Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq AAK1 22848 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 69757151 69757151 + Missense_Mutation SNP T T A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . AAK1 NM_014911 exon8 c.A860T p.H287L AGGCAGTGCATGT . 163.0 61.0 215.0 1.0 . 333 ACSL1 2180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 185709825 185709825 + Missense_Mutation SNP A A T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . ACSL1 NM_001995 exon3 c.T256A p.Y86N CATCATAGAAATA . 40.0 16.0 49.0 0.0 . 92 ACVR1C 130399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 158390474 158390474 + Missense_Mutation SNP T T C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . ACVR1C NM_145259 exon9 c.A1438G p.K480E TAGTCTTCTTAAT . 64.0 25.0 54.0 0.0 . 1006 ADAM21 8747 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 70925176 70925176 + Missense_Mutation SNP T T G novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . ADAM21 NM_003813 exon2 c.T960G p.I320M ACCTATTGATTGT . 178.0 82.0 223.0 0.0 . 92 ADAMTS20 80070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 43792900 43792900 + Missense_Mutation SNP C C A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . ADAMTS20 NM_025003 exon29 c.G4421T p.C1474F GAAGGGCATCTGA . 147.0 51.0 177.0 0.0 . 795 ADAMTS9 56999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 3 64579956 64579956 + Nonsense_Mutation SNP C C T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . ADAMTS9 NM_182920 exon28 c.G4334A p.W1445X GTACTCCATGCAG . 144.0 55.0 148.0 0.0 . 230 ADCY6 112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 49170256 49170256 + Missense_Mutation SNP T T C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . ADCY6 NM_020983 exon7 c.A1490G p.N497S ACATCATTGGACC . 95.0 36.0 131.0 0.0 . 90 ANGPTL1 9068 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 178820448 178820448 + Missense_Mutation SNP T T C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . ANGPTL1 NM_004673 exon6 c.A1292G p.N431S GCGCAGTTTCCTT . 175.0 91.0 119.0 0.0 . 90 ANO9 338440 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 432029 432029 + Missense_Mutation SNP C C T rs139380371 TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . ANO9 NM_001012302 exon5 c.G376A p.V126I TGACAACGAAGTT . 89.0 30.0 86.0 0.0 C|1.000;T|0.000 227 AOX1 316 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 201478589 201478589 + Missense_Mutation SNP T T G novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . AOX1 NM_001159 exon15 c.T1511G p.L504W CCCTTTTGGGCTC . 178.0 67.0 159.0 0.0 . 96 AP3S1 1176 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 115249063 115249063 + Missense_Mutation SNP G G C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . AP3S1 NM_001284 exon6 c.G458C p.G153A AGGCTGGCTTAGC . 97.0 22.0 110.0 1.0 . 90 APBB2 323 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 41015987 41015987 + Missense_Mutation SNP T T C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . APBB2 NM_173075 exon6 c.A448G p.I150V GTAAAATCTCACA . 147.0 60.0 184.0 1.0 . 92 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 21231070 21231070 + Missense_Mutation SNP G G T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . APOB NM_000384 exon26 c.C8670A p.F2890L TTTGTGGAAGTAT . 141.0 53.0 157.0 0.0 . 175 ARMCX1 51309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 100808329 100808329 + Missense_Mutation SNP C C A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . ARMCX1 NM_016608 exon4 c.C416A p.A139E CCCTTGCACCGAG . 73.0 35.0 92.0 0.0 . 134 ASCC2 84164 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 30218403 30218403 + Missense_Mutation SNP G G T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . ASCC2 NM_032204 exon5 c.C462A p.F154L AAAGAGGAAGTTA . 78.0 31.0 89.0 0.0 . 90 ATP7B 540 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 52548363 52548363 + Silent SNP G G A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . ATP7B NM_000053 exon2 c.C993T p.A331A CCCTTCGGCTCCA . 38.0 7.0 69.0 0.0 . 