Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA2	20	hgsc.bcm.edu;bcgsc.ca	37	9	139913717	139913717	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCA2	NM_212533	exon11	c.T1557C	p.Y519Y	CTGGGCATAGTGA	.	84.0	4.0	159.0	0.0	.	90
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94502755	94502755	+	Silent	SNP	C	C	A	rs147884766	byfrequency;alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCA4	NM_000350	exon25	c.G3759T	p.T1253T	AGCCAGCGTCTCC	.	75.0	35.0	132.0	0.0	C|0.998;T|0.002	162
ACACB	32	hgsc.bcm.edu;bcgsc.ca	37	12	109617834	109617834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ACACB	NM_001093	exon10	c.T1760C	p.V587A	TGCAGGTGGAACA	.	76.0	4.0	197.0	0.0	.	98
ADAM23	8745	hgsc.bcm.edu;bcgsc.ca	37	2	207414830	207414830	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ADAM23	NM_003812	exon9	c.T879C	p.G293G	ACGTGGTATATTT	.	92.0	4.0	160.0	0.0	.	228
ADAMTS20	80070	hgsc.bcm.edu;bcgsc.ca	37	12	43856718	43856718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ADAMTS20	NM_025003	exon11	c.A1594G	p.T532A	AGTCTGTTCCATC	.	82.0	4.0	145.0	0.0	.	795
ALDH1A2	8854	hgsc.bcm.edu;bcgsc.ca	37	15	58306387	58306387	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ALDH1A2	NM_003888	exon2	c.A210G	p.Q70Q	TGCTTCTTGAACT	.	102.0	5.0	191.0	0.0	.	226
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73716837	73716837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ALMS1	NM_015120	exon10	c.A7748G	p.K2583R	ATGAAAAGGGATG	.	50.0	22.0	118.0	0.0	.	142
ANKRD36BP1	84832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	168216136	168216136	+	RNA	SNP	A	A	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	.	.	.	.	TTAAGTATTTCTT	.	200.0	58.0	266.0	1.0	.	.
AP1G1	164	hgsc.bcm.edu;bcgsc.ca	37	16	71779499	71779499	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AP1G1	NM_001030007	exon19	c.A1758G	p.R586R	AGGCATTCTCTCA	.	79.0	4.0	195.0	0.0	.	92
AP1G1	164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	71798318	71798318	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AP1G1	NM_001030007	exon10	c.G862T	p.G288X	CATTTCCTACATT	.	85.0	65.0	255.0	0.0	.	92
AP4E1	23431	hgsc.bcm.edu;bcgsc.ca	37	15	51289911	51289911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AP4E1	NM_007347	exon18	c.A2735G	p.E912G	CTACTGAATACAT	.	44.0	4.0	85.0	0.0	.	90
AQR	9716	hgsc.bcm.edu;bcgsc.ca	37	15	35166047	35166047	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AQR	NM_014691	exon30	c.T3579C	p.P1193P	AGGATTAGGTTCA	.	83.0	4.0	122.0	0.0	.	135
ARRB2	409	hgsc.bcm.edu;bcgsc.ca	37	17	4624255	4624255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ARRB2	NM_001257328	exon15	c.A1214G	p.D405G	CAGATGATGACAT	.	96.0	4.0	197.0	0.0	.	522
ASGR2	433	hgsc.bcm.edu;bcgsc.ca	37	17	7011175	7011175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ASGR2	NM_080912	exon5	c.A404G	p.Q135R	TGCTGCTGTTTCT	.	120.0	6.0	195.0	0.0	.	91
ASXL1	171023	hgsc.bcm.edu;bcgsc.ca	37	20	31024706	31024706	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ASXL1	NM_015338	exon12	c.T4191C	p.G1397G	GGTGGGTCACTTG	.	58.0	5.0	138.0	0.0	.	2057
ATG2B	55102	hgsc.bcm.edu;bcgsc.ca	37	14	96809538	96809538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATG2B	NM_018036	exon5	c.T662C	p.L221P	AGCTGAAGTAACT	.	94.0	4.0	153.0	0.0	.	93
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	96798729	96798729	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATG2B	NM_018036	exon10	c.G1381T	p.E461X	GGAACTCTCCCCA	.	226.0	84.0	367.0	1.0	.	93
ATP8B3	148229	hgsc.bcm.edu;bcgsc.ca	37	19	1785272	1785272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_138813	exon27	c.A3418G	p.T1140A	GGGCGGTCCAGTA	.	63.0	5.0	130.0	0.0	.	.
