Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCB6	10058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220079777	220079777	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ABCB6	NM_005689	exon6	c.G1182T	p.T394T	GGCCAGCGTGGGG	.	102.0	22.0	110.0	0.0	.	153
ACTL8	81569	ucsc.edu;bcgsc.ca	37	1	18152622	18152622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ACTL8	NM_030812	exon3	c.A709G	p.T237A	AGCAACACCTATC	.	33.0	4.0	29.0	0.0	.	72
ADAM28	10863	hgsc.bcm.edu;bcgsc.ca	37	8	24193031	24193031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ADAM28	NM_014265	exon14	c.T1444C	p.S482P	GGTAAATCTGGTA	.	120.0	8.0	230.0	0.0	.	228
ADIPOR1	51094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202917500	202917500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ADIPOR1	NM_015999	exon3	c.G190T	p.V64L	CCCGCACCTCCTC	.	143.0	79.0	112.0	0.0	.	90
AGBL3	340351	hgsc.bcm.edu;bcgsc.ca	37	7	134717660	134717660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_178563	exon6	c.G484A	p.V162M	CAGCCTGTGGATT	.	82.0	44.0	195.0	0.0	.	.
AGBL3	340351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	134717658	134717659	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_178563	exon6	c.482_483insT	p.P161fs	AGCAGCCTGTGGA	.	82.0	42.0	193.0	0.0	.	.
AKAP13	11214	ucsc.edu;bcgsc.ca	37	15	86124813	86124813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	AKAP13	NM_007200	exon7	c.G3514T	p.G1172C	ACCATGGGTGACG	.	34.0	4.0	55.0	0.0	.	258
ALDH8A1	64577	broad.mit.edu;bcgsc.ca	37	6	135265028	135265028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ALDH8A1	NM_022568	exon2	c.T215C	p.V72A	TTCAGGACCCGTG	.	54.0	5.0	47.0	1.0	.	94
AMER1	139285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	63410708	63410708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_152424	exon2	c.G2459T	p.G820V	CACTTGCCTTCCC	.	62.0	58.0	56.0	0.0	.	.
AP3B2	8120	ucsc.edu;bcgsc.ca	37	15	83346874	83346874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	AP3B2	NM_004644	exon11	c.G1228A	p.V410I	GTAGGACAGTAGG	.	28.0	4.0	55.0	0.0	.	94
ARHGEF6	9459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135757211	135757211	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ARHGEF6	NM_004840	exon19	c.G1990C	p.E664Q	AGGCTTCGATCAC	.	118.0	100.0	126.0	1.0	.	227
ARPP21	10777	ucsc.edu;bcgsc.ca	37	3	35729300	35729300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ARPP21	NM_001267619	exon5	c.T331C	p.S111P	GATGACTCTGAAA	.	33.0	4.0	299.0	0.0	.	93
ASAH2	56624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	52005051	52005051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ASAH2	NM_001143974	exon2	c.G291T	p.Q97H	GAAGTTCTGAAAT	.	339.0	178.0	361.0	0.0	.	90
ATP5J2-PTCD1	100526740	ucsc.edu;bcgsc.ca	37	7	99022590	99022590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_001198879	exon7	c.T1712C	p.F571S	TTAAAGAATGTCA	.	45.0	5.0	63.0	0.0	.	.
ATP5SL	55101	ucsc.edu;bcgsc.ca	37	19	41939217	41939217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ATP5SL	NM_001167867	exon5	c.C574A	p.R192S	AGATGCGGGGGCA	.	42.0	4.0	52.0	0.0	.	135
ATP6V0A1	535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40652840	40652840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ATP6V0A1	NM_001130020	exon16	c.G1816T	p.A606S	TATGATGCTCATA	.	717.0	273.0	772.0	0.0	.	91
AUP1	550	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	74755115	74755115	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	AUP1	NM_181575	exon7	c.690delT	p.H230fs	TTGGCGATGAACA	.	128.0	27.0	155.0	0.0	.	90
AVPR1A	552	ucsc.edu;bcgsc.ca	37	12	63544149	63544149	+	Silent	SNP	C	C	T	rs138241660	byfrequency	TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	AVPR1A	NM_000706	exon1	c.G468A	p.P156P	CTTGAGCGGGTGG	.	39.0	4.0	63.0	0.0	C|1.000;T|0.000	946
AZI1	22994	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79172746	79172746	+	Silent	SNP	G	G	A	rs112371137	byfrequency	TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	AZI1	NM_014984	exon11	c.C1218T	p.P406P	GTCTCCGGGGCCT	.	58.0	20.0	59.0	1.0	G|0.989;A|0.011	136
BOD1L1	259282	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	13617012	13617012	+	Silent	SNP	C	C	A	rs56295497	byfrequency;alternate_allele	TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_148894	exon3	c.G483T	p.T161T	ATTTAGCGTGGCC	.	166.0	73.0	342.0	1.0	C|0.988;T|0.012	.
