsense_Mutation SNP T T A rs147746777 alternate_allele TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MUC7 NM_001145007 exon4 c.T189A p.Y63X GTCCTATAAATGT . 273.0 12.0 214.0 0.0 T|1.000;C|0.000 93 MYEF2 50804 broad.mit.edu;mdanderson.org 37 15 48470360 48470360 + Silent SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MYEF2 NM_016132 exon1 c.G75A p.P25P GCCCGGCGGCTCT . 20.0 5.0 12.0 0.0 . 523 MYH11 4629 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 15931795 15931795 + Silent SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MYH11 NM_001040114 exon2 c.G315A p.L105L CTCCCTCAGGTTG . 224.0 102.0 192.0 0.0 . 666 MYO5B 4645 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 47500944 47500944 + Silent SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MYO5B NM_001080467 exon10 c.G1098A p.G366G CTCCACCCCTAGC . 133.0 52.0 105.0 0.0 . 72 MYO6 4646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 76599823 76599823 + Missense_Mutation SNP T T G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MYO6 NM_004999 exon26 c.T2708G p.V903G CACTGGTTAAAAG . 325.0 123.0 273.0 0.0 . 92 MYOM2 9172 ucsc.edu;bcgsc.ca 37 8 2033424 2033424 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MYOM2 NM_003970 exon14 c.G1546A p.G516S CCCACCGGTGTGC . 36.0 4.0 60.0 0.0 . 95 MYT1L 23040 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 1946902 1946902 + Missense_Mutation SNP A A T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . MYT1L NM_015025 exon9 c.T357A p.D119E GTCCTCATCCCCT . 634.0 28.0 546.0 1.0 . 95 NCAM2 4685 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 22664428 22664428 + Silent SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . NCAM2 NM_004540 exon5 c.G486A p.R162R AGATCGGTTCGCT . 489.0 37.0 352.0 0.0 . 94 NFIB 4781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 14307000 14307000 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . NFIB NM_001190738 exon2 c.G628A p.V210M CCTGCACGTAGTA . 157.0 83.0 160.0 0.0 . 226 NFKBIB 4793 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 39395721 39395721 + Silent SNP C C A rs142337920 alternate_allele TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . NFKBIB NM_002503 exon2 c.C246A p.A82A CTCGGCCGGCACT . 326.0 130.0 214.0 0.0 C|1.000;T|0.000 658 NFX1 4799 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 33351695 33351695 + Silent SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . NFX1 NM_147133 exon16 c.G2562A p.Q854Q CAAGCAGCCCTGC . 91.0 16.0 90.0 0.0 . 91 NOS1 4842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 117696859 117696859 + Missense_Mutation SNP C C A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . NOS1 NM_000620 exon15 c.G2444T p.G815V CCATTGCCAAAGG . 161.0 39.0 140.0 0.0 . 154 NOX1 27035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 100105359 100105359 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . NOX1 NM_013955 exon9 c.C914T p.S305F ACTTTGGATGGGT . 183.0 103.0 248.0 0.0 . 131 OR10T2 128360 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 158369189 158369189 + Missense_Mutation SNP T T C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . OR10T2 NM_001004475 exon1 c.A68G p.E23G TGGAGCTCCCCCA . 182.0 17.0 99.0 0.0 . 70 OR5D18 219438 broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 55587248 55587248 + Missense_Mutation SNP T T C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . OR5D18 NM_001001952 exon1 c.T143C p.V48A TGATTGTGATCAT . 475.0 30.0 467.0 1.0 . 71 OR7E24 26648 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 9362317 9362317 + Missense_Mutation SNP T T C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . OR7E24 NM_001079935 exon1 c.T598C p.S200P GACCCTTCTCAAC . 271.0 18.0 309.0 0.0 . 47 OR8K1 390157 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 56113637 56113637 + Silent SNP T T C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . OR8K1 NM_001002907 exon1 c.T123C p.Y41Y CATATATCTGGTC . 343.0 21.0 374.0 0.0 . 