Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACTC1	70	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35084616	35084616	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ACTC1	NM_005159	exon4	c.C609T	p.V203V	AGTGGTGACAAAG	.	164.0	54.0	66.0	0.0	.	92
ACVR1	90	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	158637001	158637001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ACVR1	NM_001105	exon4	c.A179G	p.N60S	CCATCGTTGATGC	.	163.0	61.0	43.0	0.0	.	980
ACVRL1	94	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52307800	52307800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ACVRL1	NM_000020	exon5	c.C568T	p.L190F	TCAGGGCTCCCCT	.	171.0	71.0	44.0	0.0	.	521
ADAD1	132612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123301311	123301311	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ADAD1	NM_139243	exon3	c.G87A	p.A29A	ACCAGCGACAAAG	.	130.0	87.0	65.0	0.0	.	90
ADAT1	23536	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	75637056	75637056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ADAT1	NM_012091	exon10	c.A1303G	p.K435E	CCACTTTGCTGAT	.	90.0	49.0	55.0	0.0	.	92
ADCK1	57143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	78353552	78353552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ADCK1	NM_020421	exon5	c.A542G	p.K181R	ACCCAAAGGTGCG	.	50.0	22.0	23.0	0.0	.	334
AGO4	192670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36291032	36291032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_017629	exon4	c.A425G	p.N142S	ACTTGAATGAAGT	.	264.0	143.0	123.0	0.0	.	.
ALMS1	7840	broad.mit.edu;bcgsc.ca	37	2	73716774	73716774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ALMS1	NM_015120	exon10	c.C7685T	p.P2562L	AGAGTCCACGGGG	.	145.0	7.0	53.0	0.0	.	142
ALOX15B	247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7951723	7951723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ALOX15B	NM_001141	exon14	c.C1871T	p.P624L	CCTATCCGGATGA	.	35.0	20.0	19.0	0.0	.	227
AMACR	23600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34005875	34005875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	AMACR	NM_014324	exon2	c.A377G	p.Y126C	GCCAAATAGTTGA	.	61.0	16.0	27.0	0.0	.	90
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	9256402	9256402	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ANKRD12	NM_015208	exon9	c.A3137T	p.K1046I	AACTAAAATCTGA	.	239.0	64.0	122.0	0.0	.	92
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36216083	36216083	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARAP2	NM_015230	exon3	c.A925T	p.N309Y	CAACATTTCTTCT	.	397.0	281.0	120.0	0.0	.	93
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141033643	141033643	+	Silent	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARAP3	NM_022481	exon33	c.G4509T	p.L1503L	ACTTCCCAGGCCT	.	208.0	86.0	61.0	0.0	.	291
ARID3C	138715	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	9	34623647	34623647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARID3C	NM_001017363	exon4	c.C640A	p.Q214K	CGGCCTGGAGCTC	.	32.0	16.0	19.0	0.0	.	91
ATRNL1	26033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	117228753	117228753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ATRNL1	NM_207303	exon24	c.T3568C	p.S1190P	AGTTTTTCCTATG	.	84.0	39.0	71.0	0.0	.	96
BAHD1	22893	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	40757537	40757537	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BAHD1	NM_014952	exon6	c.T2056A	p.L686M	GAGCCCTTGCAGA	.	182.0	69.0	70.0	0.0	.	90
BDH1	622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	197238766	197238766	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BDH1	NM_004051	exon7	c.A1032C	p.X344C	GACTCTTCAGCGG	.	153.0	51.0	60.0	0.0	.	91
BIN1	274	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	127821169	127821169	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BIN1	NM_139345	exon9	c.752delA	p.N251fs	TGGAAGTTTTCCT	.	152.0	52.0	54.0	0.0	.	655
