Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu	37	7	48318518	48318518	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ABCA13	NM_152701	exon18	c.T7727A	p.L2576X	CTACTTTAAAAAA	.	167.0	17.0	18.0	0.0	.	521
APOH	350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	64222231	64222231	+	Missense_Mutation	SNP	G	G	A	rs55645281		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	APOH	NM_000042	exon3	c.C253T	p.P85S	CAAAAGGACATAC	.	111.0	76.0	33.0	0.0	.	90
ARSA	410	bcgsc.ca;mdanderson.org	37	22	51065802	51065802	+	Missense_Mutation	SNP	C	C	A	rs74315458	bycluster;alternate_allele	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ARSA	NM_001085426	exon3	c.G257T	p.R86L	CCCATCCGAACCG	.	9.0	3.0	57.0	0.0	.	92
ATP13A5	344905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193061790	193061790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ATP13A5	NM_198505	exon9	c.C869T	p.P290L	TTTCCTGGAAGAA	.	209.0	96.0	41.0	0.0	.	144
C21orf59	56683	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33974647	33974647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	C21orf59	NM_021254	exon6	c.A697G	p.I233V	TAATAATAGGCTC	.	67.0	21.0	85.0	1.0	.	90
CACNA1D	776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	53707151	53707151	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CACNA1D	NM_001128840	exon8	c.C1218T	p.S406S	ATTGAGCGGGTAA	.	978.0	485.0	135.0	0.0	.	100
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	86114753	86114753	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CADM2	NM_001167674	exon9	c.1064-2A>G	.	TTTTCCAGATCCT	.	249.0	110.0	46.0	0.0	.	228
CGREF1	10669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27325451	27325451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CGREF1	NM_001166239	exon3	c.C89A	p.S30Y	ACTTCAGAGTCTG	.	48.0	10.0	140.0	0.0	.	91
CLCN1	1180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143039472	143039472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CLCN1	NM_000083	exon16	c.A1804G	p.T602A	AAATATACCATCT	.	158.0	57.0	20.0	0.0	.	156
CPB1	1360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148559613	148559613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CPB1	NM_001871	exon6	c.G478A	p.G160S	TAGGTTGGCAAAG	.	212.0	93.0	35.0	0.0	.	92
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	113347573	113347574	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CSMD3	NM_198123	exon45	c.7150_7151insT	p.V2384fs	TGAGCACAAAAAA	.	120.0	44.0	30.0	0.0	.	1132
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	CTNNB1,NS,Wilms_tumour,0	CTNNB1	NM_001098209	exon7	c.A1004T	p.K335I	ACGAAAAACTACT	.	175.0	89.0	15.0	0.0	.	24361
CYB5R3	1727	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43024254	43024254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CYB5R3	NM_001171660	exon5	c.G466A	p.A156T	CTCCAGCGGGAAA	.	78.0	8.0	207.0	0.0	.	91
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90318036	90318036	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DAPK1	NM_004938	exon25	c.G2964A	p.L988L	GTCGCTGCAGCAG	.	55.0	17.0	302.0	0.0	.	359
DENND6A	201627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57646514	57646514	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_152678	exon7	c.C672T	p.H224H	TGGCAGGTGTAAT	.	400.0	170.0	103.0	0.0	.	.
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231830097	231830097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DISC1	NM_001164541	exon2	c.C593A	p.T198N	CCCCAACCCCTCC	.	114.0	21.0	450.0	0.0	.	91
DNAJA2	10294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	46991020	46991020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DNAJA2	NM_005880	exon9	c.G1160T	p.R387M	TCACGCCTCTGAC	.	143.0	66.0	18.0	0.0	.	226
EBNA1BP2	10969	ucsc.edu;bcgsc.ca	37	1	43637633	43637633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	EBNA1BP2	NM_001159936	exon3	c.A239G	p.D80G	AACGCATCCTGCA	.	38.0	4.0	201.0	0.0	.	90
ELMSAN1	91748	broad.mit.edu;bcgsc.ca	37	14	74205467	74205467	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_194278	exon2	c.A1245G	p.R415R	TGCTAGTCTCTCC	.	95.0	5.0	451.0	1.0	.	.