92 BIRC6 57448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 32602706 32602706 + Missense_Mutation SNP G G T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . BIRC6 NM_016252 exon2 c.G376T p.V126F GATAAAGTTATAT . 157.0 37.0 167.0 0.0 . 233 BTAF1 9044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 93722349 93722349 + Missense_Mutation SNP C C G novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . BTAF1 NM_003972 exon12 c.C1318G p.Q440E GGACTCCAGGATC . 375.0 150.0 405.0 0.0 . 92 C7 730 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 40981550 40981550 + Missense_Mutation SNP A A T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . C7 NM_000587 exon18 c.A2407T p.S803C GGGTTTAGCATTT . 151.0 70.0 205.0 0.0 . 22 CEP120 153241 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 122725672 122725672 + Missense_Mutation SNP C C T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . CEP120 NM_153223 exon9 c.G1201A p.E401K CACTTTCTGTTGC . 282.0 100.0 339.0 0.0 . 91 CHD4 1108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 6692504 6692504 + Missense_Mutation SNP T T C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . CHD4 NM_001273 exon26 c.A3920G p.E1307G ACACTTTCTTCCT . 159.0 55.0 180.0 0.0 . 228 CNTNAP3 79937 broad.mit.edu;bcgsc.ca 37 9 39099959 39099959 + Missense_Mutation SNP C C A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . CNTNAP3 NM_033655 exon18 c.G2944T p.V982F AGGTGACCCCCCT . 272.0 117.0 285.0 0.0 . 91 COL6A6 131873 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 130286894 130286894 + Missense_Mutation SNP G G T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . COL6A6 NM_001102608 exon5 c.G1847T p.C616F CAGCTTGCAAAGA . 78.0 34.0 105.0 2.0 . 76 DACT1 51339 broad.mit.edu;mdanderson.org 37 14 59112758 59112758 + Nonsense_Mutation SNP G G T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . DACT1 NM_016651 exon4 c.G1417T p.E473X ACAGGGGAGTCCC . 28.0 8.0 29.0 0.0 . 291 DCAF4L2 138009 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 88885313 88885313 + Missense_Mutation SNP A A G novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . DCAF4L2 NM_152418 exon1 c.T887C p.L296P TCCCACAGCTTGA . 189.0 48.0 214.0 0.0 . 91 DNAH6 1768 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 84931193 84931193 + Silent SNP C C T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . DNAH6 NM_001370 exon51 c.C8232T p.V2744V TTAGGTCCGTAAC . 62.0 29.0 73.0 0.0 . 69 DSCAM 1826 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 41719859 41719859 + Silent SNP G G T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . DSCAM NM_001271534 exon6 c.C948A p.A316A GATGGTGGCTTTC . 56.0 21.0 69.0 0.0 . 101 E2F6 1876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 11593707 11593707 + Splice_Site SNP C C G novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . E2F6 NM_198256 exon4 c.380+1G>C . AACTCACATCCAT . 113.0 38.0 186.0 0.0 . 838 EGFR 1956 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 55273125 55273125 + Missense_Mutation SNP A A T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . EGFR NM_005228 exon28 c.A3448T p.T1150S AACAGCACATTCG . 129.0 48.0 143.0 1.0 . 44910 EHHADH 1962 hgsc.bcm.edu;bcgsc.ca 37 3 184910328 184910328 + Missense_Mutation SNP G G T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . EHHADH NM_001966 exon7 c.C1858A p.L620I GTTCAAGGATCTC . 106.0 7.0 123.0 0.0 . 93 EHHADH 1962 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 184910910 184910910 + Missense_Mutation SNP G G A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . EHHADH NM_001966 exon7 c.C1276T p.H426Y CCAAGTGAGGACG . 169.0 15.0 194.0 0.0 . 93 EHHADH 1962 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 184910913 184910913 + Missense_Mutation SNP G G A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . EHHADH NM_001966 exon7 c.C1273T p.P425S AGTGAGGACGATC . 164.0 13.0 193.0 0.0 . 93 EHHADH 1962 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 184910061 184910061 + Silent SNP G G A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . EHHADH NM_001966 exon7 c.C2125T p.L709L CTTTCAGGGGAGG . 150.0 12.0 146.0 0.0 . 93 EHHADH 1962 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 184910094 184910094 + Missense_Mutation SNP G G C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . EHHADH NM_001966 exon7 c.C2092G p.L698V TTTTTAGATAGTC . 