C11orf84	144097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63585307	63585307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C11orf84	NM_138471	exon2	c.G158C	p.R53T	CGCCTAGACCCAG	.	87.0	24.0	38.0	0.0	.	90
C14orf39	317761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	60921835	60921835	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C14orf39	NM_174978	exon16	c.G1387C	p.V463L	TTTGAACTTCAGG	.	252.0	89.0	104.0	0.0	.	94
C19orf10	56005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4658077	4658077	+	Silent	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C19orf10	NM_019107	exon6	c.A462T	p.A154A	TTTGAATGCCCCG	.	38.0	11.0	23.0	0.0	.	90
C1QTNF2	114898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	159776748	159776748	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C1QTNF2	NM_031908	exon3	c.A420G	p.P140P	GCCCTTTGGTCCT	.	37.0	8.0	15.0	0.0	.	91
C1S	716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7177505	7177505	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C1S	NM_201442	exon12	c.G1617A	p.V539V	CCCAGTGAAAATG	.	87.0	33.0	35.0	0.0	.	91
C6orf165	154313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88128113	88128113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C6orf165	NM_001031743	exon7	c.G819T	p.E273D	ATATGAGGTCTTC	.	173.0	71.0	71.0	0.0	.	90
CACNA1B	774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140901281	140901281	+	Silent	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CACNA1B	NM_001243812	exon16	c.C2037G	p.V679V	CGGCGTCAGCAAA	.	210.0	143.0	92.0	0.0	.	138
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181548355	181548355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CACNA1E	NM_001205293	exon5	c.A764T	p.N255I	TGAACAATTCAGG	.	545.0	189.0	113.0	0.0	.	95
CCNB1IP1	57820	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	20779825	20779826	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CCNB1IP1	NM_021178	exon7	c.718_719insT	p.A240fs	AACCCGCAAAAAA	.	291.0	83.0	90.0	0.0	.	659
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63430104	63430104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CDH7	NM_004361	exon2	c.G26T	p.C9F	AGTTCTGCCATTT	.	94.0	31.0	54.0	0.0	.	94
CDHR5	53841	ucsc.edu;bcgsc.ca	37	11	618860	618860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CDHR5	NM_021924	exon13	c.A1699G	p.S567G	CCCCACTGGGTGT	.	389.0	50.0	84.0	0.0	.	90
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109795619	109795619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CELSR2	NM_001408	exon1	c.T2918C	p.I973T	TGGACATCTTCTC	.	95.0	42.0	37.0	0.0	.	526
CGN	57530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151499552	151499552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CGN	NM_020770	exon10	c.G1865T	p.G622V	GTGCTGGAGATAC	.	228.0	79.0	83.0	0.0	.	93
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130286897	130286897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	COL6A6	NM_001102608	exon5	c.A1850G	p.K617R	CTTGCAAAGAGAT	.	121.0	45.0	50.0	0.0	.	76
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113988234	113988234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	CSMD3,NS,carcinoma,0	CSMD3	NM_198123	exon7	c.G1174A	p.E392K	GTTCCTCGGAAAG	.	404.0	85.0	101.0	0.0	.	1132
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	CTNNB1,gallbladder,other,-1	CTNNB1	NM_001098209	exon3	c.T97C	p.S33P	CTGGACTCTGGAA	.	223.0	71.0	91.0	1.0	.	24361
DCST2	127579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155003099	155003099	+	Silent	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DCST2	NM_144622	exon6	c.G828T	p.R276R	ACGCACCCGGTTG	.	253.0	94.0	67.0	0.0	.	92
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13770967	13770967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DNAH5	NM_001369	exon56	c.A9496G	p.R3166G	GGAATCTCTGAAA	.	272.0	77.0	66.0	0.0	.	182
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169141427	169141427	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DOCK2	NM_004946	exon19	c.A1907T	p.K636M	TAGAAAAGTTGAA	.	385.0	103.0	100.0	0.0	.	97