ATXN2	6311	hgsc.bcm.edu;bcgsc.ca	37	12	111963044	111963044	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATXN2	NM_002973	exon6	c.A1128G	p.A376A	TTCACCTGCATCC	.	54.0	4.0	138.0	0.0	.	136
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	364598	364598	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AXIN1	NM_181050	exon3	c.964delG	p.E322fs	GCTGCTCGCTGTC	.	37.0	25.0	113.0	0.0	.	684
AZU1	566	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	828354	828354	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AZU1	NM_001700	exon2	c.C183G	p.F61L	CCGCTTCGTGATG	.	53.0	11.0	95.0	0.0	.	91
BAI1	575	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143603336	143603336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	BAI1	NM_001702	exon20	c.C3035T	p.T1012M	TGTGCACGCTGGT	.	52.0	17.0	90.0	1.0	.	1129
C15orf41	84529	hgsc.bcm.edu;bcgsc.ca	37	15	36989565	36989565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C15orf41	NM_001130010	exon8	c.T518C	p.L173P	ACTTGCTTCTAGA	.	150.0	6.0	210.0	0.0	.	46
C2orf88	84281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191064868	191064868	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C2orf88	NM_001042519	exon2	c.G282A	p.G94G	TGAGGGGCCTTGA	.	135.0	23.0	233.0	0.0	.	68
C6orf223	221416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	43970788	43970788	+	Silent	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C6orf223	NM_153246	exon4	c.G654T	p.R218R	GGCACGGCTAATG	.	135.0	45.0	145.0	0.0	.	68
CAPN1	823	hgsc.bcm.edu;bcgsc.ca	37	11	64977873	64977873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CAPN1	NM_001198869	exon20	c.T2009C	p.V670A	TGGCGGTCGACTT	.	75.0	4.0	142.0	0.0	.	91
CCDC14	64770	hgsc.bcm.edu;bcgsc.ca	37	3	123634213	123634213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CCDC14	NM_022757	exon12	c.G2152A	p.D718N	CTTCATCAGAATC	.	78.0	4.0	127.0	0.0	.	68
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103397021	103397021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001146197	exon4	c.C6026T	p.T2009I	TGATGTGTACTGA	.	98.0	52.0	150.0	0.0	.	.
CCNK	8812	hgsc.bcm.edu;bcgsc.ca	37	14	99968554	99968554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001099402	exon7	c.A586G	p.T196A	TGCACCACCTTGT	.	82.0	4.0	119.0	0.0	.	.
CD1E	913	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158325760	158325760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CD1E	NM_001042584	exon4	c.G769A	p.G257R	CAGCGAGGGGACG	.	251.0	67.0	342.0	1.0	.	93
CDC27	996	hgsc.bcm.edu;bcgsc.ca	37	17	45247316	45247316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CDC27	NM_001114091	exon4	c.G344A	p.C115Y	GTAAAGCAAGCTG	.	60.0	4.0	84.0	0.0	.	291
CDKAL1	54901	hgsc.bcm.edu;bcgsc.ca	37	6	21065331	21065331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CDKAL1	NM_017774	exon12	c.A1108G	p.T370A	GGAGAAACAGATC	.	125.0	5.0	146.0	0.0	.	92
CDKN3	1033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	54878223	54878223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CDKN3	NM_005192	exon5	c.T215C	p.I72T	GTGGTATACAAGA	.	42.0	27.0	84.0	0.0	.	838
CEP152	22995	hgsc.bcm.edu;bcgsc.ca	37	15	49090248	49090248	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CEP152	NM_014985	exon3	c.T88C	p.L30L	GCTGCAACTGAGT	.	55.0	4.0	97.0	0.0	.	70
CHRND	1144	hgsc.bcm.edu;broad.mit.edu	37	2	233400022	233400022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CHRND	NM_000751	exon12	c.G1554T	p.X518Y	CATCTAGGGTGGG	.	60.0	4.0	62.0	0.0	.	155
CMAS	55907	hgsc.bcm.edu;bcgsc.ca	37	12	22215331	22215331	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CMAS	NM_018686	exon7	c.A1077G	p.K359K	GAGAAAAGAAATG	.	141.0	6.0	255.0	0.0	.	93
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	41318438	41318438	+	Silent	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CNTN1	NM_001256063	exon6	c.C480G	p.P160P	TGACCCCCCATAC	.	118.0	27.0	240.0	0.0	.	1149
CNTRL	11064	hgsc.bcm.edu;bcgsc.ca	37	9	123857201	123857201	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CNTRL	NM_007018	exon3	c.A384G	p.E128E	ACTTGAAGTACTG	.	54.0	4.0	102.0	0.0	.	661
COQ3	51805	hgsc.bcm.edu;bcgsc.ca	37	6	99823850	99823850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	COQ3	NM_017421	exon5	c.A695G	p.E232G	AATGTTTCTAGAT	.	63.0	4.0	164.0	0.0	.	91
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145619449	145619449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CPSF1	NM_013291	exon33	c.G3811T	p.V1271L	ACATACCCAGAAA	.	167.0	47.0	272.0	0.0	.	91
CTAGE15	441294	broad.mit.edu;mdanderson.org	37	7	143270096	143270096	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001008747	exon1	c.A1186C	p.M396L	AATGAAATGAAAC	.	915.0	82.0	955.0	1.0	.	.
