Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACCS	84680	hgsc.bcm.edu;bcgsc.ca	37	11	44089261	44089262	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ACCS	NM_032592	exon2	c.84_85insG	p.H28fs	TAGCCATGGGGAA	.	143.0	16.0	165.0	0.0	.	155
ACTR3B	57180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	152549222	152549222	+	Silent	SNP	C	C	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ACTR3B	NM_020445	exon10	c.C963G	p.L321L	CGTACTCTCAGGA	.	225.0	62.0	217.0	0.0	.	514
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	151670985	151670985	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	AKAP12	NM_005100	exon4	c.A1459T	p.K487X	GATGAGAAGGTGC	.	50.0	29.0	60.0	0.0	.	293
ARHGAP4	393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153185069	153185069	+	Silent	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARHGAP4	NM_001164741	exon6	c.C753A	p.L251L	GTGCACGAGAAAC	.	201.0	29.0	140.0	0.0	.	227
ARHGAP6	395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	11206890	11206890	+	Silent	SNP	C	C	T	rs151308614	byfrequency	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARHGAP6	NM_006125	exon4	c.G1035A	p.T345T	TGGGGACGTTGAC	.	680.0	124.0	571.0	0.0	C|0.999;T|0.001	227
ARHGEF18	23370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7516109	7516109	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARHGEF18	NM_001130955	exon6	c.C1248T	p.T416T	CATAACCAAATAC	.	130.0	25.0	107.0	0.0	.	228
ARSD	414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	2835844	2835844	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARSD	NM_001669	exon6	c.863+1G>A	.	TGCTTACCTTTCA	.	143.0	37.0	110.0	0.0	.	130
ASB10	136371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150883617	150883617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ASB10	NM_001142459	exon2	c.G446A	p.R149H	GCGGTGCGGCCCC	.	59.0	10.0	58.0	0.0	.	226
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108218075	108218075	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ATM	NM_000051	exon59	c.T8654A	p.L2885H	CAGAACTTGTACA	.	257.0	125.0	247.0	0.0	.	3419
ATXN7L1	222255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105278897	105278897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ATXN7L1	NM_020725	exon7	c.G1105A	p.A369T	CCTGTGCCGGCCC	.	350.0	125.0	288.0	1.0	.	90
AUTS2	26053	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	69364274	69364274	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	AUTS2	NM_001127231	exon2	c.A312C	p.K104N	ACAGAAAGATGTA	.	168.0	30.0	167.0	1.0	.	92
B9D1	27077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19261177	19261177	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	B9D1	NM_015681	exon3	c.T220A	p.F74I	TTTTAAAGGTGAC	.	60.0	24.0	83.0	0.0	.	68
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	52440295	52440295	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	BAP1,uveal_tract,malignant_melanoma,0	BAP1	NM_004656	exon9	c.C757T	p.Q253X	CTGTCTGACGGTT	.	110.0	65.0	156.0	1.0	.	1032
BEND5	79656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	49242456	49242456	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BEND5	NM_024603	exon1	c.G48A	p.L16L	CACGGGCAGCGCG	.	61.0	22.0	40.0	0.0	.	91
BHLHB9	80823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102005369	102005369	+	Silent	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BHLHB9	NM_001142530	exon2	c.C1446A	p.I482I	CATGATCAATATG	.	566.0	231.0	452.0	1.0	.	132
BHMT2	23743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78376532	78376532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BHMT2	NM_017614	exon4	c.C281T	p.A94V	CTGCTGCCTGTGA	.	249.0	18.0	209.0	0.0	.	91
BNIP2	663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59972472	59972472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BNIP2	NM_004330	exon3	c.T449C	p.I150T	GCTAGTATATCTG	.	49.0	28.0	56.0	0.0	.	228
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49688366	49688366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BSN	NM_003458	exon4	c.A1840G	p.T614A	GTCCCCACTAAAG	.	53.0	15.0	95.0	0.0	.	97
C14orf39	317761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	60945061	60945061	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	C14orf39	NM_174978	exon5	c.C280G	p.Q94E	GGTCCTGCATATA	.	252.0	63.0	311.0	0.0	.	94
C1orf173	127254	ucsc.edu;bcgsc.ca	37	1	75114955	75114955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	C1orf173	NM_001002912	exon2	c.G68A	p.G23E	AAATACCCAGCCA	.	39.0	4.0	73.0	0.0	.	94
C1S	716	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7169973	7169973	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	C1S	NM_201442	exon3	c.A200C	p.Y67S	GTGCGTATGACTC	.	97.0	23.0	92.0	1.0	.	91
C22orf34	348645	bcgsc.ca;mdanderson.org	37	22	50017062	50017062	+	RNA	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	.	.	.	.	TGCATAGGATGCA	.	90.0	16.0	76.0	2.0	.	.