BPIFB4	149954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31672752	31672752	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_182519	exon4	c.C732T	p.G244G	GCCCGGCGTGGGT	.	51.0	18.0	60.0	0.0	.	.
C11orf65	160140	broad.mit.edu;bcgsc.ca	37	11	108253793	108253793	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	C11orf65	NM_152587	exon9	c.A897G	p.E299E	ATTTGGTTCTTGA	.	232.0	12.0	260.0	1.0	.	91
C12orf4	57102	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4609389	4609389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	C12orf4	NM_020374	exon11	c.G1355T	p.G452V	CGGAGTCCCATAA	.	137.0	48.0	210.0	1.0	.	226
C20orf111	51526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42826208	42826208	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	C20orf111	NM_016470	exon4	c.G363T	p.L121L	AATTCCCAGCCCA	.	102.0	38.0	108.0	0.0	.	90
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	29294437	29294437	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	C2orf71	NM_001029883	exon1	c.C2691T	p.T897T	GCTGGCGGTGCTC	.	47.0	12.0	40.0	0.0	.	91
CACNA1B	774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140953173	140953173	+	Silent	SNP	G	G	C	rs199714779	alternate_allele	TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	CACNA1B	NM_001243812	exon29	c.G4461C	p.V1487V	TGTGGTGCTGATG	.	107.0	38.0	96.0	0.0	.	138
CCDC43	124808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42756228	42756228	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_144609	exon5	c.G671C	p.R224P	GGTTATCGCTTTC	.	400.0	157.0	465.0	0.0	.	.
CD3EAP	10849	ucsc.edu;bcgsc.ca	37	19	45911586	45911586	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	CD3EAP	NM_012099	exon3	c.T360C	p.G120G	TGAGGGTCCCCAG	.	56.0	6.0	48.0	0.0	.	156
CEACAM18	729767	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51984902	51984902	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	CEACAM18	NM_001080405	exon4	c.T839G	p.I280S	AACGCATCTCTCT	.	99.0	32.0	91.0	0.0	.	23
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	61981117	61981117	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	CHRNA4	NM_000744	exon5	c.G1646C	p.R549P	GTGCTGCGGGTCT	.	30.0	15.0	43.0	0.0	.	91
CLASRP	11129	ucsc.edu;bcgsc.ca	37	19	45555364	45555364	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	CLASRP	NM_007056	exon3	c.C135T	p.G45G	ACATGGCCGAGCT	.	33.0	4.0	46.0	0.0	.	154
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140281020	140281020	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	CLSTN2	NM_022131	exon13	c.A2082T	p.L694F	TAACTTAGATTTC	.	95.0	40.0	90.0	0.0	.	157
COL11A2	1302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33144991	33144991	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	COL11A2	NM_080680	exon24	c.G1983T	p.G661G	CTGGGGCCCGGGA	.	63.0	16.0	65.0	0.0	.	95
COL18A1	80781	ucsc.edu;bcgsc.ca	37	21	46888235	46888235	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	COL18A1	NM_030582	exon2	c.C726A	p.P242P	TGACCCCGACGTC	.	38.0	4.0	73.0	0.0	.	90
COL6A3	1293	broad.mit.edu;bcgsc.ca	37	2	238280490	238280490	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	COL6A3	NM_004369	exon9	c.G4170A	p.S1390S	GCTCACCGAGAAC	.	81.0	7.0	97.0	0.0	.	526
COLGALT2	23127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	183938536	183938536	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_015101	exon5	c.C699A	p.P233P	GACCATGGGGACG	.	145.0	85.0	156.0	0.0	.	.
COLGALT2	23127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	183938539	183938539	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_015101	exon5	c.C696A	p.V232V	CATGGGGACGGGG	.	148.0	86.0	157.0	0.0	.	.
