Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCB7	22	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	74295254	74295254	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ABCB7	NM_004299	exon6	c.T801C	p.A267A	TACCAAAGCACTC	.	137.0	6.0	157.0	0.0	.	131
ACOT13	55856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24698153	24698153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ACOT13	NM_018473	exon2	c.A124G	p.M42V	TGTGAAATGAAAG	.	90.0	34.0	103.0	0.0	.	90
AEBP1	165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44150363	44150363	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AEBP1	NM_001129	exon12	c.T1440A	p.N480K	CAGCAATGACAGC	.	92.0	27.0	119.0	0.0	.	90
AHNAK2	113146	hgsc.bcm.edu;bcgsc.ca	37	14	105407781	105407781	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AHNAK2	NM_138420	exon7	c.A14007G	p.E4669E	AACAGATTCCACA	.	74.0	4.0	124.0	0.0	.	47
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74283258	74283259	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ALB	NM_000477	exon11	c.1300_1301del	p.434_434del	TTAGTTCGTTACA	.	97.0	15.0	105.0	0.0	.	96
ALKBH8	91801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	107403057	107403057	+	Missense_Mutation	SNP	T	T	C	rs202093339	alternate_allele	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ALKBH8	NM_138775	exon8	c.A847G	p.T283A	CTCCTGTCATCAC	.	174.0	7.0	188.0	0.0	T|0.999;A|0.000	68
ALX3	257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110607343	110607343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ALX3	NM_006492	exon2	c.C460A	p.R154S	TACGACGCTTCTT	.	220.0	118.0	344.0	0.0	.	90
ANKMY2	57037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	16640522	16640522	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANKMY2	NM_020319	exon10	c.A1190T	p.E397V	TCAGCCTCTGGTT	.	65.0	21.0	63.0	0.0	.	514
ANKRD12	23253	hgsc.bcm.edu;bcgsc.ca	37	18	9254527	9254527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANKRD12	NM_015208	exon9	c.T1262C	p.V421A	CTAGGGTCTTATA	.	76.0	4.0	80.0	0.0	.	92
ANO3	63982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	26664762	26664762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANO3	NM_031418	exon23	c.C2309T	p.A770V	TTGTTGCGGCTTT	.	137.0	41.0	171.0	0.0	.	93
ARHGAP10	79658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	148778702	148778702	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ARHGAP10	NM_024605	exon5	c.385-2A>G	.	ATTTGTAGGAAGA	.	38.0	17.0	43.0	0.0	.	229
ATAD1	84896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	89550120	89550120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ATAD1	NM_032810	exon4	c.C329T	p.P110L	TTGATAGGTAAGA	.	79.0	25.0	80.0	0.0	.	578
ATG4D	84971	hgsc.bcm.edu;bcgsc.ca	37	19	10659671	10659671	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ATG4D	NM_032885	exon6	c.T927C	p.G309G	ACTGGGTGGCGAG	.	117.0	5.0	138.0	0.0	.	90
ATN1	1822	hgsc.bcm.edu;bcgsc.ca	37	12	7050122	7050122	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ATN1	NM_001007026	exon8	c.T3294C	p.T1098T	TGGAACTCTCCCT	.	65.0	5.0	103.0	0.0	.	139
AVL9	23080	hgsc.bcm.edu;bcgsc.ca	37	7	32590989	32590989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AVL9	NM_015060	exon5	c.A416G	p.H139R	TTACACATGCATA	.	68.0	4.0	85.0	0.0	.	90
BHLHB9	80823	hgsc.bcm.edu;bcgsc.ca	37	X	102004756	102004756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	BHLHB9	NM_001142530	exon2	c.T833C	p.I278T	AGCCTATCCCTGA	.	87.0	4.0	122.0	0.0	.	132
C5	727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	123738976	123738976	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C5	NM_001735	exon30	c.3864+2T>C	.	AATGTTACCTGGG	.	80.0	4.0	95.0	0.0	.	92
C9orf72	203228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27548315	27548315	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C9orf72	NM_018325	exon11	c.T1365G	p.I455M	TGGTTTAATTTTC	.	61.0	15.0	64.0	0.0	.	517
CBS	875	hgsc.bcm.edu;bcgsc.ca	37	21	44480560	44480560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CBS	NM_000071	exon12	c.G1136A	p.R379Q	TAGTTCCGCACTG	.	54.0	4.0	58.0	0.0	.	90
CCDC132	55610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92952972	92952972	+	Silent	SNP	T	T	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CCDC132	NM_017667	exon21	c.T1905A	p.V635V	TGATGTTATTCAT	.	39.0	9.0	59.0	0.0	.	90
CCER1	196477	hgsc.bcm.edu;broad.mit.edu	37	12	91348442	91348442	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_152638	exon1	c.G78A	p.W26X	GTGTGCCCAGCCA	.	54.0	10.0	86.0	0.0	.	.