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2788717	2788717	+	Silent	SNP	G	G	A	rs200638007		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	Q6YL47_HUMAN,NS,carcinoma,0	CACNA1C	NM_199460	exon44	c.G5343A	p.A1781A	CAAGGCGGGCAGC	.	74.0	19.0	51.0	0.0	G|0.999;A|0.001	34
CAMTA1	23261	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	7724363	7724363	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CAMTA1	NM_015215	exon9	c.T1756G	p.F586V	ATGGACTTCAGCG	.	53.0	19.0	69.0	0.0	.	520
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57734093	57734093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CCDC135	NM_032269	exon4	c.C415A	p.P139T	CTGATGCCCTACC	.	104.0	17.0	119.0	0.0	.	90
CD163L1	283316	hgsc.bcm.edu;bcgsc.ca	37	12	7556293	7556293	+	Missense_Mutation	SNP	C	C	T	rs151328196	byfrequency	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CD163L1	NM_174941	exon6	c.G1246A	p.V416I	CAAAGACGCTGAA	.	131.0	9.0	156.0	0.0	C|0.999;T|0.001	100
CD1D	912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158151319	158151319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CD1D	NM_001766	exon3	c.G136A	p.G46S	ACCGACGGCTTGG	.	104.0	17.0	66.0	0.0	.	92
CD47	961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	107799113	107799113	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CD47	NM_198793	exon2	c.T125G	p.F42C	GTAACAAAGCATG	.	152.0	40.0	181.0	0.0	.	91
CDC45	8318	broad.mit.edu;bcgsc.ca	37	22	19471437	19471437	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CDC45	NM_003504	exon5	c.A395G	p.D132G	ATGAAGACATCTT	.	126.0	7.0	105.0	0.0	.	227
CDH26	60437	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58564047	58564047	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CDH26	NM_177980	exon9	c.T1112A	p.L371H	GAAAGCTTCAGCC	.	108.0	17.0	72.0	0.0	.	93
CEACAM16	388551	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45206800	45206800	+	Silent	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CEACAM16	NM_001039213	exon3	c.C219A	p.G73G	CACAGGCGATGAG	.	142.0	20.0	98.0	1.0	.	23
CHCHD6	84303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126445955	126445955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CHCHD6	NM_032343	exon2	c.C122T	p.P41L	AGGAGCCCAGCTC	.	205.0	51.0	222.0	0.0	.	90
CPD	1362	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28772898	28772898	+	Silent	SNP	G	G	T	rs187666987	alternate_allele	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CPD	NM_001304	exon12	c.G2733T	p.A911A	TTCAGCGGAGAAT	.	166.0	52.0	247.0	1.0	G|0.999;A|0.000	92
CSMD1	64478	ucsc.edu;bcgsc.ca	37	8	2836265	2836265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CSMD1	NM_033225	exon55	c.A8435G	p.N2812S	GGGAAGTTCTGTT	.	39.0	4.0	91.0	0.0	.	86
CSTF2	1478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100078295	100078295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CSTF2	NM_001325	exon4	c.G322T	p.A108S	ACTGGTGCCCCTG	.	163.0	25.0	123.0	0.0	.	131
DLGAP5	9787	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55618447	55618447	+	Silent	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DLGAP5	NM_014750	exon17	c.C2334A	p.I778I	TTCTAAGATGCTA	.	166.0	53.0	218.0	1.0	.	92
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124329720	124329720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DMBT1	NM_007329	exon3	c.C134T	p.A45V	CTGTAGCAGAAGG	.	175.0	47.0	173.0	0.0	.	494
DNASE2	1777	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	12991796	12991796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DNASE2	NM_001375	exon2	c.A257G	p.N86S	CTGGTGTTGCTCC	.	82.0	16.0	91.0	0.0	.	90
DNASE2	1777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12987092	12987092	+	Silent	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DNASE2	NM_001375	exon6	c.T795G	p.S265S	GCAGTTAGAGGGC	.	135.0	21.0	121.0	0.0	.	90