COPA	1314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160305090	160305090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	COPA	NM_001098398	exon4	c.G251T	p.R84L	AGACAGCGCCGAA	.	439.0	131.0	349.0	0.0	.	92
CSH1	1442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	61972411	61972411	+	Missense_Mutation	SNP	G	G	T	rs61764004		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	CSH1	NM_001317	exon5	c.C625A	p.R209S	CAGAGCGGCACTG	.	185.0	85.0	270.0	0.0	G|0.993;T|0.007	92
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266110	41266110	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	CTNNB1,NS,carcinoma,0	CTNNB1	NM_001098209	exon3	c.A107C	p.H36P	GAATCCATTCTGG	.	134.0	54.0	251.0	0.0	.	24361
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	11082847	11082847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	CTNND2	NM_001332	exon16	c.C2749T	p.R917W	TGTTCCGCAGCGC	.	115.0	44.0	172.0	0.0	.	293
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6643329	6643329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DCHS1	NM_003737	exon21	c.G9578T	p.C3193F	GGGGGACATGGCC	.	86.0	30.0	112.0	0.0	.	73
DEFB134	613211	ucsc.edu;bcgsc.ca	37	8	11851595	11851595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DEFB134	NM_001033019	exon2	c.G95T	p.C32F	TTATAGCATTTCT	.	47.0	4.0	99.0	0.0	.	90
DENND4B	9909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153913916	153913916	+	Silent	SNP	C	C	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DENND4B	NM_014856	exon7	c.G1056C	p.A352A	GATGTGCCTGGGG	.	88.0	45.0	73.0	0.0	.	69
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	51791589	51791589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DMXL2	NM_001174116	exon18	c.G3832C	p.V1278L	ATTTGACAGCATG	.	86.0	51.0	140.0	0.0	.	99
DNAH10	196385	broad.mit.edu;bcgsc.ca	37	12	124395185	124395185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DNAH10	NM_207437	exon58	c.A9746G	p.D3249G	ACTGTGATGTTTT	.	96.0	8.0	88.0	0.0	.	95
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124305198	124305198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DNAH10	NM_207437	exon23	c.G3718T	p.A1240S	GCTAACGCTGAGA	.	133.0	66.0	155.0	0.0	.	95
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	38747836	38747836	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DNAH8	NM_001206927	exon15	c.A2134T	p.K712X	GCTACTAAGAAGG	.	97.0	29.0	115.0	0.0	.	615
DNAH9	1770	ucsc.edu;bcgsc.ca	37	17	11535903	11535903	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DNAH9	NM_001372	exon8	c.1519-1G>T	.	TCTTCAGGACTTT	.	42.0	4.0	85.0	0.0	.	168
DNAJC8	22826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28536505	28536505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DNAJC8	NM_014280	exon5	c.G377T	p.G126V	TCTTTTCCTGCCT	.	104.0	52.0	145.0	0.0	.	90
DOCK3	1795	bcgsc.ca;mdanderson.org	37	3	51398052	51398052	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DOCK3	NM_004947	exon47	c.C4995T	p.T1665T	GATGACCCACCGG	.	35.0	16.0	46.0	1.0	.	22
DOCK6	57572	ucsc.edu;bcgsc.ca	37	19	11363499	11363499	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	DOCK6	NM_020812	exon3	c.C268A	p.R90R	ATTCCCGGGGCTG	.	50.0	4.0	114.0	0.0	.	93
ESRRA	2101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64082291	64082291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ESRRA	NM_004451	exon5	c.G650T	p.G217V	CCGCAGGCCCTGA	.	60.0	31.0	59.0	0.0	.	90
FAM213B	127281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2520399	2520399	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_001195736	exon6	c.C643G	p.P215A	AAGTCCCCAGGCG	.	88.0	41.0	108.0	0.0	.	.
FBN3	84467	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8186181	8186181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	FBN3	NM_032447	exon24	c.G3172T	p.G1058C	CGTAGCCGGGAAA	.	75.0	42.0	137.0	0.0	.	100
FBXW4	6468	broad.mit.edu;bcgsc.ca	37	10	103371084	103371084	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	FBXW4	NM_022039	exon9	c.T1203C	p.S401S	GTTGTAAGACAGG	.	117.0	7.0	155.0	0.0	.	226
FLOT2	2319	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27210165	27210165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	FLOT2	NM_004475	exon4	c.G307A	p.V103I	GCAGGACGACGTT	.	54.0	28.0	50.0	1.0	.	522
FPGT-TNNI3K	100526835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	74957805	74957805	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_001112808	exon25	c.A2509T	p.S837C	AGTAACAGCAGTG	.	92.0	16.0	284.0	0.0	.	.
GALT	2592	ucsc.edu;bcgsc.ca	37	9	34649406	34649406	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	GALT	NM_000155	exon10	c.905-1G>T	.	CTGTCAGGGGCTC	.	42.0	4.0	62.0	0.0	.	90
GAPDHS	26330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36033250	36033250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	GAPDHS	NM_014364	exon5	c.C479A	p.A160D	GGAGGGCTGTCGG	.	64.0	29.0	76.0	0.0	.	226
GLTSCR2	29997	ucsc.edu;bcgsc.ca	37	19	48255773	48255773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	GLTSCR2	NM_015710	exon6	c.C674T	p.P225L	AGCGGCCAGCACG	.	36.0	4.0	36.0	0.0	.	514
GPR158	57512	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25883311	25883311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	GPR158	NM_020752	exon9	c.G1983T	p.L661F	TGGGTTGCTTTTG	.	79.0	17.0	141.0	2.0	.	141
