Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AATK	9625	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	79094085	79094085	+	Silent	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AATK	NM_001080395	exon11	c.G3651C	p.L1217L	CTCGGACAGCAGG	.	175.0	39.0	105.0	0.0	.	933
ABCB6	10058	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220075719	220075719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCB6	NM_005689	exon15	c.G2080T	p.D694Y	CCTCATCATTCCC	.	149.0	41.0	115.0	0.0	.	153
ABCC9	10060	hgsc.bcm.edu;bcgsc.ca	37	12	22012588	22012588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCC9	NM_005691	exon20	c.A2437G	p.S813G	CCCCACTCAGGTT	.	63.0	4.0	78.0	0.0	.	96
ADAMTS18	170692	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77327037	77327037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADAMTS18	NM_199355	exon20	c.G3125T	p.G1042V	ACACAGCCCTCCT	.	80.0	23.0	62.0	0.0	.	1036
AKAP4	8852	hgsc.bcm.edu;bcgsc.ca	37	X	49963345	49963345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AKAP4	NM_003886	exon2	c.A86G	p.Y29C	GGGTTGTAGAGAT	.	119.0	7.0	79.0	0.0	.	540
ARFGEF1	10565	hgsc.bcm.edu;bcgsc.ca	37	8	68113709	68113709	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARFGEF1	NM_006421	exon37	c.C5260G	p.L1754V	TCAAAAGCCTCTG	.	349.0	16.0	106.0	0.0	.	294
ARFIP1	27236	hgsc.bcm.edu;bcgsc.ca	37	4	153803996	153803996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARFIP1	NM_001025595	exon7	c.A755G	p.D252G	TTGAAGATACATT	.	66.0	4.0	60.0	0.0	.	91
ARHGEF26	26084	hgsc.bcm.edu;bcgsc.ca	37	3	153839867	153839867	+	Missense_Mutation	SNP	T	T	C	rs200926651	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARHGEF26	NM_001251962	exon2	c.T86C	p.V29A	ACCAGGTTCTGGG	.	231.0	11.0	146.0	0.0	.	47
ASAP2	8853	hgsc.bcm.edu;bcgsc.ca	37	2	9515031	9515031	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ASAP2	NM_001135191	exon17	c.T1704C	p.D568D	TGCTGATGGTGTG	.	71.0	4.0	61.0	0.0	.	90
ASCC3	10973	hgsc.bcm.edu;bcgsc.ca	37	6	101312035	101312035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ASCC3	NM_006828	exon3	c.A146G	p.K49R	ATTATCTTCTTCC	.	112.0	5.0	75.0	0.0	.	96
ATXN7L1	222255	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	105283324	105283324	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATXN7L1	NM_020725	exon5	c.G823C	p.G275R	TGGTGCCATTTTG	.	480.0	125.0	309.0	0.0	.	90
ATXN7L3	56970	hgsc.bcm.edu;bcgsc.ca	37	17	42273429	42273429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATXN7L3	NM_020218	exon6	c.A517G	p.R173G	TGGATCTTCGAGG	.	77.0	4.0	95.0	0.0	.	68
BAZ2A	11176	hgsc.bcm.edu;bcgsc.ca	37	12	56997486	56997486	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BAZ2A	NM_013449	exon18	c.3045-2A>G	.	TCAGCCTTGAAAT	.	77.0	4.0	67.0	0.0	.	22
BCAR1	9564	hgsc.bcm.edu;bcgsc.ca	37	16	75269535	75269535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BCAR1	NM_001170714	exon6	c.C1400A	p.P467Q	TCTGCCGGGGCTT	.	153.0	10.0	134.0	0.0	.	1145
BRD2	6046	hgsc.bcm.edu;bcgsc.ca	37	6	32945598	32945598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BRD2	NM_005104	exon9	c.T1394C	p.V465A	TACCAGTCTCTAC	.	291.0	19.0	205.0	0.0	.	398
CACNA1B	774	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140772543	140772543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CACNA1B	NM_001243812	exon1	c.C158T	p.A53V	AGCGCGCGCGGAC	.	170.0	75.0	98.0	0.0	.	138
CCDC136	64753	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128455707	128455707	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC136	NM_022742	exon16	c.A3085C	p.K1029Q	CAGAGGAAATTAG	.	146.0	73.0	102.0	0.0	.	24
CDC42	998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	22413358	22413358	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDC42	NM_001791	exon5	c.485delA	p.Q162fs	TTACACAGGTAAG	.	99.0	51.0	48.0	0.0	.	1084
CECR1	51816	hgsc.bcm.edu;bcgsc.ca	37	22	17662863	17662863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CECR1	NM_017424	exon8	c.T1289C	p.M430T	GTGGCCATCAGAG	.	72.0	4.0	64.0	0.0	.	91