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117788710	117788710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DOCK11	NM_144658	exon43	c.C4841T	p.T1614I	CAAGCACCCCAGA	.	267.0	99.0	240.0	0.0	.	93
DST	667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	56417839	56417846	+	Frame_Shift_Del	DEL	TCAGTGAC	TCAGTGAC	-	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	TCAGTGAC	TCAGTGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DST	NM_015548	exon42	c.7875_7882del	p.2625_2628del	TCTGGATCAGTGA	.	129.0	11.0	102.0	0.0	.	523
DUSP6	1848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	89743032	89743032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DUSP6	NM_001946	exon3	c.G1145T	p.X382L	GTCTTTCACGTAG	.	80.0	20.0	83.0	0.0	.	846
EFHC2	80258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	44091923	44091923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	EFHC2	NM_025184	exon10	c.G1424A	p.G475E	GCAATTCCTATAA	.	154.0	66.0	98.0	0.0	.	135
ENAM	10117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71508293	71508293	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ENAM	NM_031889	exon9	c.C1150G	p.P384A	GCTTACCCTCCTA	.	305.0	53.0	239.0	0.0	.	93
EPGN	255324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	75174267	75174267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	EPGN	NM_001270993	exon1	c.C17T	p.P6L	GAGTTCCAATATC	.	343.0	43.0	391.0	0.0	.	90
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56487230	56487230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ERBB3	NM_001982	exon12	c.A1376G	p.N459S	GTGCCAATAGGCA	.	94.0	24.0	142.0	0.0	.	1403
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65303132	65303132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	EYS	NM_001142800	exon25	c.G3755T	p.R1252I	TCTGTTCTTTGAA	.	320.0	49.0	258.0	0.0	.	660
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150932949	150932949	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FAT2	NM_001447	exon6	c.3946-1G>C	.	CTTGATCTGAAAG	.	99.0	17.0	85.0	0.0	.	96
FBLN7	129804	broad.mit.edu;mdanderson.org	37	2	112942913	112942913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FBLN7	NM_153214	exon7	c.C944A	p.P315Q	CGTCTCCATTGTG	.	63.0	10.0	64.0	0.0	.	69
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	34261446	34261446	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FHOD3	NM_025135	exon12	c.1358delA	p.E453fs	ACCAAGAGTCACT	.	253.0	139.0	366.0	0.0	.	139
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152281525	152281525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FLG	NM_002016	exon3	c.C5837T	p.A1946V	TCCCAAGCAGATC	.	734.0	151.0	683.0	0.0	.	106
FN1	2335	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216248174	216248174	+	Missense_Mutation	SNP	C	C	T	rs140153061		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FN1	NM_212482	exon31	c.G4927A	p.D1643N	GAACATCGGTCAC	.	224.0	41.0	254.0	1.0	C|0.999;T|0.000	584
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151806785	151806785	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GABRQ	NM_018558	exon1	c.C129T	p.V43V	CGAAGTCGTCCTG	.	254.0	48.0	188.0	0.0	.	133
GALNT6	11226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51773444	51773444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GALNT6	NM_007210	exon3	c.C122T	p.P41L	AGCCACGGCTTCT	.	96.0	23.0	95.0	1.0	.	92
GH1	2688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61995228	61995228	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GH1	NM_000515	exon4	c.G348A	p.V116V	GAACTGCACGGGC	.	99.0	28.0	111.0	0.0	.	522
GNA15	2769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3162793	3162793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GNA15	NM_002068	exon7	c.C901T	p.P301S	CCAGGCCCTAAGC	.	42.0	11.0	54.0	0.0	.	229