GPR180	160897	broad.mit.edu;bcgsc.ca	37	13	95257737	95257737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	GPR180	NM_180989	exon2	c.C238A	p.L80I	GAATGGCTAAAGC	.	298.0	14.0	208.0	0.0	.	153
GRIN2B	2904	ucsc.edu;bcgsc.ca	37	12	13906561	13906561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	GRIN2B	NM_000834	exon3	c.A700G	p.K234E	CTTCCTTGGTACA	.	43.0	4.0	80.0	0.0	.	231
GRIN3A	116443	ucsc.edu;bcgsc.ca	37	9	104433345	104433345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	GRIN3A	NM_133445	exon3	c.G1349T	p.R450I	TTTACTCTGATGG	.	43.0	4.0	185.0	0.0	.	96
GSG2	83903	ucsc.edu;bcgsc.ca	37	17	3627867	3627867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	GSG2	NM_031965	exon1	c.A638G	p.D213G	CCCTGGACCGAGC	.	53.0	6.0	104.0	0.0	.	297
HEXIM2	124790	ucsc.edu;bcgsc.ca	37	17	43240204	43240204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	HEXIM2	NM_144608	exon3	c.C44A	p.P15Q	AGTCACCAGTGGC	.	36.0	4.0	34.0	0.0	.	90
HPN	3249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35556780	35556780	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	HPN	NM_182983	exon12	c.C1059T	p.S353S	CGACAGCGGTGGT	.	111.0	53.0	105.0	0.0	.	515
IDH2	3418	ucsc.edu;bcgsc.ca	37	15	90628327	90628327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	IDH2	NM_002168	exon9	c.C1084T	p.R362W	TGGGCCGGCCCTG	.	28.0	4.0	58.0	0.0	.	15118
IFIT3	3437	ucsc.edu;bcgsc.ca	37	10	91099876	91099876	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	IFIT3	NM_001549	exon2	c.A1464G	p.Q488Q	AGAGCAACTGAAC	.	37.0	4.0	74.0	0.0	.	90
IFNA2	3440	ucsc.edu;bcgsc.ca	37	9	21385252	21385252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	IFNA2	NM_000605	exon1	c.T77C	p.L26P	TGAGGCAGATCAC	.	42.0	4.0	159.0	0.0	.	153
IL17RA	23765	ucsc.edu;bcgsc.ca	37	22	17585699	17585699	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	IL17RA	NM_014339	exon9	c.A930G	p.P310P	CACTCCAGGTAGG	.	38.0	4.0	40.0	1.0	.	92
IL21R	50615	broad.mit.edu;bcgsc.ca	37	16	27454318	27454318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	IL21R	NM_181079	exon6	c.T454C	p.F152L	GTGACCTTCTCAG	.	129.0	8.0	178.0	1.0	.	660
IQUB	154865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123143008	123143008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	IQUB	NM_178827	exon5	c.G857A	p.R286K	GTATCCCTACAAA	.	77.0	48.0	176.0	1.0	.	156
IRGQ	126298	ucsc.edu;bcgsc.ca	37	19	44099395	44099395	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	IRGQ	NM_001007561	exon2	c.G96A	p.V32V	CGTCTCCACATCC	.	45.0	4.0	42.0	0.0	.	92
ITGA2	3673	ucsc.edu;bcgsc.ca	37	5	52353865	52353865	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ITGA2	NM_002203	exon10	c.A1107G	p.Q369Q	TGTTCAAGGAGGA	.	31.0	4.0	145.0	0.0	.	226
KATNAL2	83473	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44625671	44625671	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KATNAL2	NM_031303	exon13	c.C1053A	p.P351P	TCTCCCCAGCCGG	.	99.0	12.0	124.0	0.0	.	93
KCNIP2	30819	ucsc.edu;bcgsc.ca	37	10	103588929	103588929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KCNIP2	NM_014591	exon4	c.C296A	p.S99Y	ACGGTGGACAATT	.	32.0	4.0	43.0	0.0	.	90
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44177219	44177219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KCTD8	NM_198353	exon2	c.A1010G	p.K337R	TCATGTTTCCTAT	.	106.0	40.0	149.0	0.0	.	92
KDM2B	84678	ucsc.edu;bcgsc.ca	37	12	121947800	121947800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KDM2B	NM_032590	exon11	c.C1217A	p.S406Y	AGCCAGGAATCCG	.	39.0	4.0	67.0	0.0	.	638
KDM5B	10765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202702803	202702803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KDM5B	NM_006618	exon23	c.G3635T	p.G1212V	CGCAGGCCCTGTG	.	72.0	28.0	79.0	0.0	.	273
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10602767	10602767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KEAP1	NM_012289	exon3	c.G811T	p.V271L	AGCGCACGGCCCG	.	45.0	35.0	68.0	0.0	.	637
KIAA0947	23379	broad.mit.edu;bcgsc.ca	37	5	5466617	5466617	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KIAA0947	NM_015325	exon14	c.6061+2T>C	.	AGAAGGTATGCTT	.	129.0	7.0	95.0	1.0	.	48
KIF13A	63971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	17764367	17764367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KIF13A	NM_022113	exon39	c.G5392T	p.A1798S	AAAAGGCTGCCTC	.	134.0	55.0	149.0	0.0	.	137
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200946358	200946358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KIF21B	NM_001252102	exon31	c.G4307T	p.R1436L	CAGATGCGGACGG	.	63.0	23.0	53.0	0.0	.	96
KLHL31	401265	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	53517092	53517092	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KLHL31	NM_001003760	exon3	c.C1209A	p.A403A	CATGCTGGCCAGG	.	84.0	37.0	69.0	1.0	.	23
KRTAP10-1	386677	ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45959880	45959880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	KRTAP10-1	NM_198691	exon1	c.C154A	p.R52S	ACACACGGCTCAC	.	46.0	28.0	56.0	0.0	.	91
KRTAP3-3	85293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	39150290	39150290	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_033185	exon1	c.C60A	p.C20X	AGAGGAGCAGATG	.	248.0	90.0	350.0	0.0	.	.