CELSR2	1952	ucsc.edu;bcgsc.ca	37	1	109813221	109813221	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CELSR2	NM_001408	exon24	c.A7482G	p.T2494T	CATCACAGGTACT	.	147.0	90.0	94.0	0.0	.	526
CENPJ	55835	hgsc.bcm.edu;bcgsc.ca	37	13	25480336	25480336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CENPJ	NM_018451	exon7	c.T1840C	p.S614P	TGGAAGACATCCG	.	87.0	6.0	103.0	0.0	.	92
CHMP5	51510	hgsc.bcm.edu;bcgsc.ca	37	9	33271180	33271180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHMP5	NM_016410	exon5	c.A346G	p.M116V	AAGGAAATGAAGA	.	82.0	6.0	64.0	0.0	.	91
CLTCL1	8218	ucsc.edu;bcgsc.ca	37	22	19189003	19189003	+	Missense_Mutation	SNP	A	A	C	rs112507727		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLTCL1	NM_001835	exon23	c.T3602G	p.V1201G	TCTCCAACTACGG	.	102.0	0.0	108.0	0.0	A|0.500;C|0.500	230
CNOT1	23019	hgsc.bcm.edu;bcgsc.ca	37	16	58562491	58562491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNOT1	NM_016284	exon44	c.A6341G	p.H2114R	CCATAATGGTAAT	.	71.0	4.0	61.0	0.0	.	95
CNTNAP2	26047	hgsc.bcm.edu;bcgsc.ca	37	7	147844667	147844667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNTNAP2	NM_014141	exon17	c.A2639G	p.D880G	ACGATGACCAGTG	.	118.0	5.0	87.0	0.0	.	100
COBL	23242	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51287588	51287588	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COBL	NM_015198	exon2	c.A95C	p.H32P	TGCACATGCAGAG	.	182.0	79.0	118.0	1.0	.	95
COG4	25839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70548316	70548316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COG4	NM_015386	exon4	c.G466A	p.E156K	CCTGCTCATAATC	.	107.0	24.0	101.0	0.0	.	90
CORIN	10699	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	47695047	47695047	+	Missense_Mutation	SNP	C	C	T	rs143738568	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CORIN	NM_006587	exon6	c.G853A	p.G285R	GTTTCCCGGGGAT	.	127.0	48.0	100.0	0.0	C|1.000;G|0.000	91
CTNND2	1501	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	11159822	11159822	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CTNND2	NM_001332	exon12	c.C2025T	p.I675I	ATCCTGGATGATT	.	329.0	66.0	185.0	0.0	.	293
CYP3A4	1576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	99364063	99364063	+	Nonsense_Mutation	SNP	G	G	A	rs138105638		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYP3A4	NM_017460	exon9	c.C802T	p.R268X	CCACTCGGTGCTA	.	188.0	26.0	159.0	0.0	G|1.000;A|0.000	517
DCUN1D1	54165	hgsc.bcm.edu;bcgsc.ca	37	3	182665124	182665124	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DCUN1D1	NM_020640	exon7	c.604-2A>G	.	TGTTCCTATTTAA	.	63.0	4.0	36.0	0.0	.	91
DCX	1641	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	110574142	110574142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DCX	NM_001195553	exon5	c.C936A	p.N312K	TTGGTCGTTACCT	.	109.0	70.0	87.0	0.0	.	554
DEPDC5	9681	hgsc.bcm.edu;bcgsc.ca	37	22	32215113	32215113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DEPDC5	NM_001242897	exon22	c.A1772G	p.Y591C	GTGGATACACGCC	.	140.0	8.0	130.0	0.0	.	519
DISP1	84976	hgsc.bcm.edu;bcgsc.ca	37	1	223177971	223177971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DISP1	NM_032890	exon10	c.C3232A	p.R1078S	CTGAGTCGCGTGG	.	239.0	22.0	131.0	0.0	.	68
DMBT1	1755	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124402895	124402895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DMBT1	NM_007329	exon53	c.G7223A	p.R2408Q	CACGCCGAGAAGA	.	165.0	46.0	117.0	0.0	.	494
DNAH6	1768	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84954804	84954804	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH6	NM_001370	exon61	c.C9984T	p.T3328T	CAATACCACCATT	.	193.0	65.0	222.0	0.0	.	69
DPRX	503834	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54140025	54140025	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DPRX	NM_001012728	exon3	c.T359A	p.V120E	GCCTGGTGTACAC	.	160.0	52.0	158.0	0.0	.	90
DSCAM	1826	hgsc.bcm.edu;bcgsc.ca	37	21	41434820	41434820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DSCAM	NM_001271534	exon28	c.A4895G	p.K1632R	AAACTCTTTGCAT	.	89.0	4.0	96.0	0.0	.	101