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	rs11554273	bycluster	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	GNAS,colon,carcinoma,0	GNAS	NM_080425	exon8	c.C2530T	p.R844C	CGCTGCCGTGTCC	.	213.0	35.0	163.0	0.0	C|1.000	4767
GPR142	350383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72368126	72368126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GPR142	NM_181790	exon4	c.C776T	p.A259V	ACACTGCCCTGTG	.	61.0	13.0	76.0	0.0	.	93
GPR63	81491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97246895	97246895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GPR63	NM_030784	exon2	c.G713T	p.G238V	TGGTAGCCTGGAT	.	71.0	21.0	149.0	0.0	.	92
GPRASP1	9737	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101911927	101911927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GPRASP1	NM_001099411	exon3	c.C3086T	p.T1029M	GGTCCACGTGTTC	.	243.0	49.0	193.0	1.0	.	131
GRIA3	2892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122538727	122538727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GRIA3	NM_000828	exon10	c.A1462G	p.K488E	GAGACTAAAATAT	.	529.0	102.0	461.0	0.0	.	134
GTF2IRD1	9569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73944105	73944105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	GTF2IRD1,NS,carcinoma,0	GTF2IRD1	NM_001199207	exon9	c.C1228T	p.R410W	CCCTACCGGAAGA	.	121.0	27.0	91.0	0.0	.	94
HIST1H4B	8366	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26027241	26027241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	HIST1H4B	NM_003544	exon1	c.G240T	p.K80N	GACAGTCTTGCGC	.	198.0	30.0	168.0	1.0	.	70
HIST1H4E	8367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26204899	26204899	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	HIST1H4E	NM_003545	exon1	c.G27C	p.K9N	CGGAAAGGGACTG	.	159.0	35.0	139.0	0.0	.	69
IGSF9	57549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159912756	159912756	+	Missense_Mutation	SNP	C	C	A	rs113355407	alternate_allele	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	IGSF9,NS,carcinoma,0	IGSF9	NM_001135050	exon3	c.G244T	p.V82L	TACCCACGTAATC	.	97.0	20.0	93.0	0.0	C|0.500;T|0.500	156
IL13RA1	3597	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117895250	117895250	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IL13RA1	NM_001560	exon6	c.T826A	p.Y276N	GTTTTCTACGTAA	.	402.0	82.0	325.0	1.0	.	554
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	55272094	55272094	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IL6ST	NM_175767	exon3	c.C13T	p.Q5X	AAGTCTGCAACGT	.	336.0	89.0	299.0	0.0	.	290
IMMT	10989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86408465	86408465	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IMMT	NM_006839	exon2	c.C76G	p.P26A	GCAATGGACGGAG	.	84.0	18.0	90.0	0.0	.	91
IQGAP1	8826	broad.mit.edu;bcgsc.ca	37	15	91020963	91020963	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IQGAP1	NM_003870	exon26	c.T3171C	p.S1057S	TGTAAGTTTCAAC	.	93.0	5.0	94.0	0.0	.	950
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53279675	53279675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IQSEC2	NM_001111125	exon5	c.G2083A	p.D695N	CGTTATCTCCACC	.	214.0	49.0	175.0	0.0	.	178
ITIH3	3699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52835121	52835121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ITIH3	NM_002217	exon11	c.C1342T	p.R448W	TTTGCCCGGCGCA	.	60.0	26.0	79.0	0.0	.	93
JMJD1C	221037	ucsc.edu;bcgsc.ca	37	10	64967085	64967085	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	JMJD1C	NM_032776	exon10	c.C4344T	p.C1448C	GACCTTGCATTCT	.	34.0	4.0	45.0	0.0	.	275
KAT6A	7994	ucsc.edu;bcgsc.ca	37	8	41806816	41806816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_001099412	exon11	c.A1664G	p.Q555R	ATGTGCTGCTGCA	.	34.0	4.0	72.0	0.0	.	.