70 PAK3 5063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 110439120 110439120 + Silent SNP T T C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . PAK3 NM_001128168 exon13 c.T1269C p.D423D TAGAGATATAAAG . 460.0 239.0 528.0 0.0 . 1043 PAK7 57144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 9525047 9525047 + Missense_Mutation SNP T T A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . PAK7 NM_177990 exon8 c.A1838T p.E613V ATCACCTCAGGGG . 64.0 42.0 134.0 0.0 . 1434 PANX1 24145 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 93911635 93911635 + Missense_Mutation SNP T T C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . PANX1 NM_015368 exon3 c.T422C p.F141S TGAAGTTTATCAT . 234.0 13.0 272.0 0.0 . 68 PDS5A 23244 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 39878616 39878616 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . . NM_001100399 exon19 c.G2150A p.R717Q CACGATCGTATCT . 437.0 30.0 302.0 0.0 . . PDX1 3651 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 13 28498525 28498525 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . PDX1 NM_000209 exon2 c.C539T p.A180V AGCTGGCTGTCAT . 82.0 66.0 104.0 0.0 . 514 PGBD2 267002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 249211815 249211815 + Silent SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . PGBD2 NM_170725 exon3 c.G1032A p.L344L TTTTCTGCCATAT . 386.0 89.0 169.0 0.0 . 91 PGK2 5232 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 49754008 49754008 + Missense_Mutation SNP A A T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . PGK2 NM_138733 exon1 c.T893A p.V298D TTTCCAACCTGAG . 149.0 70.0 162.0 1.0 . 91 PLA2G4A 5321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 186948491 186948491 + Missense_Mutation SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . PLA2G4A NM_024420 exon17 c.G2005T p.D669Y GACTTTGATATTT . 603.0 205.0 401.0 1.0 . 721 POM121L12 285877 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 53104219 53104219 + Silent SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . . NM_182595 exon1 c.C855T p.L285L CGCCCTCGAGGTC . 142.0 80.0 80.0 0.0 . . PPP1R3A 5506 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 113518905 113518905 + Missense_Mutation SNP C C G rs4304271 alternate_allele TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . PPP1R3A NM_002711 exon4 c.G2242C p.E748Q CTTTTTCTCTAGC . 143.0 48.0 121.0 0.0 C|1.000;|0.000 832 PPP6R2 9701 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 50876004 50876004 + Missense_Mutation SNP G G C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . PPP6R2 NM_001242898 exon16 c.G1753C p.E585Q GATGAGGAGTTTG . 86.0 33.0 90.0 0.0 . 92 PTCHD2 57540 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 11562021 11562021 + Missense_Mutation SNP T T G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . PTCHD2 NM_020780 exon2 c.T972G p.D324E CAAGGATCTGCCG . 84.0 11.0 97.0 0.0 . 209 PTGS2 5743 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 186648333 186648333 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . PTGS2 NM_000963 exon3 c.C170T p.P57L AATTCCGCTGCAA . 581.0 35.0 291.0 0.0 . 227 RAB32 10981 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 6 146865246 146865246 + Nonsense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . RAB32 NM_006834 exon1 c.G239A p.W80X AGCTGTGGGACAT . 133.0 17.0 136.0 0.0 . 651 RAG1 5896 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 36597714 36597714 + Missense_Mutation SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . RAG1 NM_000448 exon2 c.G2860T p.G954C AGGGATGGCTCCA . 114.0 45.0 117.0 0.0 . 230 RB1 5925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 13 48881512 48881512 + Nonsense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 RB1,NS,Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour,0 RB1 NM_000321 exon2 c.G234A p.W78X AACTTGGGAGAAA . 235.0 173.0 247.0 0.0 . 3784 RB1CC1 9821 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 53569525 53569525 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . RB1CC1 NM_001083617 exon15 c.G2864A p.R955Q ATTTCTCGTGACT . 