DUS1L	64118	hgsc.bcm.edu;bcgsc.ca	37	17	80020818	80020818	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DUS1L	NM_022156	exon5	c.T429C	p.P143P	CGTGACAGGAACA	.	56.0	4.0	47.0	0.0	.	91
DYNC2H1	79659	hgsc.bcm.edu;bcgsc.ca	37	11	102991458	102991458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DYNC2H1	NM_001377	exon8	c.T1175C	p.I392T	AGATTATTGCACC	.	72.0	4.0	38.0	0.0	.	68
ECEL1	9427	hgsc.bcm.edu;broad.mit.edu	37	2	233350834	233350834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ECEL1	NM_004826	exon2	c.A530G	p.Q177R	TTGCGCTGGGCCG	.	9.0	5.0	9.0	0.0	.	90
ELAVL3	1995	hgsc.bcm.edu;bcgsc.ca	37	19	11565448	11565448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ELAVL3	NM_001420	exon7	c.A997G	p.T333A	AGTTGGTCATGGT	.	127.0	6.0	107.0	0.0	.	92
EPHA3	2042	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	89480505	89480505	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EPHA3	NM_005233	exon13	c.C2342G	p.T781R	ATACAACAAGAGT	.	141.0	83.0	121.0	0.0	.	1500
EYS	346007	hgsc.bcm.edu;bcgsc.ca	37	6	66094287	66094287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EYS	NM_001142801	exon8	c.A1291G	p.R431G	TGAATCTTCCAAT	.	77.0	4.0	42.0	0.0	.	660
FAM160B1	57700	hgsc.bcm.edu;bcgsc.ca	37	10	116608429	116608429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM160B1	NM_020940	exon13	c.A1736G	p.D579G	CGGATGACGCAAA	.	99.0	4.0	94.0	0.0	.	91
FAM186A	121006	hgsc.bcm.edu;bcgsc.ca	37	12	50749223	50749223	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM186A	NM_001145475	exon4	c.A1392G	p.K464K	TGTGGCTTTTTTG	.	107.0	5.0	78.0	0.0	.	68
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu	37	3	10108949	10108949	+	Silent	SNP	T	T	C	rs201487858		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FANCD2	NM_001018115	exon26	c.T2442C	p.T814T	GCTCACTCGGTTA	.	116.0	6.0	61.0	0.0	T|0.998;C|0.002	229
FDXR	2232	hgsc.bcm.edu;bcgsc.ca	37	17	72860316	72860316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FDXR	NM_001258012	exon9	c.A1085G	p.D362G	CGCCCATCTGGTG	.	94.0	6.0	54.0	0.0	.	226
FREM1	158326	hgsc.bcm.edu;bcgsc.ca	37	9	14863881	14863881	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FREM1	NM_144966	exon4	c.T255C	p.L85L	GTTGGGAAGGAAA	.	100.0	4.0	112.0	0.0	.	138
GGA2	23062	hgsc.bcm.edu;bcgsc.ca	37	16	23481435	23481435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GGA2	NM_015044	exon15	c.T1502C	p.L501P	AAGTGGAGCAGAA	.	71.0	4.0	87.0	0.0	.	91
GLS	2744	hgsc.bcm.edu;bcgsc.ca	37	2	191765310	191765310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GLS	NM_014905	exon4	c.T626C	p.V209A	ACATTGTTTTGTT	.	55.0	4.0	63.0	0.0	.	92
GNA13	10672	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	63014373	63014373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GNA13	NM_006572	exon3	c.C559T	p.P187S	TTACTGGTTCTCC	.	244.0	59.0	200.0	0.0	.	227
GPR155	151556	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	175318476	175318476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPR155	NM_001033045	exon12	c.C1865T	p.S622L	TCAAACGAAGGAA	.	93.0	36.0	95.0	1.0	.	91
GPR98	84059	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89968413	89968413	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPR98	NM_032119	exon22	c.A4803G	p.G1601G	CAGAGGAGCTCTG	.	372.0	83.0	177.0	0.0	.	103
HINT3	135114	hgsc.bcm.edu;bcgsc.ca	37	6	126278232	126278232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HINT3	NM_138571	exon1	c.A109C	p.K37Q	GCTGGCAAGTCAC	.	187.0	8.0	117.0	0.0	.	90
HSF4	3299	hgsc.bcm.edu;bcgsc.ca	37	16	67203201	67203201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HSF4	NM_001040667	exon14	c.A1274G	p.E425G	TTCCAGAGCGGGG	.	72.0	4.0	59.0	0.0	.	90
IL18RAP	8807	hgsc.bcm.edu;bcgsc.ca	37	2	103067460	103067460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IL18RAP	NM_003853	exon11	c.A1363G	p.R455G	CTTGAAAGAGATG	.	77.0	4.0	59.0	0.0	.	95