CCNH	902	hgsc.bcm.edu;bcgsc.ca	37	5	86703825	86703825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CCNH	NM_001239	exon4	c.A493G	p.R165G	ATGGTCTGTAAGG	.	82.0	4.0	96.0	0.0	.	441
CD1E	913	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158325665	158325665	+	Missense_Mutation	SNP	G	G	A	rs202212296		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CD1E	NM_001042584	exon4	c.G674A	p.R225H	CTGGCCGTCTGCA	.	503.0	38.0	284.0	0.0	G|0.999;A|0.000	93
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	61687550	61687550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CDH8	NM_001796	exon12	c.G2362A	p.E788K	AGAGTTCGCCCAG	.	138.0	30.0	179.0	0.0	.	161
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37455988	37455988	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CEBPZ	NM_005760	exon2	c.A348G	p.K116K	TACTTCTTTTTTG	.	41.0	5.0	36.0	0.0	.	91
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109793709	109793709	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CELSR2	NM_001408	exon1	c.C1008T	p.P336P	CAGCCCCTCTGAA	.	56.0	25.0	65.0	0.0	.	526
CEP152	22995	hgsc.bcm.edu;bcgsc.ca	37	15	49083508	49083508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CEP152	NM_014985	exon8	c.A898G	p.R300G	TCTCTCTTTCTTT	.	72.0	4.0	101.0	0.0	.	70
CERS5	91012	hgsc.bcm.edu;broad.mit.edu	37	12	50529757	50529757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_147190	exon7	c.G732A	p.M244I	TAGACACATGATC	.	77.0	4.0	107.0	0.0	.	.
CNNM2	54805	hgsc.bcm.edu;bcgsc.ca	37	10	104679481	104679481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CNNM2	NM_199076	exon1	c.T1244C	p.L415P	AACTGCTGGAGAT	.	61.0	4.0	38.0	0.0	.	515
CNTNAP4	85445	hgsc.bcm.edu;bcgsc.ca	37	16	76523688	76523688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CNTNAP4	NM_138994	exon12	c.T1769C	p.M590T	CCAGCATGGAGCA	.	109.0	5.0	145.0	0.0	.	70
COL4A3BP	10087	hgsc.bcm.edu;bcgsc.ca	37	5	74685511	74685511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	COL4A3BP	NM_001130105	exon13	c.T1574C	p.V525A	TCTTCAACCTTGA	.	77.0	4.0	93.0	0.0	.	226
CUL9	23113	hgsc.bcm.edu;bcgsc.ca	37	6	43153709	43153709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CUL9	NM_015089	exon4	c.T767C	p.L256P	AGCTGCTTTTCTC	.	111.0	6.0	96.0	0.0	.	529
CUZD1	50624	hgsc.bcm.edu;bcgsc.ca	37	10	124595749	124595749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CUZD1	NM_022034	exon6	c.T935C	p.L312S	TTTGATAATTTTG	.	94.0	4.0	129.0	0.0	.	92
CWC27	10283	hgsc.bcm.edu;bcgsc.ca	37	5	64079686	64079686	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CWC27	NM_005869	exon4	c.T276C	p.R92R	GTTGCGTTTTAAT	.	91.0	4.0	62.0	0.0	.	90
CYP2C18	1562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	96447910	96447910	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CYP2C18	NM_000772	exon3	c.G360A	p.W120X	GAGATGGAAGGAG	.	187.0	57.0	240.0	0.0	.	95
DAAM1	23002	hgsc.bcm.edu;bcgsc.ca	37	14	59793328	59793328	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DAAM1	NM_001270520	exon11	c.A1275G	p.T425T	CTCCACACCTTTG	.	145.0	6.0	210.0	0.0	.	227
DCTN5	84516	hgsc.bcm.edu;bcgsc.ca	37	16	23654296	23654296	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DCTN5	NM_001199011	exon2	c.T69C	p.S23S	AGTCAGTCGCCAG	.	64.0	4.0	73.0	0.0	.	226
DEFB126	81623	hgsc.bcm.edu;bcgsc.ca	37	20	126206	126206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DEFB126	NM_030931	exon2	c.T209C	p.V70A	ATCCTGTTTTCTG	.	134.0	6.0	109.0	0.0	.	90
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24749890	24749890	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DFNA5	NM_001127453	exon6	c.C815G	p.A272G	CCATGCGCAGCAT	.	67.0	13.0	59.0	0.0	.	91
DHX29	54505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54570765	54570765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DHX29	NM_019030	exon15	c.A2501G	p.Q834R	GCATGCTGAGTGC	.	79.0	16.0	109.0	0.0	.	229