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7585392	7585392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DSP	NM_004415	exon24	c.A7897G	p.I2633V	ATCTCCATTACAG	.	88.0	28.0	34.0	0.0	.	518
DTX3L	151636	broad.mit.edu;bcgsc.ca	37	3	122287562	122287562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	DTX3L,NS,carcinoma,-1	DTX3L	NM_138287	exon3	c.A626G	p.K209R	AGAGGAAGCCACT	.	128.0	7.0	53.0	0.0	.	587
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184049265	184049265	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	EIF4G1	NM_001194946	exon31	c.G4287A	p.V1429V	GAAGGTGGAGTAT	.	68.0	28.0	28.0	0.0	.	344
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5433469	5433469	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	EPB41L3	NM_012307	exon8	c.A911T	p.K304M	CATACCTTAGCAT	.	85.0	27.0	42.0	0.0	.	95
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144945358	144945358	+	Silent	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	EPPK1	NM_031308	exon1	c.C2064A	p.V688V	GCCAGTGACAGCG	.	209.0	40.0	37.0	0.0	.	25
ERC1	23085	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1517402	1517402	+	Missense_Mutation	SNP	T	T	A	rs140227397	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ERC1	NM_178040	exon17	c.T3013A	p.S1005T	AAGCCCTCCCCAG	.	63.0	18.0	17.0	0.0	T|1.000;C|0.000	660
ERCC8	1161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60217888	60217888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ERCC8	NM_000082	exon3	c.A268G	p.I90V	TGCCAATGGAACA	.	59.0	24.0	36.0	0.0	.	227
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40424311	40424311	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FCGBP	NM_003890	exon4	c.C1892G	p.P631R	GCGTCAGGAGCCA	.	104.0	40.0	44.0	0.0	.	98
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180047636	180047636	+	Silent	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FLT4	NM_182925	exon16	c.C2379G	p.L793L	GAGGAGGAGGAGG	.	172.0	64.0	47.0	0.0	.	1490
FMO1	2326	broad.mit.edu;mdanderson.org	37	1	171251160	171251160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FMO1	NM_002021	exon7	c.C871T	p.R291C	CCAGGACGCATCA	.	37.0	7.0	39.0	0.0	.	515
FOXN1	8456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26851109	26851109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FOXN1	NM_003593	exon1	c.G122T	p.S41I	CACAGAGTGTAAG	.	78.0	34.0	37.0	0.0	.	226
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39265478	39265478	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FREM2	NM_207361	exon1	c.G3997C	p.D1333H	GATTTAGATTCAG	.	73.0	42.0	64.0	0.0	.	100
FZR1	51343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	3527733	3527733	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FZR1	NM_001136198	exon6	c.T575G	p.L192R	TCAATCTGGTGGA	.	160.0	47.0	50.0	0.0	.	227
GIT2	9815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110385195	110385195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GIT2	NM_001135214	exon15	c.A1507G	p.R503G	GACGTCTCTTTAA	.	282.0	98.0	88.0	0.0	.	226
GPR110	266977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46976681	46976681	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GPR110	NM_153840	exon11	c.G2490C	p.Q830H	TCTCACCTGGAAT	.	171.0	60.0	81.0	0.0	.	71
HDHD1	8226	broad.mit.edu;bcgsc.ca	37	X	7035008	7035008	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HDHD1	NM_001135565	exon2	c.G129A	p.T43T	CTTACCCGTCCAC	.	105.0	5.0	31.0	0.0	.	130
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197084796	197084796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HECW2	NM_020760	exon26	c.A4375G	p.S1459G	AATCACTTAGGTC	.	120.0	38.0	56.0	0.0	.	668
HGSNAT	138050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	43033222	43033222	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HGSNAT	NM_152419	exon10	c.T857A	p.V286E	GGTTTGTATTTAT	.	197.0	110.0	114.0	0.0	.	68