IQSEC3	440073	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	271222	271222	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IQSEC3	NM_001170738	exon8	c.C2574A	p.G858G	TGTGGGCATGAAG	.	81.0	41.0	120.0	1.0	.	560
KCNC1	3746	broad.mit.edu;mdanderson.org	37	11	17757951	17757951	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCNC1	NM_004976	exon1	c.G402A	p.A134A	CGACGCGGACGCC	.	22.0	8.0	10.0	0.0	.	91
KIAA1751	85452	hgsc.bcm.edu;bcgsc.ca	37	1	1887022	1887022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA1751	NM_001080484	exon18	c.T2284C	p.S762P	CCTAGGAAAATTC	.	179.0	8.0	95.0	0.0	.	69
KIAA2026	158358	hgsc.bcm.edu;bcgsc.ca	37	9	5921058	5921058	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA2026	NM_001017969	exon8	c.A4938G	p.S1646S	TCTTGCTGAAGAA	.	72.0	5.0	51.0	0.0	.	92
KIFC2	90990	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	145693366	145693366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIFC2	NM_145754	exon7	c.C806T	p.P269L	GGGCTCCGCAGGT	.	218.0	25.0	42.0	0.0	.	92
KRAS	3845	hgsc.bcm.edu;bcgsc.ca	37	12	25368464	25368464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KRAS	NM_033360	exon5	c.A481G	p.R161G	TCTCCCTCACCAA	.	67.0	4.0	138.0	0.0	.	92875
L1CAM	3897	hgsc.bcm.edu;bcgsc.ca	37	X	153128287	153128287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	L1CAM	NM_000425	exon28	c.T3605C	p.L1202P	CTGCCCAGGGGCT	.	72.0	4.0	63.0	0.0	.	138
LMBRD1	55788	hgsc.bcm.edu;bcgsc.ca	37	6	70490443	70490443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LMBRD1	NM_018368	exon3	c.T250C	p.W84R	TAGCCCAGTCCTA	.	52.0	4.0	40.0	0.0	.	91
LPA	4018	hgsc.bcm.edu;bcgsc.ca	37	6	161022116	161022116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LPA	NM_005577	exon20	c.A2960G	p.N987S	CAGTAGTTCTTGA	.	74.0	4.0	136.0	0.0	.	74
LY75	4065	hgsc.bcm.edu;bcgsc.ca	37	2	160732083	160732083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LY75	NM_002349	exon12	c.A1846G	p.S616G	TGAAGCTTCTGCA	.	105.0	5.0	83.0	0.0	.	90
MAGEB16	139604	hgsc.bcm.edu;bcgsc.ca	37	X	35820408	35820408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAGEB16	NM_001099921	exon2	c.A95G	p.K32R	TCTCCAAGGCTCT	.	88.0	4.0	87.0	0.0	.	66
MECOM	2122	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	169099249	169099249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MECOM	NM_004991	exon2	c.G101A	p.G34E	GCTACTCCATCTG	.	153.0	51.0	92.0	0.0	.	853
MKNK2	2872	hgsc.bcm.edu;bcgsc.ca	37	19	2041918	2041918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MKNK2	NM_017572	exon11	c.T866C	p.L289P	CCGCTGAGTAGGA	.	54.0	4.0	71.0	0.0	.	978
MRPS5	64969	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	95767468	95767468	+	Missense_Mutation	SNP	C	C	A	rs199914429	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MRPS5	NM_031902	exon8	c.G764T	p.G255V	GAAAAACCTTTAA	.	110.0	23.0	91.0	0.0	C|0.999;G|0.000	92
MST1	4485	hgsc.bcm.edu;bcgsc.ca	37	3	49722913	49722913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MST1	NM_020998	exon12	c.G1414A	p.D472N	GGGGGTCCAGGAT	.	553.0	46.0	262.0	0.0	.	278
MTF1	4520	hgsc.bcm.edu;bcgsc.ca	37	1	38288327	38288327	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MTF1	NM_005955	exon9	c.A1233G	p.T411T	ATTTCCTGTGGAT	.	63.0	4.0	32.0	0.0	.	92
MUC2	4583	hgsc.bcm.edu;bcgsc.ca	37	11	1094691	1094691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MUC2	NM_002457	exon32	c.G5767T	p.G1923W	ACGACCGGGTCAT	.	164.0	7.0	101.0	0.0	.	90
MUC4	4585	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195508423	195508423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MUC4	NM_018406	exon2	c.C10028T	p.T3343I	ACAGGGGTGGTGT	.	304.0	115.0	159.0	0.0	.	90
MYO5C	55930	hgsc.bcm.edu;bcgsc.ca	37	15	52571842	52571842	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO5C	NM_018728	exon3	c.T168C	p.S56S	AGGCAGAGATTCT	.	79.0	4.0	61.0	0.0	.	145
MYO9A	4649	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	72193622	72193622	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO9A	NM_006901	exon23	c.C3060T	p.L1020L	TCTGCGGAGCACC	.	140.0	57.0	132.0	0.0	.	93