CTH	1491	hgsc.bcm.edu;bcgsc.ca	37	1	70881689	70881689	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CTH	NM_153742	exon2	c.A219G	p.K73K	TGAAAAAGCAGTG	.	71.0	4.0	115.0	0.0	.	91
CTNNAL1	8727	hgsc.bcm.edu;bcgsc.ca	37	9	111734974	111734974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CTNNAL1	NM_003798	exon9	c.A1328G	p.Q443R	TCTTTCTGTTCAG	.	75.0	4.0	108.0	0.0	.	228
CXorf38	159013	hgsc.bcm.edu;bcgsc.ca	37	X	40489973	40489973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CXorf38	NM_144970	exon6	c.T854C	p.L285P	TTTCTAAGATCCT	.	67.0	4.0	199.0	0.0	.	131
CYB5R2	51700	hgsc.bcm.edu;bcgsc.ca	37	11	7687733	7687733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CYB5R2	NM_016229	exon8	c.A607G	p.T203A	GGTGAGTCCTGGC	.	81.0	4.0	168.0	0.0	.	90
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	65968921	65968921	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DENND4A	NM_001144823	exon24	c.G4228C	p.E1410Q	TAGATTCAGAATC	.	120.0	5.0	181.0	0.0	.	229
DGKH	160851	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	42764600	42764600	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DGKH	NM_001204504	exon17	c.C1974T	p.S658S	TGACAGCACAGAA	.	58.0	26.0	116.0	1.0	.	652
DLGAP3	58512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35334624	35334624	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DLGAP3	NM_001080418	exon7	c.C2067T	p.G689G	TGCCAGGCCCTCC	.	64.0	25.0	96.0	0.0	.	71
DNAH10	196385	hgsc.bcm.edu;bcgsc.ca	37	12	124305128	124305128	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DNAH10	NM_207437	exon23	c.A3648G	p.G1216G	ACTAGGAGTAGAG	.	63.0	4.0	155.0	0.0	.	95
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	41455835	41455835	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DSCAM	NM_001271534	exon24	c.G4231T	p.G1411X	TATTACCTCTGAT	.	86.0	35.0	134.0	0.0	.	101
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	41455834	41455834	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DSCAM	NM_001271534	exon25	c.4231+1G>C	.	TTATTACCTCTGA	.	87.0	34.0	131.0	0.0	.	101
DZIP3	9666	hgsc.bcm.edu;bcgsc.ca	37	3	108367792	108367792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DZIP3	NM_014648	exon17	c.A1990G	p.K664E	AAGAAGAAGACTA	.	95.0	4.0	133.0	0.0	.	91
E2F1	1869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	32265257	32265257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	E2F1	NM_005225	exon5	c.A815T	p.Q272L	TGGAGCTGGGTCT	.	111.0	47.0	182.0	0.0	.	838
EDEM1	9695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	5252876	5252876	+	Missense_Mutation	SNP	G	G	C	rs148682616	alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EDEM1	NM_014674	exon10	c.G1655C	p.S552T	TTCTCAGTGAGAC	.	73.0	31.0	151.0	0.0	G|0.999;A|0.000	137
EFHC2	80258	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	44109537	44109537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EFHC2	NM_025184	exon5	c.T761C	p.F254S	CACAAGAAGTAAT	.	60.0	4.0	184.0	0.0	.	135
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38337733	38337733	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EGFLAM	NM_001205301	exon2	c.207+2T>C	.	ACACTGTGAGTAC	.	57.0	26.0	128.0	0.0	.	187
EHBP1L1	254102	hgsc.bcm.edu;bcgsc.ca	37	11	65350029	65350029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EHBP1L1	NM_001099409	exon9	c.A1886G	p.E629G	AGTGTGAGGGACT	.	76.0	4.0	138.0	0.0	.	69
EMILIN2	84034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2890914	2890914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EMILIN2	NM_032048	exon4	c.G789T	p.K263N	CATCAAGTCTGAA	.	38.0	19.0	52.0	0.0	.	93
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144944289	144944289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EPPK1	NM_031308	exon1	c.G3133A	p.A1045T	CTGTGGCCACTTG	.	154.0	52.0	170.0	0.0	.	25
FBXL4	26235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	99374410	99374410	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FBXL4	NM_012160	exon3	c.T455G	p.I152S	ATTCTAATGACTG	.	63.0	45.0	187.0	0.0	.	227