HIRA	7290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19376069	19376069	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HIRA	NM_003325	exon10	c.T945C	p.C315C	TTTCAGACATGTG	.	100.0	41.0	41.0	0.0	.	91
HMGXB4	10042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	35661228	35661228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HMGXB4	NM_001003681	exon5	c.G847A	p.D283N	AACCTTGATCTTT	.	228.0	72.0	72.0	0.0	.	272
HYAL4	23553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123517143	123517143	+	Silent	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HYAL4	NM_012269	exon5	c.T1380A	p.P460P	TTCCCCTTCTCCT	.	302.0	112.0	106.0	0.0	.	91
INTS7	25896	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	212184718	212184718	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	INTS7	NM_015434	exon5	c.A555G	p.Q185Q	CATACCTTGAATC	.	559.0	39.0	153.0	0.0	.	90
KIF4B	285643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154396242	154396242	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KIF4B	NM_001099293	exon1	c.C2823G	p.S941R	GGAAAGCCAAATG	.	484.0	86.0	103.0	1.0	.	1
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	135025348	135025348	+	Missense_Mutation	SNP	G	G	T	rs201175312	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KNDC1	NM_152643	exon23	c.G4222T	p.G1408C	GAGGACGGCATCT	.	36.0	21.0	11.0	0.0	G|0.999;A|0.001	229
KRT75	9119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	52826871	52826871	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRT75	NM_004693	exon2	c.G664T	p.E222X	CAGCTTCAAGCCT	.	192.0	83.0	53.0	0.0	.	90
KRTAP13-2	337959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31744410	31744410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRTAP13-2	NM_181621	exon1	c.G122T	p.C41F	GGAGAGCAGAGGT	.	225.0	76.0	79.0	0.0	.	90
KRTAP4-3	85290	broad.mit.edu;bcgsc.ca	37	17	39324104	39324104	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRTAP4-3	NM_033187	exon1	c.T321C	p.S107S	GCAACTAGAAATG	.	310.0	26.0	91.0	0.0	.	22
KRTAP5-10	387273	hgsc.bcm.edu;bcgsc.ca	37	11	71276918	71276918	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRTAP5-10	NM_001012710	exon1	c.C285T	p.G95G	CTGTGGCTCCTGT	.	158.0	40.0	39.0	0.0	.	91
LEO1	123169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52251010	52251010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LEO1	NM_138792	exon6	c.C1174A	p.Q392K	AATACTGAGGATC	.	280.0	101.0	101.0	0.0	.	68
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55148212	55148212	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LILRB1	NM_001081637	exon15	c.G1842A	p.V614V	GGATGTGACCTAC	.	385.0	105.0	119.0	0.0	.	137
LPAR4	2846	ucsc.edu;bcgsc.ca	37	X	78011334	78011334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LPAR4	NM_005296	exon2	c.A968T	p.Y323F	CCTTCTACATCAA	.	40.0	4.0	50.0	0.0	.	133
LRRC18	474354	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	50122143	50122143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LRRC18	NM_001006939	exon1	c.A58G	p.N20D	TGCAATTCCTGGC	.	53.0	21.0	37.0	0.0	.	92
LTBP3	4054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	65320914	65320914	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LTBP3	NM_001130144	exon4	c.A952C	p.K318Q	GACACTTGTGGCA	.	160.0	66.0	48.0	0.0	.	91
MAP2K4	6416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	12016635	12016636	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAP2K4	NM_003010	exon7	c.771_772del	p.257_258del	GGACTCTATTGCC	.	71.0	37.0	50.0	0.0	.	3134
MAP4K2	5871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64564456	64564456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAP4K2	NM_004579	exon20	c.C1405A	p.H469N	TTACATGCACCTT	.	130.0	57.0	53.0	0.0	.	360
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6296583	6296583	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MCPH1	NM_001172574	exon6	c.G546A	p.E182E	ACAAGAGATGAAG	.	95.0	28.0	36.0	0.0	.	229