140.0 12.0 156.0 0.0 . 93 EHHADH 1962 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 184910834 184910834 + Missense_Mutation SNP G G A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . EHHADH NM_001966 exon7 c.C1352T p.S451F GGGGAAGAGTATT . 173.0 11.0 184.0 0.0 . 93 EHHADH 1962 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 184911086 184911086 + Missense_Mutation SNP G G A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . EHHADH NM_001966 exon7 c.C1100T p.S367L ACAGATGAAGTTA . 203.0 14.0 176.0 0.0 . 93 EIF2D 1939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 206772954 206772954 + Silent SNP G G A rs114245341 byfrequency TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . EIF2D NM_006893 exon10 c.C1065T p.F355F TATGACGAAAGAT . 144.0 36.0 71.0 0.0 G|0.999;A|0.001 92 ERF 2077 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 42753847 42753847 + Silent SNP A A C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . ERF NM_006494 exon4 c.T417G p.G139G GTGGCTACCACCC . 46.0 22.0 74.0 0.0 . 658 FAM205A 259308 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 34725816 34725816 + Missense_Mutation SNP A A T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . . NM_001141917 exon4 c.T1421A p.L474H AAGGAGAGCTCAT . 296.0 54.0 207.0 0.0 . . FAM58A 92002 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 152857988 152857988 + Silent SNP G G T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . FAM58A . . . . AGCCTCGACCTCG . 167.0 79.0 161.0 0.0 . 130 FLOT1 10211 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 30709635 30709635 + Missense_Mutation SNP C C T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . FLOT1 NM_005803 exon3 c.G53A p.R18Q GGGCTTCGGCAGA . 80.0 37.0 91.0 0.0 . 90 FRYL 285527 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 48578067 48578067 + Missense_Mutation SNP C C T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . FRYL NM_015030 exon24 c.G2701A p.G901S TATAGCCGCTATC . 71.0 5.0 89.0 0.0 . 69 GFRAL 389400 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 55198738 55198738 + Silent SNP A A G novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . GFRAL NM_207410 exon3 c.A312G p.K104K CAATAAATCAGGT . 20.0 11.0 32.0 0.0 . 154 HEATR5B 54497 broad.mit.edu;bcgsc.ca 37 2 37283748 37283748 + Missense_Mutation SNP T T C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . HEATR5B NM_019024 exon16 c.A2234G p.N745S GCACTGTTTGGCT . 147.0 6.0 149.0 0.0 . 142 IDUA 3425 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 994398 994398 + Splice_Site SNP A A T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . IDUA NM_000203 exon3 c.300-2A>T . TTCTGCAGGGGGT . 212.0 87.0 223.0 0.0 . 91 KIF1A 547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 241712532 241712532 + Missense_Mutation SNP G G C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . KIF1A NM_001244008 exon13 c.C1179G p.D393E CTCACTGTCAGTG . 87.0 34.0 114.0 0.0 . 91 KRT27 342574 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 38933922 38933922 + Missense_Mutation SNP C C A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . KRT27 NM_181537 exon6 c.G1035T p.Q345H CTGGATCTGTGCC . 133.0 69.0 145.0 0.0 . 90 LOXL4 84171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 100017553 100017553 + Missense_Mutation SNP G G T rs11189525 byfrequency TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . LOXL4 NM_032211 exon8 c.C1114A p.P372T GGATGGGCCCTAG . 133.0 59.0 144.0 0.0 G|0.998;T|0.002 230 LRFN5 145581 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 42357103 42357103 + Missense_Mutation SNP A A T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . LRFN5 NM_152447 exon3 c.A1275T p.E425D GGCAGAAGCTACA . 141.0 59.0 166.0 0.0 . 97 LRRC3 81543 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 45876637 45876638 + Frame_Shift_Ins INS - - C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . LRRC3 NM_030891 exon2 c.110_111insC p.C37fs AGCCCTGCCGGTG . 33.0 10.0 46.0 0.0 . 