FLOT1	10211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30707949	30707949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FLOT1	NM_005803	exon8	c.G709T	p.A237S	GATAGGCCAGGTC	.	91.0	24.0	93.0	0.0	.	90
FMNL2	114793	hgsc.bcm.edu;bcgsc.ca	37	2	153486415	153486415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FMNL2	NM_052905	exon20	c.A2546G	p.D849G	GTTTAGATCTGGT	.	87.0	4.0	141.0	0.0	.	516
FMNL2	114793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	153435453	153435453	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FMNL2	NM_052905	exon8	c.C757G	p.L253V	ATTGCACTAAGCC	.	50.0	19.0	116.0	0.0	.	516
GPM6B	2824	hgsc.bcm.edu;bcgsc.ca	37	X	13803853	13803853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPM6B	NM_001001995	exon3	c.T256C	p.S86P	CCCCGGAGAAGCA	.	119.0	5.0	352.0	0.0	.	130
GPR124	25960	hgsc.bcm.edu;bcgsc.ca	37	8	37699046	37699046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPR124	NM_032777	exon19	c.T3190C	p.F1064L	GGCCTCTTCGTCT	.	49.0	4.0	138.0	0.0	.	157
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54757190	54757190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPR84	NM_020370	exon2	c.T446C	p.V149A	CTGGCCACGCCCA	.	50.0	24.0	83.0	0.0	.	523
GPX8	493869	hgsc.bcm.edu;bcgsc.ca	37	5	54459895	54459895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPX8	NM_001008397	exon3	c.A479G	p.K160R	CAAAGAAGGAACC	.	52.0	4.0	87.0	0.0	.	68
GRIN2D	2906	hgsc.bcm.edu;broad.mit.edu	37	19	48908506	48908506	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GRIN2D	NM_000836	exon3	c.G981A	p.V327V	CGTAGTGGCCAGA	.	15.0	4.0	35.0	0.0	.	156
GSR	2936	hgsc.bcm.edu;bcgsc.ca	37	8	30537135	30537135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GSR	NM_000637	exon13	c.T1471C	p.F491L	CAGCAAAACCCTG	.	79.0	4.0	319.0	0.0	.	94
GTF3C3	9330	hgsc.bcm.edu;broad.mit.edu	37	2	197654717	197654717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GTF3C3	NM_001206774	exon5	c.T613C	p.F205L	ACTCAAACTGCAA	.	84.0	4.0	156.0	0.0	.	97
HDLBP	3069	hgsc.bcm.edu;bcgsc.ca	37	2	242194881	242194881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HDLBP	NM_005336	exon8	c.G988A	p.E330K	GGATCTCAACGGA	.	82.0	4.0	265.0	0.0	.	290
HYOU1	10525	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	118925746	118925746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HYOU1	NM_006389	exon6	c.T446C	p.V149A	CCCAACACTTCCT	.	31.0	4.0	71.0	0.0	.	90
ICAM3	3385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10449552	10449552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ICAM3	NM_002162	exon2	c.T149C	p.F50S	TTCACAAACAGGG	.	69.0	6.0	101.0	0.0	.	131
KCNAB1	7881	hgsc.bcm.edu;bcgsc.ca	37	3	155838405	155838405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KCNAB1	NM_172160	exon1	c.T5C	p.L2P	CGATGCTGGCAGC	.	63.0	4.0	104.0	0.0	.	94
KCNMB2	10242	hgsc.bcm.edu;bcgsc.ca	37	3	178560484	178560484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KCNMB2	NM_005832	exon6	c.T467C	p.M156T	AATCCATGTCCCT	.	79.0	4.0	138.0	0.0	.	91
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	24834953	24834953	+	Silent	SNP	A	A	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KIAA1217	NM_019590	exon21	c.A5532T	p.T1844T	CCAAACAGGACCA	.	196.0	73.0	346.0	0.0	.	98
KLB	152831	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	39447995	39447995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KLB	NM_175737	exon4	c.T1649C	p.L550P	CTCATCTGTACGT	.	43.0	4.0	29.0	0.0	.	69
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	135012267	135012267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KNDC1	NM_152643	exon14	c.G2255A	p.R752H	TGCAGCGTGACTC	.	43.0	13.0	37.0	0.0	.	229
KNTC1	9735	bcgsc.ca;mdanderson.org	37	12	123022962	123022962	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KNTC1	NM_014708	exon4	c.T327C	p.H109H	CCTACATCTTATT	.	20.0	3.0	85.0	0.0	.	543
KRTAP4-6	81871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39296198	39296198	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_030976	exon1	c.A542T	p.H181L	GTGGTGTGGCAGG	.	181.0	65.0	316.0	0.0	.	.