METTL21C	196541	broad.mit.edu;bcgsc.ca	37	13	103339359	103339359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	METTL21C	NM_001010977	exon3	c.T331C	p.F111L	CTTGGAAATTCAA	.	78.0	7.0	46.0	0.0	.	90
MRPL10	124995	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	45906024	45906024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MRPL10	NM_148887	exon3	c.C95T	p.T32I	TGGAGGGTAGGCA	.	39.0	16.0	15.0	0.0	.	91
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9002558	9002558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC16	NM_024690	exon51	c.C40258A	p.H13420N	TGCCGTGGGTCAG	.	362.0	117.0	99.0	0.0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9087113	9087113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC16	NM_024690	exon1	c.A4702G	p.T1568A	ACTGTGTCACGTG	.	406.0	153.0	139.0	0.0	.	566
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23866803	23866803	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MYH6	NM_002471	exon16	c.A1911T	p.K637N	GCCTCCTTTGCTT	.	89.0	23.0	37.0	0.0	.	94
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23883217	23883217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MYH7	NM_000257	exon38	c.C5654T	p.A1885V	CTCACCGCCTCCT	.	121.0	51.0	58.0	0.0	.	94
MYO1G	64005	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	45002481	45002481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MYO1G	NM_033054	exon22	c.C2914A	p.L972M	CCTCCAGGGTGCG	.	47.0	18.0	8.0	0.0	.	137
NEU1	4758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31830507	31830507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NEU1	NM_000434	exon1	c.G47T	p.G16V	CGCGGCCCCCAGC	.	105.0	32.0	33.0	0.0	.	91
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117696926	117696926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NOS1	NM_000620	exon15	c.A2377G	p.M793V	CTTCCATGGACAT	.	156.0	58.0	43.0	0.0	.	154
NPC1	4864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21125036	21125036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NPC1	NM_000271	exon12	c.A1835G	p.E612G	TTTAGTTCATCTT	.	334.0	115.0	89.0	0.0	.	92
NUMA1	4926	hgsc.bcm.edu;broad.mit.edu	37	11	71726211	71726220	+	Frame_Shift_Del	DEL	CCTGATGGGC	CCTGATGGGC	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	CCTGATGGGC	CCTGATGGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NUMA1	NM_006185	exon15	c.2329_2338del	p.777_780del	TCTCAGCCTGATG	.	70.0	10.0	23.0	0.0	.	633
PAWR	5074	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	80083895	80083895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PAWR	NM_002583	exon2	c.G130T	p.G44W	TGCCCCCTCCCGG	.	22.0	6.0	15.0	0.0	.	90
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52588770	52588770	+	Missense_Mutation	SNP	C	C	A	rs143564112	byfrequency;alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PBRM1	NM_018313	exon27	c.G4258T	p.V1420L	CAGGCACACCTGG	.	229.0	83.0	69.0	0.0	C|0.999;T|0.001	575
PDK3	5165	broad.mit.edu;bcgsc.ca	37	X	24549826	24549826	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PDK3	NM_005391	exon10	c.A1016C	p.Q339P	ATTTTCAAGGAGA	.	395.0	22.0	98.0	1.0	.	377
PHLDB3	653583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	43983597	43983597	+	Missense_Mutation	SNP	C	C	A	rs200179651	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PHLDB3	NM_198850	exon14	c.G1634T	p.R545L	TTGATGCGGCCGC	.	165.0	63.0	39.0	0.0	.	68
PIGR	5284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207110487	207110487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PIGR	NM_002644	exon4	c.T998C	p.L333P	TCCTGCAGCTGAC	.	112.0	30.0	53.0	0.0	.	92
PLP1	5354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	103041518	103041518	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PLP1	NM_001128834	exon4	c.A316G	p.T106A	TACAAGACCACCA	.	169.0	131.0	86.0	0.0	.	555
POM121L4P	266697	broad.mit.edu;ucsc.edu	37	22	21044998	21044998	+	RNA	SNP	C	C	T	rs5751737	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	TCACTGCTGAAGA	.	92.0	22.0	22.0	0.0	C|0.878;T|0.122	.