DLD	1738	hgsc.bcm.edu;bcgsc.ca	37	7	107533711	107533711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DLD	NM_000108	exon2	c.G106A	p.A36T	ACTTACGCAGATC	.	65.0	4.0	78.0	0.0	.	226
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11757692	11757692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DNAH9	NM_001372	exon50	c.G9880A	p.A3294T	GCCACCGCGGACC	.	115.0	44.0	113.0	0.0	.	168
EPG5	57724	hgsc.bcm.edu;bcgsc.ca	37	18	43496028	43496028	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EPG5	NM_020964	exon19	c.T3528C	p.A1176A	CTGAAAAGCTGCT	.	55.0	4.0	82.0	0.0	.	580
ERCC6	2074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	50690818	50690818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ERCC6	NM_000124	exon10	c.G2084T	p.C695F	AACTTTCCCGGGA	.	77.0	6.0	95.0	0.0	.	1153
EZR	7430	hgsc.bcm.edu;bcgsc.ca	37	6	159190397	159190397	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EZR	NM_003379	exon11	c.G1305A	p.R435R	GCGCCTCCGCGCC	.	34.0	4.0	45.0	0.0	.	70
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	126238284	126238284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FAT4	NM_024582	exon1	c.G718T	p.V240L	GTGACTGTGCAAG	.	98.0	8.0	138.0	0.0	.	108
FBXO3	26273	hgsc.bcm.edu;bcgsc.ca	37	11	33790501	33790501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FBXO3	NM_012175	exon3	c.A254G	p.D85G	CCTACATCAGAGT	.	64.0	4.0	110.0	0.0	.	227
FCGBP	8857	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	40368846	40368846	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FCGBP	NM_003890	exon28	c.T12502G	p.S4168A	CCACGGAGACAGG	.	120.0	11.0	139.0	0.0	.	98
FERMT1	55612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	6057869	6057869	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FERMT1	NM_017671	exon15	c.A1985T	p.E662V	AGTGTTTCATTCT	.	137.0	23.0	167.0	0.0	.	495
FLG2	388698	broad.mit.edu;bcgsc.ca	37	1	152327807	152327807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FLG2	NM_001014342	exon3	c.G2455A	p.G819S	CAAAGCCAGCGGA	.	319.0	15.0	120.0	1.0	.	151
FTCD	10841	hgsc.bcm.edu;broad.mit.edu	37	21	47575400	47575401	+	In_Frame_Ins	INS	-	-	CCATAA	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FTCD	NM_206965	exon1	c.38_39insTTATGG	p.E13delinsVME	TTCCCCTCCGAAA	.	82.0	11.0	100.0	0.0	.	92
GAL	51083	hgsc.bcm.edu;bcgsc.ca	37	11	68453108	68453108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GAL	NM_015973	exon3	c.T128C	p.L43P	ACCTGCTGGGCCC	.	60.0	4.0	65.0	0.0	.	90
GLCE	26035	hgsc.bcm.edu;bcgsc.ca	37	15	69553621	69553621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GLCE	NM_015554	exon4	c.T782C	p.V261A	CGAATGTGGCTGA	.	90.0	4.0	125.0	0.0	.	92
GNB1	2782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	1720616	1720617	+	Nonsense_Mutation	INS	-	-	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GNB1	NM_002074	exon10	c.792_793insA	p.Y264_S265delinsX	ATGGGAGTAAGTC	.	151.0	61.0	196.0	0.0	.	227
GPR179	440435	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36499312	36499312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GPR179	NM_001004334	exon1	c.T361C	p.S121P	CACTGGACTCACG	.	136.0	15.0	170.0	1.0	.	93
GPSM1	26086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	139244074	139244074	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GPSM1	NM_001145638	exon11	c.G1314A	p.W438X	GGACTGGCGGGGG	.	86.0	30.0	115.0	0.0	.	90
GRIN2C	2905	bcgsc.ca;mdanderson.org	37	17	72848172	72848172	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GRIN2C	NM_000835	exon3	c.T978C	p.P326P	CCGGGCAGGGCTG	.	17.0	3.0	37.0	0.0	.	228
GRSF1	2926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	71691022	71691022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_002092	exon8	c.T1384C	p.S462P	CGTGGGACCGATC	.	81.0	5.0	154.0	0.0	.	.