KIAA0317	9870	ucsc.edu;bcgsc.ca	37	14	75136704	75136704	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KIAA0317	NM_001039479	exon14	c.T1734C	p.A578A	GAAGCGAGCTCGG	.	52.0	5.0	72.0	0.0	.	525
KIAA1522	57648	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	33236078	33236078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KIAA1522	NM_020888	exon6	c.C1298T	p.S433F	CCCTCTCCTCTAA	.	28.0	5.0	35.0	0.0	.	90
KLF11	8462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10188154	10188154	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KLF11	NM_003597	exon3	c.C690T	p.S230S	GGTGTCCTGTCAG	.	62.0	20.0	58.0	0.0	.	228
KLHL21	9903	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6661869	6661869	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KLHL21	NM_014851	exon1	c.A1009T	p.I337F	CGTAGATGTCATT	.	82.0	25.0	101.0	1.0	.	514
KLRC4-KLRK1	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10541374	10541374	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_001199805	exon7	c.C36T	p.S12S	ACCCCAGCTGTGT	.	46.0	8.0	69.0	0.0	.	.
LARGE	9215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	33670547	33670547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LARGE	NM_004737	exon16	c.G2137A	p.D713N	TAATGTCGAAGCT	.	187.0	41.0	148.0	0.0	.	92
LBR	3930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225609820	225609820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LBR	NM_194442	exon3	c.G325T	p.A109S	TCCTTGCTTCCTT	.	76.0	16.0	69.0	0.0	.	228
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141598619	141598619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LRP1B	NM_018557	exon30	c.G4982A	p.R1661H	AAATTACGTGACA	.	170.0	45.0	193.0	0.0	.	311
LRRC32	2615	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76371941	76371941	+	Silent	SNP	G	G	T	rs180783243	alternate_allele	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LRRC32	NM_005512	exon3	c.C696A	p.A232A	CTGAAAGGCCTCG	.	80.0	20.0	85.0	0.0	G|0.999;C|0.001	90
MAMDC4	158056	ucsc.edu;bcgsc.ca	37	9	139755018	139755018	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MAMDC4	NM_206920	exon27	c.G3377C	p.G1126A	AGGATGGTGTCAC	.	45.0	4.0	64.0	0.0	.	156
MAP3K14	9020	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	43367973	43367973	+	RNA	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MAP3K14	.	.	.	.	GGCTCTTCTCCAC	.	281.0	55.0	322.0	0.0	.	1453
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90371908	90371908	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MDN1	NM_014611	exon87	c.A14463G	p.S4821S	TTTGTTTGAATTG	.	565.0	146.0	735.0	0.0	.	100
MIA3	375056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	222802656	222802656	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MIA3	NM_198551	exon4	c.2094delG	p.Q698fs	AATGCAGGGCACA	.	153.0	27.0	147.0	0.0	.	98
MMP15	4324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	58079051	58079051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MMP15	NM_002428	exon10	c.G1711A	p.D571N	TGGCCCGACGTGG	.	70.0	32.0	28.0	0.0	.	713
MSN	4478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	64957171	64957171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MSN	NM_002444	exon10	c.C1222T	p.R408W	GCCTCCCGGGACC	.	324.0	46.0	275.0	0.0	.	1086
MTMR3	8897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30415674	30415674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MTMR3	NM_153050	exon17	c.G2026A	p.A676T	GGGGGTGCCGAGC	.	70.0	18.0	71.0	0.0	.	292
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9087246	9087246	+	Silent	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MUC16	NM_024690	exon1	c.C4569A	p.I1523I	ACTCCTGATTCCT	.	298.0	54.0	210.0	0.0	.	566
MYOCD	93649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12626295	12626295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MYOCD	NM_001146312	exon5	c.G385T	p.V129L	CTTCCTGTGGATT	.	112.0	42.0	145.0	1.0	.	93
NASP	4678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46083194	46083194	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NASP	NM_002482	exon14	c.G2217A	p.P739P	AGAGCCGGAGGTG	.	35.0	12.0	47.0	0.0	.	91