POTEG	404785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	19553573	19553573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	POTEG	NM_001005356	exon1	c.G157T	p.A53S	GATTCTGCTATGA	.	1087.0	131.0	173.0	0.0	.	1
PPP1CC	5501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	111162541	111162541	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PPP1CC	NM_002710	exon4	c.G447A	p.W149X	AGTTTTCCATAGT	.	362.0	40.0	99.0	0.0	.	1082
PRB4	5545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	11461456	11461456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PRB4	NM_002723	exon3	c.G461T	p.G154V	GGGGGACCTTGGG	.	500.0	173.0	144.0	0.0	.	91
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68939468	68939468	+	Silent	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PREX2	NM_025170	exon5	c.G453T	p.L151L	CATGCTGCTTGGA	.	200.0	45.0	71.0	0.0	.	390
QRFPR	84109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122250816	122250816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	QRFPR	NM_198179	exon6	c.G949A	p.V317M	TTTGCACGATAGC	.	108.0	64.0	63.0	0.0	.	90
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220356254	220356254	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RAB3GAP2	NM_012414	exon20	c.G2018C	p.R673T	TCAAGCCTTAGTA	.	373.0	116.0	103.0	0.0	.	90
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134497245	134497245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RAPGEF1	NM_198679	exon11	c.G1846A	p.G616R	CCACCCCACTGAA	.	140.0	80.0	58.0	0.0	.	849
RBMXL3	139804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114424168	114424168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001145346	exon1	c.C164A	p.T55N	TCGTCACCTTCGA	.	62.0	55.0	27.0	0.0	.	.
RFX7	64864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	56387675	56387675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RFX7	NM_022841	exon9	c.T2251G	p.S751A	ATGATGATGGGGT	.	81.0	37.0	57.0	0.0	.	90
RRP1B	23076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45094517	45094517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RRP1B	NM_015056	exon5	c.C358A	p.L120M	CTTTAGCTGATTC	.	175.0	55.0	60.0	0.0	.	91
SEMA3E	9723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	83037733	83037733	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SEMA3E	NM_012431	exon6	c.G621A	p.G207G	CAGTCGCCCCATG	.	214.0	71.0	69.0	0.0	.	93
SESN3	143686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94918494	94918494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SESN3	NM_144665	exon5	c.A688G	p.N230D	AATTGTTGACTGA	.	134.0	47.0	95.0	0.0	.	90
SHROOM2	357	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	9863964	9863964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SHROOM2	NM_001649	exon4	c.G2016T	p.Q672H	CACCCAGGAAGGA	.	33.0	21.0	9.0	0.0	.	198
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	40499574	40499574	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLC2A13	NM_052885	exon1	c.C37G	p.L13V	TCCGCAGCGTGTA	.	56.0	22.0	9.0	0.0	.	515
SLC45A4	57210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142231707	142231707	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLC45A4	NM_001080431	exon2	c.C246T	p.G82G	TGCAACGCCAAAG	.	157.0	39.0	27.0	0.0	.	70
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	474998	474998	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLC9A3	NM_004174	exon16	c.T2501A	p.M834K	CGTTACATGTGTG	.	68.0	20.0	23.0	0.0	.	90
SLX4	84464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	3651153	3651153	+	Silent	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLX4	NM_032444	exon5	c.G990T	p.V330V	CTGAGGCACAGAA	.	166.0	58.0	58.0	0.0	.	94
SMC3	9126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112343665	112343665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SMC3	NM_005445	exon12	c.G1036A	p.E346K	CTGGCAGAAACAG	.	311.0	101.0	89.0	0.0	.	92
SMG5	23381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156220788	156220788	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SMG5	NM_015327	exon22	c.2829-1G>T	.	AGAGTCCTGGGGA	.	58.0	31.0	22.0	0.0	.	231
SMOX	54498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	4163387	4163387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SMOX	NM_175839	exon5	c.G1261T	p.G421C	CGCTACGGCCATG	.	165.0	67.0	62.0	0.0	.	153
SPATA31C1	441452	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	9	90535228	90535228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001145124	exon4	c.G406A	p.G136S	CCGCCAGGTGAGG	.	348.0	187.0	123.0	0.0	.	.