LAMA4	3910	ucsc.edu;bcgsc.ca	37	6	112457355	112457355	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	LAMA4	NM_001105206	exon25	c.A3384G	p.K1128K	TTGAGCTTTCTTT	.	36.0	4.0	65.0	0.0	.	140
LGALS7B	653499	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39281329	39281329	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_001042507	exon3	c.G96C	p.R32S	TTCCAGGTTCCAT	.	174.0	15.0	205.0	0.0	.	.
LRFN4	78999	ucsc.edu;bcgsc.ca	37	11	66625840	66625840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	LRFN4	NM_024036	exon1	c.G625A	p.A209T	ACGCTGGCTCCGG	.	61.0	6.0	33.0	0.0	.	90
LRG1	116844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4538450	4538450	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	LRG1	NM_052972	exon2	c.G546T	p.G182G	CAGCAGCCCGGGG	.	24.0	16.0	40.0	0.0	.	91
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	113658968	113658968	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	LRIG2	NM_014813	exon16	c.G2590T	p.E864X	CTGTCTGAGCCAC	.	162.0	66.0	192.0	0.0	.	229
LRMP	4033	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25254117	25254117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	LRMP	NM_001204126	exon14	c.C747A	p.S249R	GGAAAGCCGGGTT	.	50.0	10.0	85.0	0.0	.	228
MACF1	23499	broad.mit.edu;bcgsc.ca	37	1	39788629	39788629	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MACF1	NM_012090	exon34	c.T4200C	p.T1400T	AACAACTCAGCAC	.	123.0	9.0	228.0	0.0	.	165
MAGEB18	286514	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	26157602	26157602	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MAGEB18	NM_173699	exon2	c.T500A	p.V167E	AGGAAGTGGATCC	.	90.0	81.0	85.0	2.0	.	130
MAGI1	9223	ucsc.edu;bcgsc.ca	37	3	65438959	65438959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MAGI1	NM_001033057	exon6	c.A1016G	p.K339R	AGTGGCTTCTGCT	.	42.0	4.0	62.0	0.0	.	661
MAGI3	260425	broad.mit.edu;bcgsc.ca	37	1	114137184	114137184	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MAGI3	NM_001142782	exon6	c.1018+2T>C	.	TGGAGGTAGAGAT	.	222.0	11.0	263.0	1.0	.	524
MEGF6	1953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3428670	3428670	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MEGF6	NM_001409	exon8	c.G876T	p.G292G	GGCCAGCCCTGCG	.	177.0	65.0	174.0	0.0	.	90
MERTK	10461	broad.mit.edu;bcgsc.ca	37	2	112686781	112686781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MERTK	NM_006343	exon2	c.C146A	p.P49Q	ACACACCGCTGTT	.	140.0	7.0	162.0	0.0	.	1463
MMP19	4327	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56235006	56235006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MMP19	NM_001272101	exon3	c.C188A	p.A63E	TCAGATGCTTCCT	.	25.0	8.0	30.0	0.0	.	227
MPP4	58538	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	202557682	202557682	+	Silent	SNP	C	C	T	rs201304506		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MPP4	NM_033066	exon3	c.G150A	p.V50V	GAGACACACTCCA	.	43.0	8.0	113.0	0.0	C|0.999;T|0.000	22
MYADML2	255275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79899539	79899539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MYADML2	NM_001145113	exon3	c.G79A	p.V27M	GCAGCACGCGGGC	.	51.0	23.0	46.0	0.0	.	68
MYH7	4625	ucsc.edu;bcgsc.ca	37	14	23894544	23894544	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MYH7	NM_000257	exon21	c.C2370A	p.A790A	GGACTGGGCCTGG	.	45.0	5.0	105.0	0.0	.	94
MYOD1	4654	broad.mit.edu;mdanderson.org	37	11	17741511	17741511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	MYOD1	NM_002478	exon1	c.A182G	p.E61G	CCGAAGAGCACTC	.	26.0	11.0	29.0	0.0	.	154
NAGS	162417	ucsc.edu;bcgsc.ca	37	17	42084822	42084822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	NAGS	NM_153006	exon5	c.T1228C	p.S410P	CTGGCCTCGCTGC	.	38.0	5.0	32.0	0.0	.	90
NPHS1	4868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36340537	36340537	+	Silent	SNP	T	T	A	rs111277506	alternate_allele	TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	NPHS1	NM_004646	exon6	c.A627T	p.S209S	ATTATCTGAGCTC	.	59.0	17.0	72.0	0.0	T|0.500;C|0.500	49