NEK6	10783	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127074912	127074912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NEK6	NM_001166171	exon4	c.C317T	p.A106V	CAGTGGCTCTGAA	.	26.0	6.0	49.0	0.0	.	334
NEO1	4756	broad.mit.edu;bcgsc.ca	37	15	73558728	73558728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NEO1	NM_001172623	exon16	c.A2470G	p.S824G	TATGAGAGTGCTG	.	124.0	6.0	141.0	0.0	.	116
NFATC4	4776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24845640	24845640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NFATC4	NM_001198967	exon10	c.G2386A	p.E796K	GCTTGCGAAACTC	.	108.0	23.0	147.0	0.0	.	92
NFE2L1	4779	hgsc.bcm.edu;bcgsc.ca	37	17	46128958	46128959	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NFE2L1	NM_003204	exon2	c.478_479insC	p.A160fs	GCTGTAGCCCCCC	.	63.0	19.0	65.0	0.0	.	91
NFS1	9054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34286442	34286442	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NFS1	NM_021100	exon2	c.G168A	p.L56L	AGGTCGCAGCACT	.	337.0	51.0	260.0	0.0	.	92
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	5811323	5811323	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NLGN4X	NM_181332	exon6	c.T1986C	p.T662T	GAGGACAGTTGTG	.	896.0	334.0	739.0	1.0	.	195
NMU	10874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56475318	56475318	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NMU	NM_006681	exon4	c.T248G	p.F83C	ATCATAAAGCAAA	.	194.0	33.0	131.0	0.0	.	650
NOS2	4843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26088234	26088234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NOS2	NM_000625	exon23	c.G2824A	p.G942S	AGACGCCGTGGTG	.	133.0	38.0	182.0	0.0	.	156
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32181471	32181471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NOTCH4	NM_004557	exon14	c.G2314T	p.V772L	CAGACACACAGTA	.	115.0	20.0	87.0	0.0	.	1321
NPY5R	4889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164271533	164271533	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NPY5R	NM_006174	exon4	c.T108G	p.S36R	AAGCAGTGTAGAT	.	374.0	89.0	335.0	0.0	.	523
OAS1	4938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	113344971	113344971	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OAS1	NM_001032409	exon1	c.G127T	p.E43X	CTGAAGGAAAGGT	.	305.0	92.0	332.0	0.0	.	70
OR10X1	128367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158549059	158549059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR10X1	NM_001004477	exon1	c.A631G	p.T211A	ATTCTGTGTGGTT	.	235.0	39.0	159.0	0.0	.	69
OR51G1	79324	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4945133	4945133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR51G1	NM_001005237	exon1	c.T437C	p.M146T	AGCCCCATCTTGA	.	50.0	10.0	44.0	0.0	.	70
OR52M1	119772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4567048	4567048	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR52M1	NM_001004137	exon1	c.T628C	p.L210L	CTGGTGTTGATCC	.	374.0	78.0	324.0	0.0	.	68
PCDH8	5100	ucsc.edu;bcgsc.ca	37	13	53422356	53422356	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PCDH8	NM_032949	exon1	c.T216C	p.S72S	GAGCAGAGAGCTG	.	41.0	5.0	33.0	0.0	.	153
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140216086	140216086	+	Silent	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PCDHA7	NM_031852	exon1	c.G2118T	p.A706A	CTGCGCGGTGTCC	.	490.0	279.0	364.0	0.0	.	94
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140222188	140222188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PCDHA8	NM_031856	exon1	c.C1282T	p.R428W	ACCGCGCGGGACG	.	339.0	58.0	322.0	0.0	.	92
PDE8A	5151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85660890	85660890	+	Silent	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PDE8A	NM_002605	exon17	c.T1554A	p.G518G	TCTTGGTCTCAAA	.	406.0	92.0	343.0	0.0	.	94
PEAK1	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	77407621	77407621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_024776	exon8	c.A4118G	p.H1373R	AAGCTGTGATAAT	.	64.0	9.0	78.0	0.0	.	.