EPG5	57724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43435550	43435550	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	EPG5	NM_020964	exon43	c.C7545G	p.P2515P	AGCTTTGGGGGTC	.	75.0	11.0	27.0	0.0	.	580
EPHA3	2042	broad.mit.edu;bcgsc.ca	37	3	89156983	89156983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	EPHA3	NM_005233	exon1	c.G85A	p.E29K	TCCAATGAAGGTA	.	87.0	5.0	216.0	1.0	.	1500
FBXL7	23194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	15937055	15937055	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FBXL7	NM_012304	exon4	c.1236delC	p.C412fs	CAAATGCCCTTTG	.	69.0	17.0	329.0	0.0	.	228
FDXACB1	91893	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	111746748	111746748	+	Missense_Mutation	SNP	G	G	A	rs189903941		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FDXACB1	NM_138378	exon5	c.C773T	p.P258L	TTTAGCGGGAAAA	.	110.0	35.0	26.0	0.0	G|0.999;A|0.001	22
FHDC1	85462	ucsc.edu;bcgsc.ca	37	4	153897270	153897270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FHDC1	NM_033393	exon11	c.A2827G	p.N943D	CGCCAGAACTCCG	.	44.0	4.0	244.0	0.0	.	136
FRG1	2483	bcgsc.ca;mdanderson.org	37	4	190876283	190876283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	FRG1	NM_004477	exon5	c.C409A	p.Q137K	AGAGAACAATGGG	.	468.0	35.0	123.0	2.0	.	90
GAREM	64762	broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	29867589	29867589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_022751	exon4	c.A971G	p.H324R	CAGTGATGGACCA	.	110.0	25.0	285.0	1.0	.	.
GDPD4	220032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76969478	76969478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GDPD4	NM_182833	exon10	c.G817A	p.D273N	GGAAATCCCAGTT	.	164.0	93.0	33.0	0.0	.	69
GJB1	2705	hgsc.bcm.edu;broad.mit.edu	37	X	70443636	70443637	+	In_Frame_Ins	INS	-	-	TCATCT	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GJB1	NM_001097642	exon2	c.79_80insTCATCT	p.V27delinsVIF	CTCTCGGTCATCT	.	93.0	40.0	322.0	0.0	.	193
GMIP	51291	ucsc.edu;bcgsc.ca	37	19	19744903	19744903	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GMIP	NM_016573	exon19	c.A2181G	p.A727A	GCTGGCTGCCCGC	.	27.0	4.0	160.0	0.0	.	91
GNB5	10681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52476791	52476791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GNB5	NM_016194	exon2	c.A83T	p.K28M	GACTTCTTGAAAA	.	77.0	37.0	25.0	0.0	.	227
GRAMD4	23151	ucsc.edu;bcgsc.ca	37	22	47058978	47058978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GRAMD4	NM_015124	exon5	c.T508C	p.F170L	AAGTGGTTCTACG	.	29.0	4.0	100.0	0.0	.	23
GRIN3B	116444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1004576	1004576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GRIN3B	NM_138690	exon3	c.G1076A	p.S359N	CAGGCAGCTCCCA	.	44.0	12.0	225.0	0.0	.	90
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65214794	65214794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	HELZ	NM_014877	exon4	c.G127T	p.D43Y	TGAAGTCTGCCAT	.	169.0	33.0	31.0	0.0	.	92
HTR7	3363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	92508894	92508894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	HTR7	NM_019860	exon2	c.G997A	p.V333I	CCCCGACGATGAT	.	156.0	43.0	252.0	0.0	.	91
IGFALS	3483	ucsc.edu;bcgsc.ca	37	16	1841215	1841215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	IGFALS	NM_001146006	exon2	c.C1318A	p.R440S	GCGGGCGGATGCG	.	33.0	4.0	178.0	0.0	.	90
INTS4	92105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	77672039	77672039	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	INTS4	NM_033547	exon5	c.A617T	p.D206V	TCTTGGTCACTGA	.	195.0	23.0	53.0	0.0	.	92
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	124165646	124165646	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KALRN	NM_003947	exon21	c.C3460G	p.L1154V	TTTTACCTCTCAA	.	77.0	29.0	13.0	0.0	.	738
KCNH1	3756	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	211093326	211093326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KCNH1	NM_172362	exon7	c.A1118G	p.E373G	CCATATTCAATGT	.	156.0	33.0	481.0	1.0	.	94
KCTD20	222658	hgsc.bcm.edu;mdanderson.org	37	6	36447368	36447368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KCTD20	NM_173562	exon5	c.G538T	p.D180Y	TTACAGGATTATT	.	41.0	11.0	11.0	0.0	.	92
KLF9	687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73027906	73027906	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KLF9	NM_001206	exon1	c.C374G	p.S125C	AGGAGGGAGAGCG	.	149.0	42.0	558.0	0.0	.	90
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	129637033	129637033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LAMA2	NM_000426	exon26	c.G3862A	p.V1288I	ATTATCGTCAGGC	.	52.0	11.0	12.0	0.0	.	162
LARGE	9215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	33960897	33960897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LARGE	NM_004737	exon7	c.G724A	p.D242N	CCGTGTCAAGGAC	.	119.0	46.0	13.0	0.0	.	92
LILRB5	10990	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54760149	54760149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LILRB5	NM_001081442	exon4	c.G412A	p.G138R	CATTTCCTCCTGA	.	35.0	10.0	96.0	1.0	.	92
LMAN1	3998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56998712	56998712	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LMAN1	NM_005570	exon12	c.G1434T	p.T478T	GTGGACCGTAGAC	.	185.0	21.0	40.0	0.0	.	91