LBP	3929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36974925	36974925	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LBP	NM_004139	exon1	c.G6A	p.G2G	GATGGGGGCCTTG	.	56.0	25.0	80.0	0.0	.	91
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	88478582	88478582	+	Silent	SNP	C	C	T	rs139213290		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LDB3	NM_001171610	exon12	c.C1971T	p.D657D	GGAAGACGGGGAG	.	157.0	9.0	169.0	0.0	C|1.000;T|0.000	92
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170103365	170103365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LRP2	NM_004525	exon21	c.G3040A	p.E1014K	CCCCCTCGCATGT	.	149.0	51.0	259.0	0.0	.	175
LTK	4058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41799394	41799394	+	Silent	SNP	G	G	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LTK	NM_002344	exon11	c.C1440G	p.A480A	ATTGGGGGCTGTC	.	77.0	35.0	117.0	0.0	.	1377
MAP3K5	4217	ucsc.edu;bcgsc.ca	37	6	136932527	136932527	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MAP3K5	NM_005923	exon19	c.2416-2A>G	.	TCACCCTAGAGAA	.	39.0	4.0	106.0	1.0	.	982
MAP9	79884	hgsc.bcm.edu;bcgsc.ca	37	4	156294381	156294381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MAP9	NM_001039580	exon4	c.T388C	p.S130P	ATTCAGAGAAAGA	.	78.0	4.0	108.0	0.0	.	91
MARCH4	57574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217124210	217124210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MARCH4	NM_020814	exon4	c.G1058A	p.G353D	GGGGTGCCTGCGG	.	101.0	34.0	166.0	0.0	.	69
MARCH7	64844	hgsc.bcm.edu;bcgsc.ca	37	2	160615791	160615791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MARCH7	NM_022826	exon7	c.T1838C	p.L613P	TGGAGCTTAACCT	.	87.0	4.0	158.0	0.0	.	68
MASP1	5648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186938875	186938875	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MASP1	NM_001879	exon15	c.C1857T	p.A619A	CAGCGGGGCATAA	.	140.0	62.0	197.0	0.0	.	94
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30680046	30680046	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MDC1	NM_014641	exon5	c.1673delG	p.G558fs	GCTGGTCCCCCAA	.	217.0	41.0	246.0	0.0	.	273
METTL22	79091	hgsc.bcm.edu;bcgsc.ca	37	16	8735035	8735035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	METTL22	NM_024109	exon7	c.T820C	p.C274R	GACCTCTGCACAG	.	60.0	4.0	238.0	0.0	.	90
MORC3	23515	hgsc.bcm.edu;bcgsc.ca	37	21	37747486	37747486	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MORC3	NM_015358	exon17	c.T2712C	p.A904A	GCTGGCTATGATT	.	71.0	4.0	83.0	0.0	.	92
MRPL37	51253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	54681856	54681856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MRPL37	NM_016491	exon6	c.G1033A	p.V345M	CAGAGCGTGGGCA	.	170.0	7.0	361.0	0.0	.	90
MRPL48	51642	hgsc.bcm.edu;bcgsc.ca	37	11	73536778	73536778	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_016055	exon4	c.G138A	p.R46R	CAGTCGGCCCTAC	.	63.0	4.0	93.0	0.0	.	.
MRPS10	55173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42185570	42185570	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MRPS10	NM_018141	exon1	c.G18T	p.A6A	ACCGAACGCTGTC	.	59.0	16.0	85.0	0.0	.	90
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9087298	9087298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MUC16	NM_024690	exon1	c.C4517T	p.T1506I	GCACTGGTATCTG	.	66.0	28.0	153.0	0.0	.	566
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1256342	1256342	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_002458	exon22	c.C2658T	p.C886C	GGAGTGCAGCCAC	.	100.0	48.0	137.0	0.0	.	.
NAA35	60560	hgsc.bcm.edu;bcgsc.ca	37	9	88611410	88611410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NAA35	NM_024635	exon12	c.T974C	p.M325T	AAGAAATGGTGAA	.	90.0	4.0	166.0	0.0	.	92
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46275954	46275954	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NCOA3	NM_181659	exon18	c.A3390G	p.G1130G	TCAGGGACAATCA	.	90.0	52.0	178.0	0.0	.	229
NDUFAF7	55471	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37464985	37464985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_144736	exon4	c.G383A	p.G128E	GTAGGGGAACCCT	.	38.0	19.0	66.0	1.0	.	.
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152534626	152534626	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NEB	NM_004543	exon33	c.C3331T	p.L1111L	GAACCAGTTTAGG	.	227.0	94.0	382.0	1.0	.	145
NEBL	10529	hgsc.bcm.edu;bcgsc.ca	37	10	21134258	21134258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NEBL	NM_006393	exon12	c.A1156G	p.R386G	ATGACCTTCCTTT	.	74.0	6.0	105.0	0.0	.	92
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173997373	173997373	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NLGN1	NM_014932	exon6	c.T1582G	p.F528V	TGCAATTTCTCCA	.	201.0	93.0	323.0	0.0	.	231
NLRC4	58484	hgsc.bcm.edu;bcgsc.ca	37	2	32449645	32449645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NLRC4	NM_001199138	exon9	c.T2972C	p.L991S	TTGGATAACACTT	.	75.0	4.0	135.0	0.0	.	276
NUP62	23636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50412103	50412103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NUP62	NM_153719	exon3	c.G962A	p.G321E	GCCGCCCCTGCAG	.	39.0	13.0	95.0	0.0	.	615
OSCP1	127700	hgsc.bcm.edu;bcgsc.ca	37	1	36889022	36889022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	OSCP1	NM_145047	exon5	c.T562C	p.F188L	ACACAAAGCGACC	.	57.0	5.0	91.0	0.0	.	4
PAK1IP1	55003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10702604	10702604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PAK1IP1	NM_017906	exon3	c.A250G	p.T84A	ATAGGTACAATAA	.	76.0	17.0	97.0	0.0	.	68
PARP14	54625	hgsc.bcm.edu;bcgsc.ca	37	3	122419251	122419251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PARP14	NM_017554	exon6	c.T1850C	p.L617P	AAGGGCTCACTCA	.	58.0	4.0	108.0	0.0	.	525
PATL1	219988	hgsc.bcm.edu;bcgsc.ca	37	11	59423450	59423450	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PATL1	NM_152716	exon7	c.A792G	p.A264A	AAGCTGTGCTCTC	.	116.0	5.0	189.0	0.0	.	1
PCDHGB6	56100	hgsc.bcm.edu;broad.mit.edu	37	5	140790042	140790042	+	Missense_Mutation	SNP	A	A	G	rs185995562	by1000genomes;alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_032100	exon1	c.A2273G	p.H758R	TTGCACATACGGG	.	125.0	5.0	194.0	0.0	A|0.999;T|0.000	.