356.0 16.0 359.0 0.0 . 170 RBM47 54502 broad.mit.edu;bcgsc.ca 37 4 40440062 40440062 + Silent SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . RBM47 NM_001098634 exon4 c.C849T p.Y283Y GAAGGCGTAGTCG . 156.0 9.0 124.0 0.0 . 25 RDH10 157506 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 74209535 74209535 + Silent SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . RDH10 NM_172037 exon2 c.C396T p.V132V AAGAGTCCGCAAG . 445.0 19.0 252.0 0.0 . 514 RGAG1 57529 broad.mit.edu;bcgsc.ca 37 X 109695251 109695251 + Missense_Mutation SNP T T C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . RGAG1 NM_020769 exon3 c.T1406C p.M469T TAACAATGGCCAA . 137.0 9.0 174.0 0.0 . 132 RHBDL1 9028 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 726998 726998 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . RHBDL1 NM_003961 exon3 c.C649T p.R217C GGGGCCCGCCTCA . 71.0 12.0 73.0 0.0 . 90 RNF13 11342 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 149589886 149589886 + Missense_Mutation SNP C C T rs138683130 TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . RNF13 NM_007282 exon5 c.C266T p.S89L ACAATTCATCTGG . 221.0 36.0 263.0 0.0 C|1.000;T|0.000 227 RNF217 154214 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 125402633 125402633 + Missense_Mutation SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . RNF217 NM_152553 exon7 c.G659T p.G220V CACTAGGGGCCAT . 325.0 30.0 303.0 0.0 . 68 RNF6 6049 broad.mit.edu;bcgsc.ca 37 13 26788012 26788012 + Silent SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . RNF6 NM_183043 exon5 c.T2007C p.C669C GATCGGACAAGTG . 183.0 8.0 242.0 0.0 . 228 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 237905615 237905615 + Missense_Mutation SNP A A T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . RYR2 NM_001035 exon80 c.A11111T p.D3704V AGGAAGATGACGA . 364.0 70.0 219.0 0.0 . 158 SCN3A 6328 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 165948928 165948928 + Missense_Mutation SNP T T C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SCN3A NM_006922 exon27 c.A4643G p.D1548G TGGTCATCCGTTT . 413.0 204.0 368.0 0.0 . 141 SEMA4D 10507 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 91991876 91991876 + Missense_Mutation SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SEMA4D NM_001142287 exon18 c.C1754A p.T585N CAGGGGGTCCAGG . 68.0 20.0 85.0 2.0 . 92 SH3GL1 6455 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 4361758 4361758 + Missense_Mutation SNP C C G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SH3GL1 NM_003025 exon10 c.G946C p.D316H CGAAGTCGTACAG . 50.0 42.0 54.0 0.0 . 659 SH3GL2 6456 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 17787406 17787406 + Silent SNP C C A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SH3GL2 NM_003026 exon5 c.C360A p.A120A GGAGGCCATGCGG . 49.0 9.0 95.0 0.0 . 91 SHANK2 22941 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 70333710 70333710 + Silent SNP C C T rs141694314 by1000genomes TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SHANK2 NM_133266 exon10 c.G924A p.P308P TGGGGACGGGGGC . 125.0 31.0 151.0 0.0 C|0.999;T|0.000 94 SIGLEC1 6614 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 3673312 3673312 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SIGLEC1 NM_023068 exon15 c.C3886T p.H1296Y CGTTGTGGTACCA . 71.0 7.0 41.0 0.0 . 167 SIGLEC1 6614 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 3673732 3673732 + Silent SNP G G A rs144602570 byfrequency TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SIGLEC1 NM_023068 exon14 c.C3555T p.G1185G CTGCCCGCCATGG . 60.0 28.0 30.0 0.0 G|0.999;A|0.001 167 SLC16A6 9120 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 66270184 66270184 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SLC16A6 NM_001174166 exon4 c.G260A p.R87H CCGAAACGATTGC . 57.0 20.0 50.0 0.0 . 