NT5DC1	221294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116542390	116542390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	NT5DC1	NM_152729	exon7	c.G703A	p.G235R	ATTCTTGGGTGAG	.	188.0	63.0	370.0	0.0	.	226
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228474710	228474710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	OBSCN	NM_001271223	exon40	c.G10801T	p.A3601S	GGGGGCGCCTGCA	.	62.0	48.0	71.0	0.0	.	403
OR2G2	81470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247751752	247751752	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	OR2G2	NM_001001915	exon1	c.T91G	p.F31V	GTTCTATTTGTGC	.	474.0	141.0	632.0	0.0	.	68
PACSIN3	29763	ucsc.edu;bcgsc.ca	37	11	47200816	47200816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PACSIN3	NM_016223	exon8	c.A794G	p.H265R	TCACGGTGGAGTT	.	47.0	4.0	62.0	0.0	.	68
PCDH17	27253	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	58240890	58240890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PCDH17	NM_001040429	exon3	c.G2720A	p.G907D	ACAAAGGCTCCTG	.	65.0	25.0	167.0	1.0	.	97
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140798829	140798829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PCDHGB7	NM_018927	exon1	c.G1403A	p.G468D	AGCCGGGTGCCTC	.	129.0	29.0	147.0	0.0	.	29
PCGF2	7703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36891702	36891702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PCGF2	NM_007144	exon11	c.C809T	p.P270L	GTGGCTGGCAGGG	.	111.0	52.0	148.0	0.0	.	658
PCYT2	5833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79864760	79864760	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PCYT2	NM_001184917	exon8	c.G606T	p.R202R	GGGGTTCCGCCCA	.	69.0	31.0	53.0	0.0	.	68
PER3	8863	ucsc.edu;bcgsc.ca	37	1	7887221	7887221	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PER3	NM_016831	exon17	c.A2208G	p.K736K	CAGGAAAGGGAAG	.	37.0	4.0	54.0	0.0	.	93
PHACTR4	65979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28800595	28800595	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PHACTR4	NM_023923	exon6	c.C1383G	p.S461R	TGACAGCTTTTCT	.	134.0	59.0	149.0	0.0	.	90
PHF8	23133	ucsc.edu;bcgsc.ca	37	X	54022184	54022184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PHF8	NM_001184896	exon12	c.A1373G	p.E458G	ACTGTCTCCGGGA	.	40.0	5.0	43.0	0.0	.	133
PLEC	5339	ucsc.edu;bcgsc.ca	37	8	144994696	144994696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PLEC	NM_201380	exon32	c.C9704A	p.A3235D	TTCTCGGCTGATA	.	38.0	4.0	32.0	0.0	.	141
PLEKHO2	80301	ucsc.edu;bcgsc.ca	37	15	65157960	65157960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PLEKHO2	NM_025201	exon6	c.A1346G	p.E449G	CTGTGGAGCAGCT	.	40.0	4.0	74.0	0.0	.	92
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129279234	129279234	+	Missense_Mutation	SNP	C	C	T	rs201100072	alternate_allele	TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PLXND1	NM_015103	exon31	c.G5072A	p.R1691Q	CTCTGCCGGTGAG	.	152.0	62.0	158.0	0.0	C|0.999;G|0.000	90
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81746949	81746949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PPFIA2	NM_001220476	exon16	c.C1943A	p.T648K	GCTAGCGTCTGGG	.	116.0	52.0	198.0	0.0	.	231
PRPF40A	55660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	153573934	153573934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PRPF40A	NM_017892	exon1	c.G20T	p.R7L	CGCCGGCGGCCAC	.	84.0	30.0	87.0	0.0	.	68
PRR19	284338	ucsc.edu;bcgsc.ca	37	19	42814120	42814120	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	PRR19	NM_199285	exon2	c.T384C	p.P128P	GGTGCCTGGAGGT	.	35.0	4.0	46.0	1.0	.	68
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	109380318	109380318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	RANBP2	NM_006267	exon20	c.G3323T	p.G1108V	TGTCTGGAATTTC	.	118.0	45.0	214.0	0.0	.	675
REEP5	7905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112238112	112238112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	REEP5	NM_005669	exon3	c.T316C	p.F106L	ACAGGAAGATATC	.	128.0	60.0	142.0	0.0	.	280