SPHK1	8877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74383503	74383503	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SPHK1	NM_182965	exon6	c.C1249G	p.P417A	TTGGAGCCCAAGG	.	187.0	56.0	51.0	0.0	.	1107
STEAP2	261729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	89854615	89854615	+	Silent	SNP	G	G	A	rs145786195	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	STEAP2	NM_001244946	exon3	c.G219A	p.V73V	TCATGTGGTAGAT	.	160.0	51.0	93.0	0.0	G|1.000;T|0.000	92
SYT4	6860	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	40850324	40850324	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SYT4	NM_020783	exon4	c.C1260T	p.H420H	GAGCACGTGCCAC	.	172.0	10.0	79.0	0.0	.	132
SYTL2	54843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	85436897	85436897	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SYTL2	NM_206927	exon1	c.T603C	p.N201N	TGTCCTATTTTCA	.	451.0	158.0	134.0	0.0	.	137
TBX10	347853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	67399113	67399113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TBX10	NM_005995	exon8	c.C1121T	p.T374I	ACCACAGTGGGGG	.	44.0	18.0	12.0	0.0	.	90
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20872028	20872028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TEP1	NM_007110	exon6	c.G1048T	p.D350Y	TCTTATCTCCCTC	.	56.0	26.0	22.0	0.0	.	95
TGIF2LX	90316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	89177754	89177754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TGIF2LX	NM_138960	exon2	c.G670A	p.A224T	GATGCAGCAGTAC	.	275.0	216.0	78.0	0.0	.	92
TIGD7	91151	hgsc.bcm.edu;broad.mit.edu	37	16	3350520	3350536	+	Frame_Shift_Del	DEL	ATTACACTTTTAAGTGA	ATTACACTTTTAAGTGA	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	ATTACACTTTTAAGTGA	ATTACACTTTTAAGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TIGD7	NM_033208	exon2	c.79_95del	p.27_32del	TCATCCATTACAC	.	260.0	75.0	64.0	0.0	.	90
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	72144245	72144245	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TNPO1	NM_002270	exon2	c.G49T	p.E17X	CCTGACGAGCAAG	.	99.0	21.0	43.0	0.0	.	228
TRAM1L1	133022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	118006517	118006517	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRAM1L1	NM_152402	exon1	c.C33T	p.P11P	AACGGGGGGGTTC	.	63.0	45.0	40.0	0.0	.	90
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	72966074	72966074	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRPA1	NM_007332	exon13	c.C1558G	p.H520D	ACGCATGATGCAA	.	151.0	24.0	49.0	0.0	.	230
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	77400791	77400791	+	Missense_Mutation	SNP	A	A	G	rs142068228		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRPM6	NM_017662	exon21	c.T2918C	p.M973T	CTCACCATTTTTG	.	99.0	58.0	48.0	0.0	A|1.000;G|0.000	335
TVP23C	201158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	15406424	15406424	+	Missense_Mutation	SNP	C	C	A	rs17850827		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_145301	exon6	c.G585T	p.R195S	AAACTTCCTCGAG	.	64.0	41.0	29.0	0.0	C|1.000;|0.000	.
UBE3B	89910	ucsc.edu;bcgsc.ca	37	12	109939174	109939174	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	UBE3B	NM_183415	exon13	c.1119-2A>G	.	TCTCCTAGCCTTA	.	44.0	5.0	29.0	0.0	.	660
USP36	57602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76802273	76802273	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	USP36	NM_025090	exon15	c.C2181T	p.P727P	AACGACGGGGTGA	.	141.0	69.0	34.0	0.0	.	659
USP47	55031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	11927068	11927068	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	USP47	NM_017944	exon7	c.T738C	p.Y246Y	ACCTTATGGGTCC	.	230.0	89.0	86.0	0.0	.	660
VIM	7431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17277863	17277863	+	Silent	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	VIM	NM_003380	exon8	c.A1248T	p.P416P	TCTTCCAAACTTT	.	391.0	151.0	114.0	0.0	.	291
VTN	7448	broad.mit.edu;bcgsc.ca	37	17	26694414	26694414	+	Silent	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	VTN	NM_000638	exon8	c.C1413G	p.G471G	TGGGCAGCCCAGC	.	95.0	38.0	29.0	2.0	.	227
WWC1	23286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	167891765	167891765	+	Missense_Mutation	SNP	G	G	A	rs139653620		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	WWC1,NS,carcinoma,0	WWC1	NM_001161662	exon21	c.G2966A	p.R989H	CCGAGCGTCTGAT	.	194.0	53.0	39.0	0.0	G|1.000;A|0.000	157
YTHDF3	253943	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	64098980	64098980	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	ATGGGGGACAAGT	.	770.0	176.0	122.0	0.0	.	.