PEAK1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77473962	77473962	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_024776	exon5	c.G307C	p.G103R	TCCACCCTATGAT	.	124.0	44.0	197.0	0.0	.	.
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57326944	57326944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PEG3	NM_001146184	exon9	c.C2866A	p.P956T	CAAAAGGCAGAGA	.	119.0	43.0	283.0	0.0	.	164
PGGT1B	5229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	114548112	114548112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PGGT1B	NM_005023	exon9	c.A1121G	p.H374R	GAGATATGTACAT	.	153.0	52.0	296.0	0.0	.	90
PHIP	55023	hgsc.bcm.edu;bcgsc.ca	37	6	79692705	79692705	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PHIP	NM_017934	exon23	c.A2667G	p.K889K	CTTCTGTTTTTCA	.	50.0	4.0	123.0	0.0	.	579
PNPT1	87178	hgsc.bcm.edu;bcgsc.ca	37	2	55906857	55906857	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PNPT1	NM_033109	exon8	c.T639C	p.T213T	ATTTAAAGTACTA	.	59.0	4.0	144.0	0.0	.	90
POLG	5428	hgsc.bcm.edu;bcgsc.ca	37	15	89864157	89864157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	POLG	NM_002693	exon18	c.A2821G	p.I941V	GGCTGATGCCCAC	.	50.0	4.0	136.0	0.0	.	228
PPM1B	5495	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	44436409	44436409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PPM1B	NM_001033556	exon3	c.G907A	p.D303N	GTCTCAGATGAAG	.	25.0	4.0	54.0	0.0	.	227
PRG4	10216	hgsc.bcm.edu;bcgsc.ca	37	1	186275693	186275693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PRG4	NM_005807	exon7	c.A842G	p.E281G	ATAAAGAGACAAC	.	86.0	5.0	112.0	0.0	.	91
PRMT10	90826	hgsc.bcm.edu;bcgsc.ca	37	4	148559822	148559822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PRMT10	NM_138364	exon12	c.T2399C	p.L800S	GTATCCAACCTAA	.	88.0	4.0	186.0	0.0	.	91
PSG7	5676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43430131	43430131	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001206650	exon4	c.C671A	p.S224X	TGTCCTGAATGGT	.	90.0	43.0	171.0	0.0	.	.
PSMD5	5711	hgsc.bcm.edu;bcgsc.ca	37	9	123589185	123589185	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PSMD5	NM_005047	exon6	c.A672G	p.R224R	GGTGGCTCTAAAA	.	75.0	4.0	132.0	0.0	.	90
PTPRQ	374462	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	80887157	80887157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001145026	exon7	c.C947T	p.A316V	CACTTGCTACATT	.	56.0	17.0	94.0	0.0	.	.
PUS10	150962	hgsc.bcm.edu;broad.mit.edu	37	2	61175205	61175205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PUS10	NM_144709	exon16	c.G1424A	p.R475H	TGGAGGCGGAAGT	.	109.0	5.0	208.0	0.0	.	291
PUS7L	83448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	44148626	44148626	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PUS7L	NM_001098614	exon2	c.C423T	p.A141A	ATCACAGGCAAAA	.	75.0	25.0	119.0	0.0	.	91
RAPGEF4	11069	hgsc.bcm.edu;bcgsc.ca	37	2	173852991	173852991	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RAPGEF4	NM_007023	exon13	c.T1218C	p.I406I	AGTCATTTACGGC	.	57.0	4.0	74.0	0.0	.	274
RCOR1	23186	hgsc.bcm.edu;bcgsc.ca	37	14	103148307	103148307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RCOR1	NM_015156	exon3	c.A437G	p.E146G	TGTCAGAAGCAAA	.	72.0	4.0	109.0	0.0	.	91
REXO1	57455	hgsc.bcm.edu;bcgsc.ca	37	19	1827477	1827477	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	REXO1	NM_020695	exon2	c.A1311G	p.P437P	CGAAGATGGCTTC	.	34.0	4.0	60.0	0.0	.	90
RFWD2	64326	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175958553	175958553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RFWD2	NM_022457	exon16	c.C1792T	p.H598Y	TACGGTGTCCTTT	.	201.0	45.0	225.0	1.0	.	659
RGS4	5999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	163042190	163042190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RGS4	NM_001102445	exon3	c.A341G	p.K114R	GTGCAAAAGATAT	.	71.0	20.0	93.0	0.0	.	652
RHOH	399	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	40245536	40245536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RHOH	NM_004310	exon3	c.G530A	p.R177Q	GGAGACGAAACAG	.	105.0	10.0	216.0	0.0	.	660
RLF	6018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40705106	40705106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RLF	NM_012421	exon8	c.A4732G	p.S1578G	ATGAGTAGTGCCT	.	42.0	13.0	110.0	0.0	.	93
RNGTT	8732	hgsc.bcm.edu;bcgsc.ca	37	6	89322527	89322527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RNGTT	NM_003800	exon16	c.T1705C	p.S569P	CTTGAGAAGCTGC	.	72.0	4.0	208.0	0.0	.	91