90 MESDC2 23184 broad.mit.edu;mdanderson.org 37 15 81282119 81282119 + Missense_Mutation SNP C C T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . MESDC2 NM_015154 exon1 c.G14A p.R5K GCCCACCTGGAAG . 9.0 3.0 23.0 0.0 . 90 MIR194-2 406970 broad.mit.edu;ucsc.edu;mdanderson.org 37 11 64658908 64658908 + RNA SNP A A C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . . . . . . GCGGGAACCAATT . 102.0 30.0 112.0 1.0 . . MRPS33 51650 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 140710231 140710231 + Missense_Mutation SNP A A G novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . MRPS33 NM_016071 exon2 c.T203C p.L68P AGTCCAAGAAATC . 139.0 58.0 179.0 1.0 . 90 NT5C3A 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 33054407 33054407 + Missense_Mutation SNP C C A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . . NM_001002010 exon9 c.G946T p.D316Y CAATATCATAAGA . 46.0 8.0 46.0 0.0 . . PARD3 56288 ucsc.edu;bcgsc.ca 37 10 34636998 34636998 + Missense_Mutation SNP T T C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . PARD3 NM_001184792 exon15 c.A2113G p.T705A ACGCTGTTTCAAT . 43.0 4.0 43.0 0.0 . 92 PCDHA8 56140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140222268 140222268 + Silent SNP G G A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . PCDHA8 NM_031856 exon1 c.G1362A p.A454A TCCGGCGTTCGCG . 353.0 142.0 428.0 0.0 . 92 PCLO 27445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 82580517 82580517 + Silent SNP T T G novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . PCLO NM_014510 exon6 c.A9387C p.S3129S AGGTAATGAAGTC . 153.0 57.0 184.0 0.0 . 29 PTPN9 5780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 75798215 75798215 + Missense_Mutation SNP G G C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . PTPN9 NM_002833 exon7 c.C769G p.H257D CTGGGTGGCCGTT . 207.0 83.0 203.0 0.0 . 226 RAPH1 65059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 204304792 204304792 + Missense_Mutation SNP G G A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . RAPH1 NM_213589 exon14 c.C3121T p.L1041F GTTGGAGAACTCC . 64.0 22.0 114.0 0.0 . 1151 RBM19 9904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 114386746 114386746 + Missense_Mutation SNP C C T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . RBM19 NM_001146699 exon10 c.G1168A p.G390R TCTCCCCGAGTAT . 260.0 93.0 321.0 0.0 . 95 RNF123 63891 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 49739578 49739578 + Splice_Site SNP G G A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . RNF123 NM_022064 exon18 c.1557+1G>A . AATGGGGTGAGTG . 168.0 63.0 176.0 0.0 . 584 RNF17 56163 ucsc.edu;bcgsc.ca 37 13 25439064 25439064 + Silent SNP A A G novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . RNF17 NM_031277 exon29 c.A4029G p.G1343G TGATGGAATGTCA . 45.0 4.0 50.0 0.0 . 228 SELE 6401 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 169696929 169696929 + Silent SNP A A G novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . SELE NM_000450 exon9 c.T1419C p.L473L GCACTCAAGTTGA . 312.0 96.0 261.0 0.0 . 95 SH2D4A 63898 ucsc.edu;bcgsc.ca 37 8 19218714 19218714 + Missense_Mutation SNP A A G novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . SH2D4A NM_022071 exon6 c.A595G p.K199E AAACAGAAGAAAG . 28.0 4.0 50.0 0.0 . 90 SKP2 6502 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 36152875 36152875 + Missense_Mutation SNP A A G novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . SKP2 NM_032637 exon2 c.A11G p.K4R GCAGGAAGCACCT . 43.0 4.0 67.0 0.0 . 1084 SLC25A24 29957 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 108735196 108735196 + Missense_Mutation SNP C C A rs150343087 byfrequency;alternate_allele TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . SLC25A24 NM_213651 exon1 c.G48T p.K16N CCCATCCTTGTTA . 108.0 54.0 107.0 0.0 C|0.996;T|0.004 91 SLC2A4RG 56731 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 62373481 62373481 + Splice_Site SNP A A G novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . SLC2A4RG NM_020062 exon5 c.580-2A>G . TGCTGCAGAGCCC . 88.0 26.0 124.0 0.0 . 