MLXIPL	51085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73020290	73020290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	MLXIPL	NM_032954	exon6	c.T770C	p.F257S	ATGGTGAAGAGAG	.	54.0	28.0	220.0	1.0	.	91
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1077628	1077628	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	MUC2	NM_002457	exon3	c.G378A	p.L126L	CGGGCTGCTCATT	.	82.0	22.0	382.0	1.0	.	90
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	19955620	19955620	+	Silent	SNP	C	C	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NAV2	NM_001244963	exon8	c.C1899G	p.S633S	ACACTCCAGTTCC	.	50.0	30.0	316.0	0.0	.	96
NEUROD4	58158	ucsc.edu;mdanderson.org	37	12	55420793	55420793	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NEUROD4	NM_021191	exon2	c.T570C	p.S190S	TAAATCTCCTATT	.	43.0	8.0	17.0	0.0	.	94
NFRKB	4798	broad.mit.edu;bcgsc.ca	37	11	129762615	129762615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NFRKB	NM_006165	exon1	c.G169A	p.E57K	CATCCTCCAGAAG	.	81.0	5.0	138.0	0.0	.	93
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	5811266	5811266	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NLGN4X	NM_181332	exon6	c.C2043T	p.V681V	CGCCCCGACGGCA	.	252.0	95.0	597.0	1.0	.	195
OR51I2	390064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5474986	5474986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	OR51I2,NS,carcinoma,-1	OR51I2	NM_001004754	exon1	c.C268T	p.R90C	AATGCCCGCAACA	.	123.0	28.0	97.0	0.0	.	72
OSBPL11	114885	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	125313601	125313605	+	Frame_Shift_Del	DEL	CTCTC	CTCTC	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	CTCTC	CTCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	OSBPL11	NM_022776	exon1	c.40_44del	p.14_15del	CCTTCGCTCTCCG	.	155.0	36.0	392.0	0.0	.	135
PDE4B	5142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	66723358	66723358	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PDE4B	NM_001037341	exon5	c.T505G	p.F169V	ACTCCTTTTGCCC	.	252.0	164.0	50.0	0.0	.	92
PPP2R2C	5522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	6335429	6335429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PPP2R2C	NM_181876	exon7	c.C820T	p.R274C	ATGAGCGGTTACT	.	103.0	26.0	434.0	1.0	.	1084
PRELID1	27166	bcgsc.ca;mdanderson.org	37	5	176731012	176731012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PRELID1	NM_013237	exon1	c.G26T	p.S9I	GCCAGAGCGTGCT	.	9.0	3.0	54.0	0.0	.	90
PTPRF	5792	ucsc.edu;bcgsc.ca	37	1	44069357	44069357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PTPRF	NM_002840	exon16	c.A2534G	p.E845G	CCAAGGAACTGCC	.	46.0	4.0	178.0	0.0	.	232
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121684588	121684588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PTPRZ1	NM_002851	exon23	c.C6050T	p.P2017L	CTGGACCAGCAGG	.	138.0	24.0	27.0	0.0	.	699
RAB7A	7879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128516808	128516808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RAB7A	NM_004637	exon3	c.A76G	p.N26D	CTCATGAACCAGT	.	205.0	33.0	29.0	0.0	.	227
RXRA	6256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137328351	137328351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RXRA	NM_002957	exon10	c.C1280T	p.S427F	TGCGCTCCATCGG	.	78.0	23.0	284.0	0.0	.	188
RXRB	6257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33166198	33166198	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RXRB	NM_021976	exon3	c.527delC	p.P176fs	TCTTCAGGGGGGC	.	57.0	32.0	180.0	0.0	.	189
SCUBE3	222663	ucsc.edu;bcgsc.ca	37	6	35209660	35209660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SCUBE3	NM_152753	exon12	c.A1390G	p.N464D	AATGGGAACAGCA	.	42.0	4.0	106.0	0.0	.	91
SEMA3E	9723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83021890	83021890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SEMA3E	NM_012431	exon14	c.A1648G	p.T550A	TGCCTGTTGGGTA	.	153.0	76.0	44.0	0.0	.	93
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48063289	48063289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SEMA6D	NM_153618	exon19	c.C2529A	p.N843K	CTCAAACTCCAAT	.	111.0	36.0	23.0	0.0	.	138
SGCE	8910	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	94232701	94232701	+	Silent	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SGCE	NM_001099401	exon6	c.A726T	p.P242P	ATTCTGTGGATTT	.	292.0	107.0	47.0	0.0	.	91
SGTA	6449	ucsc.edu;bcgsc.ca	37	19	2761469	2761469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SGTA	NM_003021	exon8	c.T688C	p.F230L	TCATGAAGCCAGG	.	36.0	4.0	206.0	0.0	.	91
SIX2	10736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	45233509	45233509	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SIX2	NM_016932	exon2	c.T676A	p.S226T	TGGATGATGAGTG	.	16.0	12.0	114.0	0.0	.	91
SLITRK1	114798	ucsc.edu;bcgsc.ca;mdanderson.org	37	13	84454187	84454187	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SLITRK1	NM_052910	exon1	c.C1456T	p.L486L	CAGGCAGGGACCT	.	122.0	26.0	211.0	2.0	.	94
SMCO3	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14959587	14959587	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_001013698	exon2	c.G28C	p.E10Q	GGTTCTCTGGGTA	.	94.0	72.0	41.0	0.0	.	.