90 SLC25A17 10478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 41173261 41173261 + Missense_Mutation SNP T T C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SLC25A17 NM_006358 exon6 c.A568G p.K190E GCCGTTTTAAACC . 195.0 73.0 262.0 0.0 . 90 SLC2A5 6518 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 9097670 9097670 + Missense_Mutation SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SLC2A5 NM_003039 exon12 c.T1481C p.L494P GGTGGAAGCTCTT . 140.0 14.0 148.0 0.0 . 517 SLC37A1 54020 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 43962522 43962522 + Silent SNP C C T rs141486944 byfrequency TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SLC37A1 NM_018964 exon8 c.C495T p.N165N CATCAACGGGCTG . 168.0 34.0 80.0 0.0 C|0.996;T|0.004 90 SLC6A4 6532 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 28530206 28530206 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SLC6A4 NM_001045 exon14 c.C1802T p.P601L GTCCCTGGAGTGA . 196.0 13.0 135.0 0.0 . 94 SLFN11 91607 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 33680372 33680372 + Silent SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SLFN11 NM_152270 exon4 c.T1905C p.P635P CCTCAGAGGCTGG . 697.0 34.0 720.0 1.0 . 159 SMTNL1 219537 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 57317551 57317551 + Missense_Mutation SNP T T G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SMTNL1 NM_001105565 exon7 c.T1451G p.V484G GCCTTGTGCAGAA . 120.0 53.0 137.0 0.0 . 23 SNX13 23161 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 17833732 17833732 + Silent SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SNX13 NM_015132 exon26 c.G2811A p.K937K CATCTGCTTTGAC . 707.0 37.0 463.0 0.0 . 650 SOWAHB 345079 broad.mit.edu;bcgsc.ca 37 4 77817401 77817401 + Silent SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . . NM_001029870 exon1 c.G1602A p.K534K TCCTGCCTTGGAG . 136.0 7.0 114.0 0.0 . . SPOP 8405 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 47677798 47677798 + Missense_Mutation SNP A A T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SPOP NM_001007228 exon10 c.T1067A p.L356Q GAAGCCAGAGAGC . 146.0 69.0 103.0 0.0 . 660 SYCP2 10388 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 20 58467323 58467323 + Nonsense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SYCP2 NM_014258 exon23 c.C2086T p.Q696X TTTGTTGCTGATT . 687.0 327.0 502.0 1.0 . 525 SYNE1 23345 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 152631939 152631939 + Missense_Mutation SNP T T G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SYNE1 NM_182961 exon88 c.A16780C p.T5594P CGCTAGTGAGGTA . 342.0 33.0 363.0 2.0 . 607 SYNE3 161176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 95918595 95918595 + Silent SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . . NM_152592 exon6 c.G1263A p.Q421Q ATACTCCTGGATG . 112.0 29.0 118.0 0.0 . . SYNJ1 8867 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 34067440 34067440 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . SYNJ1 NM_203446 exon5 c.G749A p.R250Q CCAGCTCGTTCAC . 312.0 105.0 174.0 0.0 . 232 TCTN3 26123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 97447351 97447351 + Missense_Mutation SNP T T A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TCTN3 NM_015631 exon4 c.A625T p.R209W TCACCCTGTAAAA . 208.0 117.0 141.0 0.0 . 22 TEK 7010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 27228230 27228230 + Missense_Mutation SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TEK NM_000459 exon22 c.G3227T p.R1076L GCTGGCGGGAGAA . 99.0 27.0 105.0 0.0 . 1584 TENM2 57451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 167643791 167643791 + Missense_Mutation SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . . NM_001122679 exon22 c.A4070G p.N1357S ACAAGAATGGGCT . 267.0 98.0 219.0 0.0 . . TGFBR3 7049 broad.mit.edu;bcgsc.ca 37 1 92187585 92187585 + Silent SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TGFBR3 NM_001195684 exon9 c.T1002C p.N334N ATAGCCATTGTCC . 213.0 14.0 241.0 0.0 . 