GTF3C3	9330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197634689	197634689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GTF3C3	NM_012086	exon16	c.C2335T	p.H779Y	CCATATGAATAAA	.	90.0	17.0	99.0	0.0	.	97
HCFC1	3054	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	153220034	153220034	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HCFC1	NM_005334	exon17	c.G3816A	p.V1272V	GGCTGTCACAGTC	.	104.0	40.0	165.0	1.0	.	132
HHIPL2	79802	hgsc.bcm.edu;bcgsc.ca	37	1	222712068	222712068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HHIPL2	NM_024746	exon5	c.T1499C	p.V500A	CCAGTGACTGACT	.	117.0	5.0	150.0	0.0	.	69
HMGN5	79366	hgsc.bcm.edu;bcgsc.ca	37	X	80371833	80371833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HMGN5	NM_030763	exon6	c.A137G	p.K46R	TTTGTCTTCATTT	.	81.0	4.0	102.0	0.0	.	130
HNRNPC	3183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21699222	21699222	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HNRNPC	NM_001077443	exon3	c.T251G	p.L84R	GCAGCCAGGTTAA	.	60.0	14.0	64.0	0.0	.	90
HS3ST6	64711	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1961778	1961778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001009606	exon2	c.A749G	p.N250S	GTGGCGTTGAAGT	.	116.0	27.0	172.0	1.0	.	.
HSPA5	3309	hgsc.bcm.edu;bcgsc.ca	37	9	128000515	128000515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HSPA5	NM_005347	exon7	c.T1307C	p.L436P	GGAATCAGTTTGG	.	69.0	4.0	77.0	0.0	.	230
IFNA7	3444	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21201807	21201807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	IFNA7	NM_021057	exon1	c.G358A	p.E120K	ATGCTTCCAGGTC	.	370.0	107.0	477.0	0.0	.	90
ITGA7	3679	hgsc.bcm.edu;bcgsc.ca	37	12	56091488	56091488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ITGA7	NM_001144996	exon9	c.T1412C	p.V471A	AAGAGCACTGCGG	.	52.0	4.0	86.0	0.0	.	229
KCNMA1	3778	hgsc.bcm.edu;bcgsc.ca	37	10	78832856	78832856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KCNMA1	NM_002247	exon14	c.A1748G	p.K583R	GTTACCTTTATGA	.	99.0	5.0	124.0	0.0	.	93
KCNT2	343450	hgsc.bcm.edu;bcgsc.ca	37	1	196295981	196295981	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KCNT2	NM_198503	exon19	c.T2142C	p.Y714Y	GAATCCATAGGCT	.	78.0	4.0	89.0	0.0	.	159
KCTD17	79734	hgsc.bcm.edu;bcgsc.ca	37	22	37453518	37453518	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KCTD17	NM_024681	exon4	c.C492T	p.G164G	TGATGGCTGGCGC	.	46.0	4.0	75.0	0.0	.	68
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34818735	34818735	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA0355	NM_014686	exon5	c.C906T	p.F302F	CGGCTTCCACCTG	.	88.0	13.0	99.0	0.0	.	91
KIAA0825	285600	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	93807341	93807341	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA0825	NM_001145678	exon9	c.G1551T	p.V517V	GGCCTCCACCAAG	.	173.0	13.0	150.0	0.0	.	91