PIWIL1	9271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130830386	130830386	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PIWIL1	NM_004764	exon4	c.A279G	p.T93T	GAATACAAGGCAG	.	161.0	28.0	153.0	0.0	.	92
POLE	5426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133240672	133240672	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	POLE	NM_006231	exon23	c.A2624C	p.N875T	ACAAAATTTTCTG	.	214.0	59.0	244.0	0.0	.	233
RAB9A	9367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	13727290	13727290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RAB9A	NM_004251	exon3	c.G425A	p.C142Y	CTTGGTGCAGGGA	.	102.0	20.0	83.0	0.0	.	660
RBM33	155435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	155556582	155556582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RBM33	NM_053043	exon15	c.A3056T	p.Q1019L	GACCACAGCCTGC	.	106.0	26.0	101.0	0.0	.	23
REC8	9985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24646590	24646590	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	REC8	NM_005132	exon10	c.734+1G>T	.	TGCAGAGTAAGGG	.	220.0	51.0	249.0	0.0	.	90
RPP30	10556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	92638835	92638835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RPP30	NM_006413	exon5	c.A286G	p.R96G	TCTTCAAGGGCCC	.	81.0	21.0	129.0	0.0	.	226
SBNO2	22904	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	1109390	1109390	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_014963	exon29	c.G3249A	p.A1083A	CTGCTCCGCCAGC	.	27.0	13.0	12.0	0.0	.	.
SERPIND1	3053	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21133628	21133628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SERPIND1	NM_000185	exon2	c.A28G	p.I10V	CTTCTCATTTTCC	.	36.0	5.0	46.0	0.0	.	414
SERPINE1	5054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100771835	100771835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SERPINE1	NM_000602	exon2	c.A161G	p.N54S	ACCGCAACGTGGT	.	125.0	13.0	100.0	0.0	.	652
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26695027	26695027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SEZ6L	NM_021115	exon5	c.G1240A	p.V414M	GGTGGGGTGGCCC	.	142.0	25.0	95.0	0.0	.	95
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22398984	22398984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SLC17A6	NM_020346	exon12	c.G1447A	p.A483T	CTGATCGCTGCCC	.	319.0	62.0	342.0	0.0	.	580
SLC8A1	6546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	40656071	40656071	+	Silent	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SLC8A1	NM_001252624	exon1	c.A1350T	p.T450T	ATTTGCTGTGCCA	.	70.0	10.0	83.0	0.0	.	93
SREBF1	6720	broad.mit.edu;bcgsc.ca	37	17	17718247	17718247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SREBF1	NM_001005291	exon15	c.A2594G	p.D865G	AGGGCATCCGAGA	.	83.0	6.0	96.0	0.0	.	91
SV2A	9900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149881036	149881036	+	Missense_Mutation	SNP	G	G	A	rs200303127		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SV2A	NM_014849	exon7	c.C1267T	p.R423W	AGGCCCGGACCCC	.	274.0	36.0	173.0	0.0	G|0.999;A|0.000	97
SYMPK	8189	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	46319169	46319169	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SYMPK	NM_004819	exon26	c.C3627T	p.D1209D	CGAGTCGTCATCC	.	113.0	17.0	104.0	0.0	.	91
TCEAL4	79921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102842040	102842040	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TCEAL4	NM_001006935	exon3	c.A437T	p.H146L	CCATACATGATAT	.	227.0	90.0	185.0	0.0	.	130
TCOF1	6949	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	149769583	149769583	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TCOF1	NM_001135243	exon19	c.T3180C	p.T1060T	AGCCACTCAGGTA	.	146.0	88.0	82.0	2.0	.	155
TDRD1	56165	broad.mit.edu;bcgsc.ca	37	10	115963274	115963274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TDRD1	NM_198795	exon8	c.A929G	p.D310G	AAAAAGACTATAT	.	109.0	5.0	99.0	0.0	.	90
THRAP3	9967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	36757042	36757042	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	THRAP3	NM_005119	exon6	c.C1813T	p.Q605X	AAGGAACAGGAGT	.	213.0	67.0	267.0	0.0	.	663
TMEM151B	441151	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44241031	44241031	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_001137560	exon2	c.A364T	p.M122L	CTGCTCATGTTGT	.	165.0	28.0	155.0	1.0	.	.