RNASEH2C	84153	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	65488115	65488115	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	RNASEH2C	NM_032193	exon1	c.G115C	p.D39H	GCCCGTCCACCGC	.	19.0	9.0	24.0	0.0	.	90
ROBO1	6091	ucsc.edu;bcgsc.ca	37	3	79639053	79639053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ROBO1	NM_002941	exon2	c.G9T	p.W3C	ATGTTTCCATTTC	.	44.0	4.0	162.0	0.0	.	67
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77651546	77651546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ROBO2	NM_002942	exon20	c.G3040A	p.D1014N	GCTGTCGATCTGC	.	282.0	115.0	238.0	0.0	.	328
RPS4Y1	6192	broad.mit.edu;bcgsc.ca	37	Y	2722744	2722744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	RPS4Y1	NM_001008	exon5	c.A464G	p.K155R	TCATCAAGGTGAA	.	49.0	6.0	376.0	0.0	.	424
RUNDC1	146923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41143400	41143400	+	Silent	SNP	T	T	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	RUNDC1	NM_173079	exon5	c.T1509A	p.P503P	CCTTCCTGTTACG	.	106.0	36.0	122.0	0.0	.	90
SASH3	54440	ucsc.edu;bcgsc.ca	37	X	128926328	128926328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SASH3	NM_018990	exon5	c.C467A	p.P156Q	CCAGCCCAGGTTC	.	42.0	4.0	41.0	0.0	.	133
SEMA3D	223117	ucsc.edu;bcgsc.ca	37	7	84671523	84671523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SEMA3D	NM_152754	exon8	c.G940A	p.G314R	CACTTCCAGGAAT	.	41.0	5.0	173.0	0.0	.	138
SEPP1	6414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	42804757	42804757	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SEPP1	NM_005410	exon5	c.534+1G>T	.	AAAATACCGTGAG	.	314.0	106.0	304.0	1.0	.	68
SHMT2	6472	ucsc.edu;bcgsc.ca	37	12	57626600	57626600	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SHMT2	NM_005412	exon7	c.T831C	p.T277T	CACCACTACTCAC	.	42.0	4.0	53.0	0.0	.	91
SIGLEC7	27036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51645632	51645632	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SIGLEC7	NM_016543	exon1	c.G6A	p.L2L	TATGCTGCTGCTG	.	31.0	14.0	43.0	0.0	.	153
SLC12A1	6557	ucsc.edu;bcgsc.ca	37	15	48593511	48593511	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SLC12A1	NM_001184832	exon26	c.3097-1G>T	.	CCCACAGAGTTAC	.	58.0	5.0	80.0	0.0	.	24
SLC17A4	10050	ucsc.edu;bcgsc.ca	37	6	25762253	25762253	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SLC17A4	NM_005495	exon2	c.C63T	p.N21N	TTTAAACGTGGCT	.	49.0	4.0	53.0	0.0	.	91
SLC2A13	114134	ucsc.edu;bcgsc.ca	37	12	40158661	40158661	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SLC2A13	NM_052885	exon9	c.1446-1G>T	.	TCACACCTGAAAA	.	32.0	4.0	126.0	0.0	.	515
SLC37A1	54020	ucsc.edu;bcgsc.ca	37	21	43954849	43954849	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SLC37A1	NM_018964	exon5	c.C180T	p.D60D	AGCTGACGTCAGG	.	47.0	4.0	74.0	0.0	.	90
SMC2	10592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	106894408	106894408	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SMC2	NM_001042551	exon22	c.3108+2T>G	.	AAAAGGTACTTTT	.	287.0	123.0	503.0	0.0	.	210
SNRPA1	6627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101827889	101827889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SNRPA1	NM_003090	exon4	c.G328T	p.A110S	GAGATGCCAGAGG	.	99.0	66.0	196.0	1.0	.	226
SNX7	51375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	99203828	99203828	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SNX7	NM_015976	exon8	c.G1161C	p.V387V	TAAAGTGGAATGT	.	84.0	32.0	114.0	0.0	.	229
SP6	80320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45925714	45925714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SP6	NM_001258248	exon2	c.C82A	p.P28T	GGAGAGGCTGCAG	.	52.0	21.0	42.0	0.0	.	91
SPATA31D1	389763	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	84609195	84609195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_001001670	exon4	c.G3810T	p.Q1270H	GAAGCAGGAGCCC	.	64.0	22.0	106.0	1.0	.	.