KIAA1731	85459	hgsc.bcm.edu;bcgsc.ca	37	11	93455128	93455128	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA1731	NM_033395	exon20	c.A5859G	p.T1953T	TAAAACACTGTCT	.	66.0	4.0	103.0	0.0	.	22
KIAA2026	158358	hgsc.bcm.edu;bcgsc.ca	37	9	5920644	5920644	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA2026	NM_001017969	exon8	c.T5352C	p.T1784T	GAGTGAAGTCCGA	.	89.0	5.0	140.0	0.0	.	92
KLHL28	54813	hgsc.bcm.edu;bcgsc.ca	37	14	45414969	45414969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KLHL28	NM_017658	exon2	c.A163G	p.S55G	TGACGCTGGCAAG	.	85.0	5.0	115.0	0.0	.	91
KRT2	3849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	53039093	53039093	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KRT2	NM_000423	exon9	c.C1630T	p.R544X	ACTGTCGGCCTCC	.	67.0	13.0	74.0	0.0	.	92
KRTAP5-1	387264	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1606421	1606421	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KRTAP5-1	NM_001005922	exon1	c.G59C	p.G20A	CCACAGCCGGAGC	.	147.0	62.0	190.0	0.0	.	44
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88459081	88459081	+	Missense_Mutation	SNP	C	C	T	rs121908335		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LDB3	NM_001171611	exon8	c.C1147T	p.R383C	AAATTGCGCAACT	.	104.0	19.0	72.0	0.0	.	92
LDOC1	23641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	140270987	140270987	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LDOC1	NM_012317	exon1	c.220delT	p.Y74fs	GCATGTAAGACGC	.	75.0	28.0	97.0	0.0	.	130
LILRB5	10990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54759311	54759311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LILRB5	NM_001081442	exon5	c.G790A	p.V264I	CCTGGACGAGGTC	.	228.0	28.0	217.0	0.0	.	92
LRBA	987	hgsc.bcm.edu;bcgsc.ca	37	4	151727552	151727552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LRBA	NM_006726	exon33	c.A5389G	p.T1797A	TCTCTGTAATACT	.	70.0	4.0	97.0	0.0	.	157
MAP3K4	4216	hgsc.bcm.edu;bcgsc.ca	37	6	161455479	161455479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MAP3K4	NM_006724	exon2	c.A341G	p.K114R	ATTTGAAAGGTGA	.	67.0	4.0	104.0	0.0	.	548
MDN1	23195	hgsc.bcm.edu;bcgsc.ca	37	6	90461216	90461216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MDN1	NM_014611	exon23	c.A3161G	p.E1054G	TACGTCTCATCTA	.	109.0	5.0	164.0	0.0	.	100
MED16	10025	hgsc.bcm.edu;bcgsc.ca	37	19	873468	873468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MED16	NM_005481	exon11	c.T1886C	p.L629P	CTGGCCAGCAGGT	.	88.0	5.0	66.0	0.0	.	186
METAP1	23173	hgsc.bcm.edu;bcgsc.ca	37	4	99960538	99960538	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_015143	exon5	c.T354C	p.S118S	TGAATCTGAACAG	.	75.0	4.0	72.0	0.0	.	.