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55542668	55542668	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RP1	NM_006269	exon4	c.T6226A	p.F2076I	AACAGATTCCAGG	.	68.0	24.0	89.0	0.0	.	102
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10464506	10464506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RP1L1	NM_178857	exon4	c.G7102A	p.E2368K	AACCTTCACTGGC	.	32.0	25.0	96.0	0.0	.	139
RRM1	6240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4142990	4142990	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RRM1	NM_001033	exon10	c.A1033T	p.N345Y	GAGACTAATCAGG	.	101.0	42.0	209.0	0.0	.	227
SBNO1	55206	hgsc.bcm.edu;bcgsc.ca	37	12	123793921	123793921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SBNO1	NM_001167856	exon27	c.A3566G	p.E1189G	GCTTCCTCCCATG	.	91.0	5.0	181.0	0.0	.	292
SCN3A	6328	hgsc.bcm.edu;bcgsc.ca	37	2	166019086	166019086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SCN3A	NM_001081676	exon8	c.A947G	p.K316R	TAATCCTTCCAGT	.	76.0	4.0	138.0	0.0	.	141
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	144890960	144890960	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SCRIB	NM_015356	exon15	c.G1934A	p.W645X	TTGTGCCAGCCCC	.	52.0	11.0	63.0	0.0	.	228
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4091349	4091349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SDK1	NM_152744	exon19	c.G2798A	p.G933E	ACCATGGACACAT	.	199.0	75.0	200.0	0.0	.	138
SETD2	29072	hgsc.bcm.edu;bcgsc.ca	37	3	47155420	47155420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	SETD2,NS,carcinoma,0	SETD2	NM_014159	exon5	c.T4661C	p.V1554A	AGTATGACTTCCA	.	83.0	5.0	123.0	0.0	.	1273
SH2D7	646892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78393469	78393469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001101404	exon5	c.C874T	p.P292S	AACAGGCCTGATG	.	67.0	43.0	115.0	0.0	.	.
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	49176517	49176517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SHC4	NM_203349	exon4	c.G768T	p.Q256H	TGAAAACTGAAGA	.	67.0	6.0	117.0	0.0	.	95
SLAMF7	57823	hgsc.bcm.edu;bcgsc.ca	37	1	160719673	160719673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SLAMF7	NM_021181	exon3	c.A439G	p.T147A	TGTGTGACCAATC	.	95.0	4.0	156.0	0.0	.	93
SLC30A3	7781	hgsc.bcm.edu;bcgsc.ca	37	2	27481800	27481800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SLC30A3	NM_003459	exon2	c.T98C	p.L33P	GTGAAGAGACTGA	.	91.0	4.0	134.0	0.0	.	90
SMNDC1	10285	hgsc.bcm.edu;bcgsc.ca	37	10	112063340	112063340	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SMNDC1	NM_005871	exon2	c.A6G	p.S2S	ATCCTCTGACATC	.	69.0	4.0	85.0	0.0	.	91
SNX13	23161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	17933019	17933019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SNX13	NM_015132	exon3	c.C164T	p.S55L	TTCTCTGAGTTTG	.	199.0	41.0	229.0	0.0	.	650
SP4	6671	hgsc.bcm.edu;bcgsc.ca	37	7	21469063	21469063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SP4	NM_003112	exon3	c.A280G	p.T94A	CTGGTAACAACGC	.	104.0	5.0	105.0	0.0	.	95
SPATS2L	26010	hgsc.bcm.edu;bcgsc.ca	37	2	201334662	201334662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SPATS2L	NM_001100423	exon11	c.A983G	p.D328G	AATATGACGAGGA	.	125.0	6.0	174.0	0.0	.	48
STAU1	6780	hgsc.bcm.edu;bcgsc.ca	37	20	47740949	47740949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	STAU1	NM_017453	exon7	c.A785G	p.K262R	CTAGGCTTTACTC	.	65.0	4.0	112.0	0.0	.	230
SUPT16H	11198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	21829290	21829311	+	Frame_Shift_Del	DEL	TAATAATTCGGAAAGCATTCTG	TAATAATTCGGAAAGCATTCTG	-	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	TAATAATTCGGAAAGCATTCTG	TAATAATTCGGAAAGCATTCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SUPT16H	NM_007192	exon16	c.1855_1876del	p.619_626del	CTTCTTTAATAAT	.	94.0	9.0	190.0	0.0	.	90
SYT4	6860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	40853607	40853607	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SYT4	NM_020783	exon2	c.G787T	p.G263X	CAATTCCCGAGAG	.	131.0	57.0	217.0	0.0	.	132
TBC1D14	57533	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	7006574	7006574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TBC1D14	NM_001113361	exon8	c.T1274C	p.L425P	CAGAGCTCTTTGA	.	39.0	4.0	79.0	0.0	.	92
TBCK	93627	hgsc.bcm.edu;bcgsc.ca	37	4	107154200	107154200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TBCK	NM_001163436	exon17	c.T1534C	p.C512R	GATGACAGCGAGG	.	76.0	4.0	109.0	0.0	.	336
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123654550	123654550	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001163278	exon18	c.C3118T	p.L1040L	TCCGTAGCAGGGT	.	79.0	56.0	325.0	1.0	.	.