SPTBN5	51332	ucsc.edu;bcgsc.ca	37	15	42152870	42152870	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SPTBN5	NM_016642	exon47	c.T7797C	p.A2599A	CTCCAGAGCACTG	.	40.0	4.0	67.0	0.0	.	91
ST3GAL2	6483	ucsc.edu;bcgsc.ca	37	16	70432284	70432284	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ST3GAL2	NM_006927	exon2	c.G150A	p.L50L	GGGCACCAGCTTC	.	39.0	4.0	43.0	0.0	.	91
STOML1	9399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74277722	74277722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	STOML1	NM_001256672	exon5	c.G727T	p.A243S	GCAGGGCCAGCTG	.	38.0	10.0	94.0	0.0	.	91
SYCN	342898	ucsc.edu;bcgsc.ca	37	19	39694627	39694627	+	Missense_Mutation	SNP	C	C	T	rs201454210		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SYCN	NM_001080468	exon1	c.G268A	p.V90M	ACCACACGGTGAG	.	46.0	4.0	52.0	0.0	.	68
SYF2	25949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	25558651	25558651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	SYF2	NM_015484	exon2	c.G76T	p.A26S	GAGCGGCCAGCTC	.	90.0	41.0	80.0	0.0	.	90
TAF4	6874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60578221	60578221	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TAF4	NM_003185	exon9	c.G2481T	p.S827S	CCGAAACGAACCT	.	103.0	46.0	105.0	0.0	.	93
TENC1	23371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53446269	53446269	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TENC1	NM_015319	exon3	c.A245T	p.E82V	AATGTGAAGCAAA	.	111.0	43.0	100.0	0.0	.	92
TET1	80312	broad.mit.edu;bcgsc.ca	37	10	70332547	70332547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TET1	NM_030625	exon2	c.A452G	p.K151R	GAGTAAAGCACTC	.	83.0	6.0	108.0	0.0	.	663
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105924415	105924415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TGFBRAP1	NM_004257	exon2	c.G344T	p.R115L	TTGATGCGGGCCC	.	45.0	23.0	48.0	0.0	.	91
TNS1	7145	ucsc.edu;bcgsc.ca	37	2	218745712	218745712	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TNS1	NM_022648	exon16	c.G963T	p.P321P	CACGCTCGGCCCG	.	42.0	5.0	57.0	0.0	.	156
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578449	7578449	+	Missense_Mutation	SNP	C	C	A	rs193920817	alternate_allele	TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	TP53,NS,carcinoma,0	TP53	NM_000546	exon5	c.G481T	p.A161S	AGATGGCCATGGC	.	56.0	36.0	98.0	0.0	.	70225
TRAK2	66008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202251196	202251196	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TRAK2	NM_015049	exon14	c.C1708T	p.L570L	GATACAGAGTTTG	.	54.0	19.0	121.0	0.0	.	90
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230667054	230667054	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TRIP12	NM_004238	exon20	c.C2895T	p.A965A	AGCTGTGGCTGTC	.	73.0	18.0	111.0	0.0	.	572
TTC23	64927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99759189	99759189	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TTC23	NM_001040657	exon5	c.G369T	p.V123V	GGGAGGCACAATG	.	166.0	98.0	382.0	0.0	.	90
TTN	7273	ucsc.edu;bcgsc.ca	37	2	179583632	179583632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	TTN	NM_001267550	exon84	c.A24295G	p.S8099G	TGACACTGGTGAA	.	27.0	4.0	54.0	0.0	.	636
UBTF	7343	ucsc.edu;bcgsc.ca	37	17	42287773	42287773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	UBTF	NM_014233	exon14	c.G1428T	p.E476D	CCGTTCCTCGCGC	.	48.0	4.0	69.0	0.0	.	90
UNC93A	54346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167708073	167708073	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	UNC93A	NM_018974	exon2	c.G156A	p.L52L	GCTCCTGTCCTCC	.	115.0	43.0	101.0	0.0	.	90
USF1	7391	ucsc.edu;bcgsc.ca	37	1	161011115	161011115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	USF1	NM_001276373	exon7	c.C559A	p.P187T	CTCACGGGGAATA	.	69.0	6.0	92.0	0.0	.	516
VWCE	220001	broad.mit.edu;bcgsc.ca	37	11	61040788	61040788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	VWCE	NM_152718	exon13	c.A1582G	p.N528D	CCCCATTCTGGAA	.	126.0	7.0	170.0	0.0	.	91
XIRP2	129446	broad.mit.edu;bcgsc.ca	37	2	168105731	168105731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	XIRP2	NM_152381	exon9	c.C7829T	p.P2610L	TTCAACCCAGCCC	.	87.0	4.0	169.0	1.0	.	104
ZBTB18	10472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	244218434	244218434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_205768	exon2	c.G1358T	p.G453V	AGTGCGGCAAGAG	.	105.0	86.0	83.0	0.0	.	.
ZNF234	10780	ucsc.edu;bcgsc.ca	37	19	44661487	44661487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	NM_006630	exon6	c.A1318G	p.S440G	CGTCAGAGTTCAT	.	41.0	4.0	73.0	0.0	.	.
ZNF423	23090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	49671299	49671299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ZNF423	NM_015069	exon4	c.C1764A	p.H588Q	GTTCTTGTGGTTC	.	447.0	160.0	517.0	0.0	.	228
ZNF512B	57473	ucsc.edu;bcgsc.ca	37	20	62592677	62592677	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ZNF512B	NM_020713	exon16	c.G2412T	p.L804L	GGTCTTCAGGATG	.	33.0	4.0	46.0	0.0	.	90
ZNF521	25925	ucsc.edu;bcgsc.ca	37	18	22775197	22775197	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	ZNF521	NM_015461	exon5	c.T3585C	p.Y1195Y	GCATTGATAGGTC	.	33.0	4.0	121.0	0.0	.	275
OR5D14	219436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55563794	55563795	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DD-A1EL-01A-11D-A152-10	TCGA-DD-A1EL-10A-01D-A152-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d252f328-4583-4e97-9a71-bb2885f06f73	b43d641d-f1b1-474e-9475-a1f2e81835b8	.	.	.	.	.	p.G255L	TTCCATGGGACCA	.	123.0	53.0	289.0	0.0	.	.