MGAT5	4249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135170467	135170467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MGAT5	NM_002410	exon12	c.G1558A	p.E520K	CCTTACGAGGGCC	.	231.0	28.0	250.0	0.0	.	93
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60766239	60766239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MRC2	NM_006039	exon23	c.C3252A	p.S1084R	GCACAGCCCCTCA	.	124.0	42.0	127.0	0.0	.	117
MRPS31	10240	hgsc.bcm.edu;bcgsc.ca	37	13	41323319	41323319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MRPS31	NM_005830	exon6	c.A913G	p.T305A	CTTTTGTCCACTG	.	67.0	4.0	146.0	0.0	.	226
MTMR11	10903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149901687	149901687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MTMR11	NM_001145862	exon16	c.G1769A	p.R590H	AGCCAACGAGAAG	.	130.0	20.0	83.0	0.0	.	90
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	3090725	3090725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MYOM1	NM_003803	exon27	c.G3940A	p.G1314R	ACGTTCCCTCATC	.	165.0	30.0	216.0	0.0	.	94
NAAA	27163	hgsc.bcm.edu;bcgsc.ca	37	4	76861242	76861242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NAAA	NM_014435	exon2	c.T283C	p.F95L	CGGTGAAGGGCTG	.	105.0	5.0	132.0	0.0	.	91
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20066708	20066708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NAV2	NM_001244963	exon15	c.C3463G	p.L1155V	GCCGGCCTGGCCA	.	54.0	12.0	78.0	0.0	.	96
NCOA3	8202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	46271003	46271003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NCOA3	NM_181659	exon17	c.A3127G	p.N1043D	CCTTCCAACCTGG	.	40.0	4.0	72.0	0.0	.	229
NDST4	64579	hgsc.bcm.edu;bcgsc.ca	37	4	115856381	115856381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NDST4	NM_022569	exon6	c.T1517C	p.L506P	ATTGTGAGAAAAA	.	82.0	4.0	140.0	0.0	.	94
NFASC	23114	hgsc.bcm.edu;bcgsc.ca	37	1	204978736	204978736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NFASC	NM_001005388	exon28	c.T3341C	p.L1114P	TTGGGCTTATGTG	.	60.0	5.0	67.0	0.0	.	139
NFAT5	10725	hgsc.bcm.edu;bcgsc.ca	37	16	69718852	69718852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NFAT5	NM_138713	exon11	c.T1753C	p.S585P	CCTTGCTCTTTTG	.	103.0	5.0	103.0	0.0	.	90
NKIRAS1	28512	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	23942422	23942422	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NKIRAS1	NM_020345	exon4	c.G213T	p.L71L	CTTTGGCAGCTCC	.	156.0	19.0	133.0	1.0	.	659
NKIRAS1	28512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	23942421	23942421	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NKIRAS1	NM_020345	exon4	c.C214G	p.P72A	GCTTTGGCAGCTC	.	155.0	19.0	130.0	0.0	.	659
NVL	4931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	224475603	224475603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NVL	NM_002533	exon14	c.C1668A	p.F556L	AACAATGAAATCA	.	108.0	26.0	163.0	0.0	.	92
OGFRL1	79627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72003034	72003034	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OGFRL1	NM_024576	exon2	c.A273G	p.R91R	AAAGAGAAGTTTT	.	143.0	22.0	127.0	0.0	.	68
OR1L6	392390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125512279	125512279	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OR1L6	NM_001004453	exon1	c.C153T	p.Y51Y	CATCTACTCTGAC	.	228.0	45.0	311.0	0.0	.	68
OR5A1	219982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	59211305	59211305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OR5A1	NM_001004728	exon1	c.G664T	p.G222C	TCCTATGGTTACA	.	135.0	24.0	201.0	0.0	.	69
OSR1	130497	hgsc.bcm.edu;bcgsc.ca	37	2	19552914	19552914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OSR1	NM_145260	exon2	c.T653C	p.L218P	TCTCGCAGGTGGT	.	59.0	4.0	78.0	0.0	.	257
PCDHGA1	56114	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140712536	140712536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCDHGA1	NM_018912	exon1	c.A2285G	p.D762G	CTGCGGACTCGCG	.	262.0	53.0	275.0	2.0	.	137
PCDHGB3	56102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140750845	140750845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_018924	exon1	c.A884G	p.D295G	AGCTGGACAGTAA	.	98.0	32.0	85.0	0.0	.	.