NDUFAF1	51103	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41688824	41688824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NDUFAF1	NM_016013	exon2	c.G434T	p.G145V	CTGCCTCCAATCG	.	269.0	94.0	250.0	0.0	.	91
NFX1	4799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33295418	33295418	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NFX1	NM_147134	exon2	c.G1026A	p.T342T	GGAAACGCACACA	.	33.0	14.0	27.0	0.0	.	91
NUP93	9688	hgsc.bcm.edu;bcgsc.ca	37	16	56867148	56867148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NUP93	NM_014669	exon13	c.A1367G	p.N456S	CGGTGAACCAGCA	.	150.0	6.0	127.0	0.0	.	205
OSBPL6	114880	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179226415	179226415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OSBPL6	NM_001201480	exon14	c.C1235G	p.S412C	TGCATTCTCTTTT	.	234.0	91.0	258.0	0.0	.	69
PBX4	80714	hgsc.bcm.edu;bcgsc.ca	37	19	19681414	19681414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PBX4	NM_025245	exon3	c.A422G	p.E141G	TCTAGCTCAGAGT	.	123.0	5.0	90.0	0.0	.	154
PCF11	51585	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	82877693	82877693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PCF11	NM_015885	exon5	c.T1754C	p.V585A	AGAATGTAGAAAA	.	122.0	57.0	100.0	0.0	.	23
PDCD11	22984	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105174798	105174798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDCD11	NM_014976	exon12	c.G1408A	p.V470M	ATGCTGGTGAAGG	.	151.0	48.0	110.0	0.0	.	275
PDZD7	79955	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102777929	102777929	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDZD7	NM_001195263	exon9	c.C1449T	p.D483D	GCGCCCGTCCCGC	.	138.0	39.0	104.0	0.0	.	136
PHF11	51131	hgsc.bcm.edu;bcgsc.ca	37	13	50098318	50098318	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHF11	NM_001040443	exon8	c.A735G	p.P245P	AATTCCAGAAAAA	.	88.0	4.0	145.0	0.0	.	90
PHKA1	5255	hgsc.bcm.edu;bcgsc.ca	37	X	71873287	71873287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHKA1	NM_001172436	exon11	c.A1135G	p.R379G	TCACCCTGTCAGG	.	85.0	4.0	88.0	0.0	.	134
PICK1	9463	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	38470994	38470994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PICK1	NM_012407	exon13	c.C1103T	p.T368I	ACACCACATTGGC	.	118.0	46.0	107.0	0.0	.	226
PLA2G12B	84647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	74702445	74702445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLA2G12B	NM_032562	exon2	c.G265T	p.G89C	AGGAGCCGCAGCC	.	62.0	27.0	58.0	0.0	.	91
PLCZ1	89869	hgsc.bcm.edu;bcgsc.ca	37	12	18872429	18872429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLCZ1	NM_033123	exon5	c.T505C	p.S169P	TATGTGAAGATGA	.	81.0	4.0	104.0	0.0	.	228
PNLIPRP3	119548	hgsc.bcm.edu;bcgsc.ca	37	10	118231366	118231366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PNLIPRP3	NM_001011709	exon10	c.A1147G	p.K383E	GTTAGGAAAACTG	.	118.0	6.0	132.0	0.0	.	91
POLR2A	5430	hgsc.bcm.edu;bcgsc.ca	37	17	7416095	7416095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POLR2A	NM_000937	exon28	c.A4609G	p.S1537G	ATAGGGAGTGGAA	.	48.0	4.0	57.0	0.0	.	91
PRAME	23532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22892685	22892685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRAME	NM_206954	exon5	c.A416G	p.N139S	GCCCTGTTTCCAG	.	78.0	21.0	112.0	0.0	.	515
PSAT1	29968	hgsc.bcm.edu;bcgsc.ca	37	9	80923403	80923403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PSAT1	NM_021154	exon6	c.A644G	p.D215G	GTGATGACCTGCT	.	146.0	6.0	192.0	0.0	.	91
PTPN5	84867	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18763990	18763990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTPN5	NM_032781	exon7	c.C544T	p.R182C	ACTGGCGCCTGTC	.	121.0	60.0	95.0	0.0	.	229
PUM1	9698	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	31441332	31441332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PUM1	NM_014676	exon11	c.G1514A	p.R505H	CCTCCACGGAGAA	.	182.0	22.0	87.0	0.0	.	92