90 SLC6A17 388662 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 110740935 110740935 + Missense_Mutation SNP C C T rs141622274 byfrequency TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . SLC6A17 NM_001010898 exon12 c.C2053T p.P685S GAGGCACCTTCCC . 120.0 50.0 127.0 0.0 C|1.000;T|0.000 92 SRRM2 23524 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 2814972 2814972 + Silent SNP T T C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . SRRM2 NM_016333 exon11 c.T4443C p.D1481D ATGTGATTCTTCC . 25.0 8.0 43.0 1.0 . 93 SSMEM1 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 129847775 129847775 + Missense_Mutation SNP T T G novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . . NM_145268 exon1 c.T25G p.W9G TTATTTTGGGAGG . 164.0 62.0 198.0 0.0 . . STAU2 27067 broad.mit.edu;bcgsc.ca 37 8 74600947 74600947 + Silent SNP T T C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . STAU2 NM_001164380 exon5 c.A216G p.E72E CGTAGATTCAGTC . 153.0 51.0 216.0 1.0 . 90 TAF2 6873 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 120807828 120807828 + Missense_Mutation SNP C C T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . TAF2 NM_003184 exon9 c.G1135A p.G379R AAAGTCCATAGAT . 111.0 48.0 162.0 1.0 . 274 TCHH 7062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 152083976 152083976 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . TCHH NM_007113 exon3 c.G1717T p.E573X GCCTCTCCTCCTG . 347.0 72.0 242.0 0.0 . 72 TFAP2D 83741 ucsc.edu;bcgsc.ca 37 6 50681772 50681772 + Missense_Mutation SNP T T C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . TFAP2D NM_172238 exon1 c.T4C p.S2P AACATGTCAACTA . 47.0 4.0 38.0 0.0 . 159 TGFA 7039 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 70742002 70742002 + Missense_Mutation SNP G G C novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . TGFA NM_001099691 exon2 c.C83G p.S28C AGCGGGGACGTGC . 84.0 24.0 96.0 0.0 . 683 TLX3 30012 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 170736448 170736448 + Missense_Mutation SNP C C A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . TLX3 NM_021025 exon1 c.C79A p.P27T AACAGCCCGGACC . 28.0 10.0 23.0 0.0 . 658 TNNT2 7139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 201328352 201328352 + Missense_Mutation SNP C C T rs147940106 TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . TNNT2 NM_001276345 exon17 c.G883A p.G295R AGCGCCCGGTGAC . 188.0 50.0 142.0 0.0 C|1.000;T|0.000 90 TRPM4 54795 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 49703678 49703678 + Missense_Mutation SNP G G A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . TRPM4 NM_017636 exon18 c.G2767A p.V923M GTCATCGTGAGCA . 68.0 34.0 75.0 0.0 . 91 TSC1 7248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 9 135782757 135782757 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . TSC1 NM_000368 exon13 c.G1264T p.E422X TCTCTTCCTGAAA . 93.0 60.0 169.0 0.0 . 1906 UBR2 23304 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 42585071 42585071 + Missense_Mutation SNP A A G novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . UBR2 NM_015255 exon11 c.A1276G p.T426A GCACCTACTCTGG . 147.0 62.0 157.0 0.0 . 94 UNC5A 90249 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 176305056 176305056 + Silent SNP G G A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . UNC5A NM_133369 exon11 c.G1797A p.A599A GTTTGCGCCGGTG . 87.0 47.0 94.0 0.0 . 91 UTS2R 2837 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 80332626 80332626 + Silent SNP C C A novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . UTS2R NM_018949 exon1 c.C426A p.T142T GCTGACCGTCATG . 56.0 24.0 71.0 0.0 . 153 ZBTB7B 51043 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 154987976 154987976 + Silent SNP G G A rs199671742 TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . ZBTB7B NM_001252406 exon4 c.G942A p.E314E AGAAGAGGAGCTG . 171.0 43.0 140.0 0.0 G|0.999;A|0.001 90 ZNF20 7568 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 12243520 12243520 + Missense_Mutation SNP C C T novel TCGA-DD-A1EK-01A-11D-A20W-10 TCGA-DD-A1EK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf72fbdc-f5e1-4545-976f-36570cea82ee 5c357792-6f7d-4e11-9e4c-7fbbedc56de1 . ZNF20 NM_021143 exon4 c.G1481A p.R494Q TGATATCGAATGT . 70.0 25.0 102.0 0.0 . 22