ZDHHC19	131540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195935366	195935366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZDHHC19	NM_001039617	exon4	c.G474A	p.M158I	AAGCAGCATGAAG	.	269.0	91.0	81.0	0.0	.	93
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77767241	77767241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZFHX4	NM_024721	exon10	c.G8084T	p.R2695L	ACATTCGCTCTCG	.	175.0	36.0	36.0	0.0	.	98
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50769740	50769740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZFP64	NM_018197	exon6	c.C991T	p.R331W	GCTTCCGGAGGGT	.	244.0	101.0	78.0	0.0	.	155
ZFYVE20	64145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15115343	15115343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZFYVE20	NM_022340	exon14	c.G2301T	p.E767D	CAGATTCTCTGTC	.	143.0	56.0	50.0	0.0	.	92
ZHX1	11244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124267557	124267557	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZHX1	NM_007222	exon3	c.A630G	p.K210K	ATTCTCTTTCTCT	.	608.0	126.0	109.0	0.0	.	91
ZNF414	84330	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	8576572	8576572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF414	NM_032370	exon5	c.G803T	p.R268L	CGCAGGCGCGGGG	.	34.0	19.0	11.0	0.0	.	90
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	31038933	31038933	+	Missense_Mutation	SNP	C	C	T	rs140147461		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF536	NM_014717	exon4	c.C2407T	p.R803W	CACCATCGGGAGC	.	118.0	47.0	37.0	0.0	C|1.000;T|0.000	144
ZNF606	80095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58489830	58489830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF606	NM_025027	exon7	c.C2218T	p.H740Y	CACAATGATTACA	.	269.0	11.0	100.0	0.0	.	92
ZNF644	84146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	91405648	91405648	+	Silent	SNP	C	C	T	rs78456645	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF644	NM_201269	exon3	c.G1263A	p.E421E	CTTCTTCTCCCTA	.	170.0	76.0	90.0	0.0	C|0.997;T|0.003	155
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	22363957	22363958	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF676	NM_001001411	exon3	c.561_562del	p.187_188del	TACTCTTATAATA	.	110.0	30.0	61.0	0.0	.	90
ZNF687	57592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151260007	151260007	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF687	NM_020832	exon2	c.C1240T	p.L414L	GCCATGCTGATGG	.	71.0	26.0	19.0	0.0	.	92
ZNF790	388536	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	37309866	37309869	+	Frame_Shift_Del	DEL	AAGA	AAGA	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	AAGA	AAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF790	NM_206894	exon5	c.1377_1380del	p.459_460del	GCCATGAAGAAAG	.	174.0	51.0	68.0	0.0	.	92
ZNF676	163223	hgsc.bcm.edu;bcgsc.ca	37	19	22363952	22363953	+	Missense_Mutation	DNP	AC	AC	TA	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	p.S189I	ATGAATACTCTTA	.	98.0	31.0	60.0	0.0	.	.
OR2T4	127074	ucsc.edu;bcgsc.ca	37	1	248525290	248525291	+	Missense_Mutation	DNP	CG	CG	TC	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	p.V137L	CTTCTACGTGACA	.	817.0	157.0	151.0	0.0	.	.