PZP	5858	hgsc.bcm.edu;bcgsc.ca	37	12	9349247	9349247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PZP	NM_002864	exon9	c.A902G	p.H301R	TTGGTGTGTACTT	.	69.0	4.0	84.0	0.0	.	157
RAD23B	5887	hgsc.bcm.edu;bcgsc.ca	37	9	110091920	110091920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAD23B	NM_002874	exon10	c.A1213G	p.N405D	CAGCAGAACTTTG	.	72.0	4.0	85.0	0.0	.	228
RAI1	10743	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17700882	17700882	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAI1	NM_030665	exon3	c.C4620A	p.L1540L	GCGCCTCACTCGG	.	256.0	87.0	227.0	0.0	.	91
RAP1GDS1	5910	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	99313179	99313179	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAP1GDS1	NM_001100426	exon6	c.T588C	p.N196N	CCAAAATGCAGCT	.	77.0	31.0	126.0	0.0	.	660
RETSAT	54884	hgsc.bcm.edu;bcgsc.ca	37	2	85578072	85578072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RETSAT	NM_017750	exon3	c.A428G	p.Q143R	TCCAGCTGCCCTT	.	162.0	7.0	191.0	0.0	.	70
RIPK3	11035	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	24805506	24805506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RIPK3	NM_006871	exon10	c.G1432A	p.G478S	CCAAGCCCCATGT	.	101.0	38.0	88.0	0.0	.	946
RNASEL	6041	ucsc.edu;bcgsc.ca	37	1	182550475	182550475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RNASEL	NM_021133	exon5	c.G1790A	p.R597Q	ACATTCCGAAGCG	.	268.0	44.0	157.0	1.0	.	336
RNF121	55298	hgsc.bcm.edu;bcgsc.ca	37	11	71671841	71671841	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RNF121	NM_018320	exon3	c.T147C	p.A49A	TGAAGCTATGCAT	.	119.0	5.0	85.0	0.0	.	226
RPL11	6135	hgsc.bcm.edu;bcgsc.ca	37	1	24022333	24022333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPL11	NM_000975	exon5	c.A442G	p.T148A	CGCAGGACAGGCT	.	165.0	7.0	88.0	0.0	.	226
SALL1	6299	hgsc.bcm.edu;bcgsc.ca	37	16	51173561	51173561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SALL1	NM_002968	exon2	c.C2572T	p.L858F	TCTCGAGGGGCAA	.	183.0	8.0	155.0	0.0	.	98
SAP130	79595	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	128712861	128712861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SAP130	NM_001145928	exon16	c.G2199T	p.M733I	AGTCTCCATGGAC	.	195.0	61.0	188.0	0.0	.	94
SATB1	6304	hgsc.bcm.edu;bcgsc.ca	37	3	18427925	18427925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SATB1	NM_002971	exon8	c.C1385A	p.P462H	ATGAGGGGGGCAG	.	191.0	9.0	131.0	0.0	.	228
SCAMP3	10067	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	155227359	155227359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCAMP3	NM_005698	exon6	c.A607G	p.I203V	AGAGGATAGAAAG	.	284.0	175.0	125.0	0.0	.	93
SCN4A	6329	hgsc.bcm.edu;bcgsc.ca	37	17	62048557	62048557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCN4A	NM_000334	exon5	c.T668C	p.V223A	CGCAGCACCCGGA	.	71.0	5.0	42.0	0.0	.	93
SEC31B	25956	hgsc.bcm.edu;bcgsc.ca	37	10	102275905	102275905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEC31B	NM_015490	exon3	c.A151G	p.R51G	GGTCCCTGAAATC	.	91.0	4.0	116.0	0.0	.	91
SEMA3D	223117	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	84644405	84644405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEMA3D	NM_152754	exon14	c.C1673T	p.A558V	GAGCATGCATTTC	.	159.0	35.0	148.0	0.0	.	138
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30976976	30976976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SETD1A	NM_014712	exon8	c.G1774A	p.G592S	CGGGGTGGCTCAC	.	83.0	34.0	55.0	0.0	.	93
SI	6476	hgsc.bcm.edu;bcgsc.ca	37	3	164758754	164758754	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SI	NM_001041	exon18	c.A2133G	p.E711E	TACTGTTTCTCCA	.	87.0	4.0	89.0	0.0	.	104
SIK3	23387	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	116744713	116744713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SIK3	NM_025164	exon12	c.A1313G	p.Q438R	GGAGCCTGGGGGT	.	128.0	30.0	90.0	0.0	.	919
SLAIN2	57606	hgsc.bcm.edu;bcgsc.ca	37	4	48384604	48384604	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_020846	exon5	c.A882G	p.A294A	ATATGCAGCCACC	.	45.0	4.0	29.0	0.0	.	.