PDE4A	5141	hgsc.bcm.edu;bcgsc.ca	37	19	10572599	10572599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PDE4A	NM_001111307	exon13	c.T1667C	p.L556P	CTGACCTGAAGAC	.	30.0	4.0	50.0	0.0	.	523
PGLYRP4	57115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153317700	153317700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PGLYRP4	NM_020393	exon4	c.C298T	p.R100W	GTTCCCGCAGTCT	.	107.0	10.0	65.0	0.0	.	94
POLR3A	11128	hgsc.bcm.edu;bcgsc.ca	37	10	79752965	79752965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	POLR3A	NM_007055	exon20	c.A2777G	p.D926G	ATGTTGTCCAGAA	.	57.0	4.0	76.0	0.0	.	90
RAB14	51552	hgsc.bcm.edu;bcgsc.ca	37	9	123952841	123952841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RAB14	NM_016322	exon4	c.A275G	p.D92G	GTGATATCATAGA	.	70.0	4.0	72.0	0.0	.	227
RABEP1	9135	hgsc.bcm.edu;bcgsc.ca	37	17	5235279	5235279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RABEP1	NM_004703	exon3	c.G199A	p.A67T	CAAGCTGCACAAG	.	41.0	4.0	38.0	0.0	.	659
RASA1	5921	hgsc.bcm.edu;bcgsc.ca	37	5	86659274	86659274	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RASA1	NM_002890	exon11	c.T1563C	p.D521D	AATAGATCTCAGT	.	69.0	4.0	83.0	0.0	.	661
RIMKLA	284716	hgsc.bcm.edu;bcgsc.ca	37	1	42865162	42865162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RIMKLA	NM_173642	exon2	c.A251G	p.D84G	ACAGTGACATCAC	.	123.0	5.0	113.0	0.0	.	90
RNF213	57674	hgsc.bcm.edu;bcgsc.ca	37	17	78346832	78346832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RNF213	NM_001256071	exon49	c.T12809C	p.V4270A	TCCGGGTGGAGAA	.	95.0	6.0	135.0	0.0	.	577
SAMD4B	55095	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39868421	39868421	+	Silent	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SAMD4B	NM_018028	exon10	c.C1401G	p.A467A	CGTCGCCGACGGA	.	78.0	12.0	88.0	0.0	.	90
SBNO2	22904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1112458	1112458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_014963	exon21	c.C2458T	p.R820C	GCACGCGGCGCCG	.	49.0	15.0	104.0	0.0	.	.
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48056059	48056059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SEMA6D	NM_153617	exon10	c.C760T	p.R254C	TATTCCCGCGTGG	.	116.0	37.0	125.0	0.0	.	138
SEMA7A	8482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	74709008	74709008	+	Missense_Mutation	SNP	C	C	T	rs140707085		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SEMA7A	NM_003612	exon7	c.G709A	p.D237N	TGTCATCGTAAGC	.	248.0	19.0	315.0	0.0	C|1.000;T|0.000	153
SIM2	6493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38095410	38095410	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SIM2	NM_005069	exon5	c.C522A	p.G174G	CGCGGGCCTGACC	.	58.0	14.0	80.0	0.0	.	90
SIRPB2	284759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1460431	1460431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SIRPB2	NM_001122962	exon2	c.C365T	p.T122I	GTTCCAGTGTGCT	.	217.0	61.0	233.0	0.0	.	226
SKIDA1	387640	hgsc.bcm.edu;mdanderson.org	37	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_207371	exon4	c.G1266A	p.E422E	TTCCTCCTCCTCC	.	50.0	9.0	46.0	0.0	.	.