93 TMC6 11322 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 76120679 76120679 + Missense_Mutation SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TMC6 NM_001127198 exon8 c.C817A p.P273T CCTGAGGGCCCAT . 60.0 22.0 41.0 0.0 . 90 TMED10 10972 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 75614379 75614379 + Missense_Mutation SNP T T G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TMED10 NM_006827 exon3 c.A399C p.K133N GTAATTTTTCGCC . 130.0 58.0 168.0 1.0 . 90 TMEM185A 84548 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 148690383 148690383 + Silent SNP C C T rs150113040 bycluster;by1000genomes TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TMEM185A NM_032508 exon3 c.G354A p.P118P GAACAGCGGCATG . 350.0 81.0 397.0 0.0 C|1.000;T|0.000 131 TMEM53 79639 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 45120780 45120780 + Missense_Mutation SNP C C A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TMEM53 NM_024587 exon3 c.G285T p.E95D GAGCAGCTCGAGC . 67.0 56.0 108.0 0.0 . 92 TMEM79 84283 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 156255314 156255314 + Silent SNP A A T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TMEM79 NM_032323 exon2 c.A297T p.P99P TGAACCAGAGCCC . 192.0 53.0 78.0 0.0 . 90 TMEM8C 389827 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 136379801 136379801 + Missense_Mutation SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TMEM8C NM_001080483 exon5 c.C623A p.P208Q TTGGCCGGGGTCC . 89.0 39.0 116.0 1.0 . 68 TNIP3 79931 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 122078361 122078361 + Missense_Mutation SNP C C A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TNIP3 NM_001244764 exon7 c.G482T p.R161I AGGAATCTTTCCG . 364.0 131.0 335.0 1.0 . 91 TNXB 7148 hgsc.bcm.edu;bcgsc.ca 37 6 32010105 32010105 + Missense_Mutation SNP A A C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TNXB NM_019105 exon41 c.T12239G p.F4080C CTCCAGAAGTCTG . 1240.0 314.0 1140.0 2.0 . 90 TPP1 1200 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6638385 6638385 + Splice_Site SNP C C T rs56144125 byfrequency TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TPP1 NM_000391 exon7 c.509-1G>A . CCCCCACTGTAGG . 124.0 51.0 144.0 0.0 C|0.999;G|0.001;T|0.000 90 TRIM31 11074 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 30071337 30071337 + Missense_Mutation SNP C C A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TRIM31 NM_007028 exon9 c.G1254T p.W418C ACAAAACCAAGCC . 65.0 34.0 71.0 1.0 . 658 TRIM6-TRIM34 445372 broad.mit.edu;bcgsc.ca 37 11 5663672 5663672 + Silent SNP T T C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TRIM6-TRIM34 NM_001003819 exon12 c.T1872C p.V624V AATGGTTTCCAAG . 83.0 4.0 113.0 0.0 . 45 TSPYL5 85453 broad.mit.edu;bcgsc.ca 37 8 98289467 98289467 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TSPYL5 NM_033512 exon1 c.G606A p.M202I CGTATCCATGCTG . 97.0 7.0 59.0 0.0 . 136 TTN 7273 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 179510675 179510675 + Missense_Mutation SNP A A T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TTN NM_001267550 exon217 c.T40380A p.D13460E CTTCACATCTTCC . 604.0 30.0 437.0 0.0 . 636 TUBG1 7283 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 40766524 40766524 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TUBG1 NM_001070 exon10 c.G1007A p.S336N ACAAGAGCTTGCA . 182.0 17.0 158.0 0.0 . 91 TUSC1 286319 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 25677928 25677928 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . TUSC1 NM_001004125 exon1 c.G392A p.R131Q GGGACCCGGCGTG . 37.0 8.0 26.0 0.0 . 90 UBE2J1 51465 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 90053437 90053437 + Missense_Mutation SNP C C A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . UBE2J1 NM_016021 exon2 c.G70T p.D24Y TTGGATCTTTCAA . 82.0 64.0 96.0 0.0 . 226 UCKL1 54963 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 20 62577849 62577849 + Nonsense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . UCKL1 NM_017859 exon2 c.G261A p.W87X ATTGTACCAGGGC . 