SLC22A2	6582	hgsc.bcm.edu;bcgsc.ca	37	6	160671613	160671613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC22A2	NM_003058	exon3	c.A640G	p.S214G	CTTTGCTGACCAG	.	88.0	4.0	125.0	0.0	.	154
SLC47A2	146802	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19583316	19583316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC47A2	NM_152908	exon16	c.G1537T	p.A513S	TCTCTGCTCTCTG	.	87.0	28.0	64.0	0.0	.	90
SLC9C1	285335	hgsc.bcm.edu;bcgsc.ca	37	3	111888153	111888153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_183061	exon24	c.A2942G	p.H981R	TACAAGTGAGTTT	.	84.0	4.0	74.0	0.0	.	.
SMCHD1	23347	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2750117	2750117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMCHD1	NM_015295	exon31	c.C4004A	p.P1335H	TTGCCCCTAGGTA	.	94.0	23.0	106.0	0.0	.	46
SNX18	112574	hgsc.bcm.edu;bcgsc.ca	37	5	53813856	53813856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SNX18	NM_052870	exon1	c.A74G	p.E25G	AGCACGAGGTGCT	.	48.0	4.0	33.0	0.0	.	226
SOS2	6655	hgsc.bcm.edu;bcgsc.ca	37	14	50647366	50647366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOS2	NM_006939	exon7	c.A893G	p.Q298R	ATGTCCTGTGATA	.	56.0	4.0	48.0	0.0	.	849
SPRR2G	6706	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	153122487	153122487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPRR2G	NM_001014291	exon2	c.G100A	p.E34K	AAGGCTCAGGGCA	.	141.0	74.0	66.0	0.0	.	68
SPRY1	10252	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	124322782	124322782	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPRY1	NM_001258039	exon2	c.G36A	p.S12S	CAGTTCGTTAGTT	.	189.0	59.0	143.0	0.0	.	660
SRRM2	23524	hgsc.bcm.edu;bcgsc.ca	37	16	2812846	2812846	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SRRM2	NM_016333	exon11	c.T2317C	p.L773L	TCTCGCTTGTCTT	.	63.0	4.0	67.0	0.0	.	93
STARD13	90627	hgsc.bcm.edu;bcgsc.ca	37	13	33684128	33684128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STARD13	NM_178006	exon12	c.T2929C	p.W977R	CGTCCCACAGGTG	.	114.0	5.0	145.0	0.0	.	94
SYCP2	10388	hgsc.bcm.edu;bcgsc.ca	37	20	58489043	58489043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYCP2	NM_014258	exon11	c.G817A	p.G273R	TGTCTCCAAGCAT	.	149.0	6.0	126.0	0.0	.	525
TBC1D15	64786	hgsc.bcm.edu;bcgsc.ca	37	12	72300901	72300901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TBC1D15	NM_022771	exon12	c.T1334C	p.M445T	ACTGTATGTATGA	.	97.0	4.0	89.0	0.0	.	90
TCP11L1	55346	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33083146	33083146	+	Silent	SNP	C	C	T	rs145755006		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCP11L1	NM_001145541	exon7	c.C846T	p.H282H	TAAACACGCCCTG	.	123.0	29.0	92.0	0.0	C|1.000;T|0.000	90
TEX15	56154	hgsc.bcm.edu;bcgsc.ca	37	8	30703400	30703400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TEX15	NM_031271	exon1	c.A3134G	p.D1045G	TGAAGGTCACAAC	.	69.0	4.0	99.0	0.0	.	97
THRA	7067	hgsc.bcm.edu;bcgsc.ca	37	17	38230771	38230771	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	THRA	NM_001190918	exon2	c.T30C	p.C10C	GGAGTGTGGGTCA	.	117.0	5.0	83.0	0.0	.	186
TP53	7157	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7578457	7578457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	TP53,NS,carcinoma,0	TP53	NM_000546	exon5	c.G473A	p.R158H	ATGGCGCGGACGC	.	90.0	53.0	153.0	0.0	.	70225
TPR	7175	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	186319458	186319458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TPR	NM_003292	exon21	c.A2673C	p.K891N	TAGTTCTTTTGTG	.	237.0	108.0	138.0	0.0	.	228