SLC16A4	9122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110919677	110919678	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC16A4	NM_004696	exon7	c.1137_1138insAG	p.T379fs	CAGGTTAGTGATG	.	98.0	32.0	145.0	0.0	.	93
SLC16A4	9122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110919678	110919679	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC16A4	NM_004696	exon7	c.1136_1137insT	p.T379fs	AGGTTAGTGATGC	.	98.0	32.0	147.0	0.0	.	93
SLC17A2	10246	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	25917214	25917214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC17A2	NM_005835	exon7	c.T751C	p.S251P	GTGAGGACAGGAT	.	91.0	26.0	88.0	1.0	.	91
SLC25A30	253512	hgsc.bcm.edu;bcgsc.ca	37	13	45978525	45978525	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC25A30	NM_001010875	exon5	c.G330A	p.V110V	ACATATCACATTT	.	42.0	4.0	85.0	0.0	.	135
SLC2A4RG	56731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	62373927	62373927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC2A4RG	NM_020062	exon6	c.G919A	p.V307I	AGCACCGTTGCTA	.	39.0	6.0	40.0	0.0	.	90
SMCR8	140775	hgsc.bcm.edu;bcgsc.ca	37	17	18219495	18219495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SMCR8	NM_144775	exon1	c.G392A	p.G131D	AGGAGGGCGCCTT	.	61.0	4.0	42.0	0.0	.	91
SNX32	254122	hgsc.bcm.edu;bcgsc.ca	37	11	65618862	65618862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SNX32	NM_152760	exon8	c.A773G	p.N258S	AAGTCAACCAGCT	.	51.0	4.0	65.0	0.0	.	68
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220333960	220333960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SPEG	NM_005876	exon13	c.C3574T	p.R1192W	TTCCTGCGGCCAC	.	169.0	58.0	174.0	0.0	.	383
STXBP5	134957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	147680286	147680286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	STXBP5	NM_001127715	exon23	c.G2372T	p.R791L	AATCCCGAGAAGC	.	58.0	24.0	92.0	0.0	.	90
STXBP5L	9515	hgsc.bcm.edu;bcgsc.ca	37	3	120941904	120941904	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	STXBP5L	NM_014980	exon11	c.A1011G	p.R337R	TAGAAGACCAAGT	.	114.0	5.0	132.0	0.0	.	77
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	113169740	113169740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SVEP1	NM_153366	exon38	c.T8140C	p.S2714P	CAATTGAAATGCA	.	131.0	7.0	109.0	0.0	.	75
TBC1D2B	23102	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	78305187	78305187	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TBC1D2B	NM_144572	exon9	c.G2248C	p.G750R	AGTAGCCGATATC	.	232.0	16.0	234.0	0.0	.	136
TGM1	7051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24729674	24729674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TGM1	NM_000359	exon4	c.T739C	p.F247L	GGTTGAAGAGGAT	.	57.0	21.0	89.0	0.0	.	91
TNRC6B	23112	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40521858	40521858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TNRC6B	NM_001024843	exon3	c.A37G	p.S13G	GAAAGCAGTTCCA	.	74.0	17.0	90.0	1.0	.	22
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31769301	31769301	+	Silent	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TSHZ3	NM_020856	exon2	c.G1398C	p.L466L	CACATTCAGTTTT	.	177.0	34.0	191.0	0.0	.	232
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179506015	179506015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TTN	NM_001267550	exon220	c.A40586G	p.E13529G	TTAGGTTCTTCTT	.	67.0	4.0	83.0	0.0	.	636
UGT2B28	54490	broad.mit.edu;ucsc.edu	37	4	70160274	70160274	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	UGT2B28	NM_053039	exon6	c.C1337G	p.S446X	AATTATCAATAAT	.	63.0	11.0	72.0	0.0	.	91
UTRN	7402	hgsc.bcm.edu;bcgsc.ca	37	6	144801024	144801024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	UTRN	NM_007124	exon25	c.A3413G	p.Q1138R	AGATGCAGGAATG	.	50.0	5.0	55.0	0.0	.	95
WDR19	57728	hgsc.bcm.edu;bcgsc.ca	37	4	39191330	39191330	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	WDR19	NM_025132	exon4	c.T219C	p.A73A	GATTGCTGAGAAA	.	103.0	5.0	152.0	0.0	.	67
WDR26	80232	hgsc.bcm.edu;bcgsc.ca	37	1	224588733	224588733	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	WDR26	NM_025160	exon9	c.A1338G	p.E446E	ACTGTCTTCATGA	.	78.0	5.0	79.0	0.0	.	90
ZFP106	64397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42742306	42742306	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZFP106	NM_022473	exon2	c.T2095G	p.L699V	CATCCAAGCTAGC	.	106.0	26.0	104.0	0.0	.	515
ZNF232	7775	hgsc.bcm.edu;bcgsc.ca	37	17	5009622	5009622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF232	NM_014519	exon5	c.T832C	p.W278R	GGGACCACCTCAG	.	78.0	4.0	80.0	0.0	.	154
ZNF71	58491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57133319	57133319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF71	NM_021216	exon3	c.G664A	p.A222T	GGCAAGGCCTTCC	.	118.0	18.0	100.0	0.0	.	91
ZNF91	7644	hgsc.bcm.edu;bcgsc.ca	37	19	23556628	23556628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF91	NM_003430	exon3	c.T169C	p.S57P	GCTTAGAGAGAGC	.	71.0	4.0	117.0	0.0	.	90