SOCS6	9306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	67992584	67992585	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SOCS6	NM_004232	exon2	c.680_681insC	p.L227fs	TGCCTTTAGATGA	.	110.0	33.0	185.0	0.0	.	721
SOCS6	9306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	67992586	67992606	+	In_Frame_Del	DEL	GATGAGGGGATGTATCCTTTG	GATGAGGGGATGTATCCTTTG	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	GATGAGGGGATGTATCCTTTG	GATGAGGGGATGTATCCTTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SOCS6	NM_004232	exon2	c.682_702del	p.228_234del	CCTTTAGATGAGG	.	98.0	28.0	186.0	0.0	.	721
STON1	11037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	48809395	48809395	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	STON1	NM_001198595	exon3	c.G1623A	p.V541V	ATACGTGGAACTT	.	285.0	43.0	56.0	0.0	.	91
SYNE3	161176	ucsc.edu;bcgsc.ca	37	14	95923645	95923645	+	Silent	SNP	G	G	T	rs187376318	alternate_allele	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_152592	exon4	c.C658A	p.R220R	GCTCCCGGGCCAC	.	35.0	4.0	283.0	0.0	G|0.999;A|0.000	.
TACR2	6865	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71175920	71175920	+	Missense_Mutation	SNP	C	C	T	rs151093941		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TACR2	NM_001057	exon1	c.G160A	p.V54I	AGATGACGATGGC	.	99.0	16.0	431.0	1.0	C|1.000;T|0.000	522
TBX3	6926	ucsc.edu;bcgsc.ca	37	12	115112603	115112603	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TBX3	NM_016569	exon7	c.C1137T	p.A379A	GCTCTCGGCCTCG	.	41.0	4.0	194.0	0.0	.	93
TMEM132E	124842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	32956067	32956067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TMEM132E	NM_207313	exon5	c.C912A	p.D304E	GCTGGACTTTGAA	.	138.0	27.0	466.0	0.0	.	68
TP63	8626	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	3	189349323	189349323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TP63	NM_001114979	exon1	c.C19T	p.R7W	ACTTCACGGTGTG	.	112.0	9.0	17.0	0.0	.	421
TRIM55	84675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67067941	67067941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TRIM55	NM_033058	exon10	c.A1608C	p.L536F	TACTTTAATGGGT	.	253.0	120.0	59.0	0.0	.	230
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179559565	179559565	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TTN	NM_001267550	exon116	c.G31339C	p.V10447L	TGGTGACTTGAAC	.	339.0	126.0	53.0	0.0	.	636
TVP23B	51030	broad.mit.edu;mdanderson.org	37	17	18694221	18694221	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_016078	exon3	c.A108G	p.A36A	AGTAGCATCGTTT	.	240.0	28.0	47.0	0.0	.	.
UGGT2	55757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	96599294	96599294	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	UGGT2	NM_020121	exon15	c.A1674G	p.V558V	CACGTGTACTATA	.	261.0	105.0	39.0	0.0	.	92
WASF2	10163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27739169	27739169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	WASF2	NM_006990	exon7	c.G721A	p.V241M	CATCCACGTTTTC	.	228.0	88.0	49.0	0.0	.	228
ZNF326	284695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	90487903	90487903	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ZNF326	NM_182976	exon11	c.A1400C	p.K467T	TTGTTAAGGTAAG	.	395.0	76.0	72.0	0.0	.	91
SMIM7	79086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16770916	16770917	+	Missense_Mutation	DNP	GA	GA	TT	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	.	.	.	p.I2K	GTCTCCGATCATC	.	51.0	13.0	304.0	0.0	.	.