128.0 20.0 91.0 0.0 . 115 URM1 81605 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 131140322 131140322 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . URM1 NM_001265582 exon2 c.G43A p.A15T GGTGGTGCGGAGC . 373.0 39.0 452.0 1.0 . 90 USP19 10869 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 49145886 49145886 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . USP19 NM_001199161 exon27 c.C4114T p.R1372W CTGGCCGATCCAC . 49.0 14.0 56.0 0.0 . 663 USP42 84132 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 6189266 6189266 + Frame_Shift_Del DEL C C - novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 USP42,NS,malignant_melanoma,-1 USP42 NM_032172 exon13 c.1439delC p.S480fs GCAGTTCCATGTC . 280.0 57.0 207.0 0.0 . 659 UTRN 7402 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 6 144765510 144765510 + Nonsense_Mutation SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . UTRN NM_007124 exon13 c.G1606T p.E536X TTATTGGAAGAAC . 42.0 29.0 51.0 0.0 . 95 VAV3 10451 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 108315394 108315394 + Missense_Mutation SNP T T G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . VAV3 NM_006113 exon5 c.A518C p.Y173S TCCTCATAGACTT . 179.0 16.0 185.0 0.0 . 1339 WDR31 114987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 116082738 116082738 + Missense_Mutation SNP G G C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . WDR31 NM_001012361 exon9 c.C679G p.P227A TTGCAGGAAACAT . 121.0 61.0 142.0 0.0 . 90 XKR9 389668 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 71646369 71646369 + Missense_Mutation SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . XKR9 NM_001011720 exon5 c.A832G p.I278V TTTAATATTAAGG . 895.0 44.0 544.0 0.0 . 92 ZCCHC6 79670 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 88934568 88934568 + Missense_Mutation SNP T T A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ZCCHC6 NM_024617 exon15 c.A3046T p.I1016F CTATAATTGTTGG . 90.0 19.0 87.0 0.0 . 92 ZEB2 9839 broad.mit.edu;bcgsc.ca 37 2 145147427 145147427 + Missense_Mutation SNP G G T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ZEB2 NM_014795 exon10 c.C3236A p.S1079Y CAGTAGGAATACC . 67.0 6.0 50.0 0.0 . 297 ZNF253 56242 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 20003387 20003387 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ZNF253 NM_021047 exon4 c.G1331A p.R444K ATAAGAGAATTCA . 233.0 15.0 122.0 0.0 . 90 ZNF253 56242 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 20003414 20003414 + Missense_Mutation SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ZNF253 NM_021047 exon4 c.A1358G p.K453R CTTACAAATGTGA . 316.0 28.0 150.0 0.0 . 90 ZNF570 148268 broad.mit.edu;bcgsc.ca 37 19 37975151 37975151 + Missense_Mutation SNP G G C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ZNF570 NM_144694 exon5 c.G627C p.K209N GCCCAAGAGTGTC . 136.0 6.0 84.0 0.0 . 91 ZNF578 147660 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 53008031 53008031 + Missense_Mutation SNP G G A novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . . NM_001099694 exon5 c.G187A p.V63M GAGGCTGTGGGTG . 101.0 47.0 89.0 0.0 . . ZNF69 7620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 12014498 12014498 + Missense_Mutation SNP G G C novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ZNF69 NM_021915 exon2 c.G132C p.R44S TTTCAGGAACCTG . 679.0 386.0 385.0 0.0 . 91 ZNF813 126017 broad.mit.edu;bcgsc.ca 37 19 53995075 53995075 + Missense_Mutation SNP A A G novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ZNF813 NM_001004301 exon4 c.A1589G p.K530R GTGGCAAGGTTTT . 310.0 18.0 238.0 1.0 . 67 ZSCAN30 100101467 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 32843982 32843982 + Missense_Mutation SNP C C T novel TCGA-DD-A113-01A-11D-A12Z-10 TCGA-DD-A113-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c6c53601-c4c7-429b-9fac-cf9d3db20ab1 59993464-9550-4996-b7c9-ca8629febad1 . ZSCAN30 NM_001166012 exon3 c.G335A p.R112Q TCTGGCCGATGCT . 352.0 17.0 223.0 0.0 . 68