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	179427959	179427959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTN	NM_001267550	exon326	c.A82900G	p.T27634A	GCTTGGTCACTGT	.	321.0	108.0	304.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179500233	179500233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTN	NM_001267550	exon227	c.G41818A	p.E13940K	TATCTTCTGGCAT	.	165.0	49.0	153.0	0.0	.	636
UBR1	197131	hgsc.bcm.edu;bcgsc.ca	37	15	43314950	43314950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UBR1	NM_174916	exon26	c.A2789G	p.Q930R	GCTTTTTGAAGCT	.	65.0	4.0	54.0	0.0	.	91
UNC80	285175	hgsc.bcm.edu;bcgsc.ca	37	2	210809878	210809878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UNC80	NM_032504	exon45	c.A6956G	p.E2319G	TCTTAGAGCTGGT	.	97.0	4.0	97.0	0.0	.	90
VMP1	81671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57808841	57808841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VMP1	NM_030938	exon2	c.C34T	p.R12C	CAGAGACGTGTAG	.	120.0	31.0	84.0	0.0	.	226
VWA9	81556	hgsc.bcm.edu;bcgsc.ca	37	15	65871932	65871932	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001207058	exon12	c.T1317C	p.A439A	CATGTCAGCCACC	.	110.0	5.0	98.0	0.0	.	.
WDR96	80217	hgsc.bcm.edu;bcgsc.ca	37	10	105971830	105971830	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR96	NM_025145	exon5	c.T670C	p.Y224H	GACCATAGATGAG	.	65.0	4.0	72.0	0.0	.	95
WHSC1L1	54904	hgsc.bcm.edu;bcgsc.ca	37	8	38178646	38178646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WHSC1L1	NM_017778	exon8	c.T1753C	p.S585P	ATTCAGAACGAGT	.	82.0	4.0	83.0	0.0	.	658
WIPF2	147179	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38430226	38430226	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WIPF2	NM_133264	exon6	c.T1155C	p.S385S	AGATTCTATCACC	.	68.0	24.0	52.0	0.0	.	93
XPNPEP1	7511	hgsc.bcm.edu;bcgsc.ca	37	10	111635319	111635319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XPNPEP1	NM_020383	exon15	c.A1358G	p.E453G	TACACCTCATCCA	.	90.0	4.0	112.0	0.0	.	94
YTHDF2	51441	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	29069727	29069727	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	YTHDF2	NM_016258	exon4	c.A945G	p.P315P	TAGCCCACCAGTG	.	373.0	47.0	196.0	0.0	.	92
ZBTB14	7541	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5291325	5291325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001243702	exon4	c.G882T	p.K294N	CTCATGCTTCCTC	.	123.0	43.0	115.0	0.0	.	.
ZDHHC2	51201	hgsc.bcm.edu;bcgsc.ca	37	8	17067945	17067945	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_016353	exon10	c.T906C	p.P302P	GGATCCTGAACAA	.	63.0	4.0	74.0	0.0	.	.
ZNF347	84671	hgsc.bcm.edu;bcgsc.ca	37	19	53645764	53645764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF347	NM_001172675	exon5	c.A320G	p.K107R	TTACTCTTCCCTT	.	119.0	5.0	118.0	0.0	.	90
ZNF423	23090	hgsc.bcm.edu;bcgsc.ca	37	16	49672029	49672029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF423	NM_015069	exon4	c.A1034G	p.H345R	TGCCGGTGGCTGT	.	89.0	6.0	72.0	0.0	.	228
ZNF598	90850	hgsc.bcm.edu;bcgsc.ca	37	16	2053113	2053113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF598	NM_178167	exon5	c.T344C	p.L115P	TGCTGCAGCAGCT	.	59.0	4.0	52.0	0.0	.	432
ZNF761	388561	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	53959189	53959189	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF761	NM_001008401	exon7	c.T1428C	p.R476R	TTTCCGTTTCAAA	.	40.0	10.0	41.0	0.0	.	91
ZNF841	284371	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	52569542	52569542	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001136499	exon7	c.T1593C	p.H531H	TCTCTGATGTACA	.	37.0	4.0	52.0	0.0	.	.