TREX2	11219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152710779	152710779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TREX2	NM_080701	exon2	c.G110A	p.R37H	GAGGAGCGGTGGA	.	177.0	56.0	115.0	0.0	.	227
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179440745	179440745	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TTN	NM_001267550	exon326	c.C70114G	p.P23372A	GAGCAGGACGACC	.	56.0	13.0	68.0	0.0	.	636
TUBA8	51807	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18604433	18604433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TUBA8	NM_018943	exon2	c.G191A	p.R64Q	TGCCCCGGGCCGT	.	203.0	80.0	189.0	1.0	.	90
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216073535	216073535	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	USH2A	NM_206933	exon40	c.G7476A	p.S2492S	GCTTAACGATGCA	.	83.0	19.0	71.0	0.0	.	115
VAT1L	57687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77896666	77896666	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	VAT1L	NM_020927	exon4	c.T601A	p.C201S	CAGCTGTGTTCCA	.	137.0	39.0	133.0	0.0	.	90
VEPH1	79674	ucsc.edu;bcgsc.ca	37	3	157031412	157031412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	VEPH1	NM_001167912	exon11	c.A2008G	p.K670E	TTACCTTCTGCTG	.	40.0	4.0	41.0	0.0	.	155
VWA3B	200403	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98744813	98744813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	VWA3B	NM_144992	exon6	c.G814T	p.A272S	TTCAACGCCAGAG	.	112.0	23.0	151.0	1.0	.	139
ZBED1	9189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	2407376	2407376	+	Missense_Mutation	SNP	G	G	A	rs199678782		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZBED1	NM_001171135	exon2	c.C1385T	p.T462M	TCGGGCGTCTCCT	.	387.0	84.0	319.0	0.0	G|0.999;A|0.001	40
ZCCHC4	29063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	25351159	25351159	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZCCHC4	NM_024936	exon7	c.G805T	p.E269X	AAAGGCGAAGGAA	.	321.0	41.0	228.0	0.0	.	70
ZDHHC17	23390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	77203532	77203532	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_015336	exon5	c.T438C	p.Y146Y	GAAATATGGTGCA	.	90.0	26.0	71.0	0.0	.	.
ZDHHC5	25921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57466174	57466174	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZDHHC5	NM_015457	exon11	c.C1266T	p.S422S	ACTATCCAGTGGC	.	117.0	19.0	111.0	0.0	.	226
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77765482	77765482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZFHX4	NM_024721	exon10	c.C6325T	p.L2109F	GCAGACCTCACCC	.	158.0	37.0	135.0	0.0	.	98
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	22155549	22155549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF208	NM_007153	exon4	c.A2287G	p.T763A	TAAGGGTTGAGGA	.	46.0	16.0	47.0	0.0	.	7
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22156821	22156821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF208	NM_007153	exon4	c.A1015G	p.K339E	AGGGCTTCTCTCC	.	131.0	24.0	96.0	0.0	.	7
ZNF449	203523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134494230	134494230	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF449	NM_152695	exon5	c.G786A	p.L262L	CATTTTGCAAAAA	.	476.0	71.0	439.0	0.0	.	132
ZNF540	163255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38102620	38102620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF540	NM_152606	exon5	c.A439G	p.K147E	GTCTCTAAAAAAA	.	183.0	73.0	168.0	0.0	.	153
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	88964869	88964869	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF804B	NM_181646	exon4	c.C2573A	p.S858X	CTTACTCAATAGA	.	152.0	21.0	130.0	0.0	.	101
C1orf65	164127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223567608	223567609	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	.	.	.	p.L264P	TGGTGCTGACCCG	.	182.0	26.0	142.0	0.0	.	.
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	101666978	101666979	+	Missense_Mutation	DNP	CC	CC	GA	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	.	.	.	p.D253H	CCTCATCCAGGTT	.	146.0	55.0	160.0	0.0	.	.