TLR2	7097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154625449	154625449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TLR2	NM_003264	exon3	c.G1390A	p.V464I	TTAGATGTTAGCA	.	101.0	44.0	144.0	0.0	.	523
TMEM126A	84233	hgsc.bcm.edu;bcgsc.ca	37	11	85367380	85367380	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM126A	NM_032273	exon5	c.A423G	p.K141K	ACACAAAGGGAAC	.	83.0	4.0	161.0	0.0	.	92
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	128899651	128899651	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM132C	NM_001136103	exon2	c.A460G	p.M154V	CACATCATGGGCA	.	51.0	6.0	150.0	0.0	.	68
TMEM8B	51754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35853674	35853674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM8B	NM_001042590	exon13	c.G1256T	p.G419V	TTGCGGGCAGTGT	.	182.0	65.0	289.0	0.0	.	91
TRAPPC9	83696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141381200	141381200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TRAPPC9	NM_031466	exon8	c.C1508T	p.A503V	AAGAACGCAGACT	.	65.0	21.0	93.0	0.0	.	228
TRIP11	9321	hgsc.bcm.edu;bcgsc.ca	37	14	92474090	92474090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TRIP11	NM_004239	exon10	c.T1421C	p.L474P	AAATTAAGTCTTA	.	95.0	4.0	155.0	0.0	.	1400
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2107122	2107122	+	Missense_Mutation	SNP	T	T	G	rs45517131	alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TSC2	NM_001114382	exon9	c.T791G	p.L264R	ACCTCCTTGGCAC	.	92.0	5.0	251.0	0.0	.	1908
TTLL2	83887	ucsc.edu;bcgsc.ca	37	6	167738685	167738685	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TTLL2	NM_031949	exon1	c.C24T	p.S8S	GTGTTCCTCCACA	.	36.0	4.0	94.0	1.0	.	92
UBQLN3	50613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5528949	5528949	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UBQLN3	NM_017481	exon2	c.G1840C	p.A614P	AGTGAGCCTCAGG	.	70.0	29.0	126.0	0.0	.	93
UHRF1BP1	54887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34831811	34831811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UHRF1BP1	NM_017754	exon15	c.C3248T	p.A1083V	GGGTGGCAGCCCC	.	61.0	17.0	99.0	0.0	.	93
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54825124	54825124	+	Silent	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UNC13C	NM_001080534	exon24	c.T5556A	p.V1852V	CCAGGTTATAATT	.	55.0	18.0	96.0	0.0	.	51
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33495162	33495162	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UNC45B	NM_001267052	exon10	c.C1234G	p.L412V	TTTGACCTGGGCA	.	121.0	53.0	241.0	0.0	.	157
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210837964	210837964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UNC80	NM_032504	exon55	c.G8359A	p.A2787T	GGGCTGGCTGAGT	.	106.0	42.0	199.0	0.0	.	90
USP31	57478	hgsc.bcm.edu;bcgsc.ca	37	16	23093795	23093795	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	USP31	NM_020718	exon12	c.T1914C	p.P638P	CACATCAGGCAGA	.	69.0	4.0	186.0	0.0	.	663
VCL	7414	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75871688	75871688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	VCL	NM_014000	exon19	c.G2767A	p.V923M	GCTGAGGTGGGTA	.	103.0	26.0	155.0	1.0	.	93
WDR33	55339	hgsc.bcm.edu;bcgsc.ca	37	2	128480841	128480841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	WDR33	NM_018383	exon12	c.A1277G	p.D426G	ACTCCATCTTCAG	.	85.0	4.0	107.0	0.0	.	90
XIRP2	129446	hgsc.bcm.edu;bcgsc.ca	37	2	168099632	168099632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	XIRP2	NM_152381	exon9	c.T1730C	p.I577T	AGTCCATTAGATG	.	89.0	5.0	191.0	0.0	.	104
ZDHHC21	340481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14639974	14639974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZDHHC21	NM_178566	exon8	c.A541G	p.R181G	CTAGTCTCATTAT	.	61.0	7.0	76.0	0.0	.	226
ZFP69	339559	hgsc.bcm.edu;bcgsc.ca	37	1	40961639	40961639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_198494	exon6	c.T1489C	p.C497R	TACGAATGTAACG	.	90.0	7.0	105.0	0.0	.	.
ZNF143	7702	hgsc.bcm.edu;bcgsc.ca	37	11	9546829	9546829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF143	NM_003442	exon15	c.T1729C	p.S577P	ACTGCCTCATCAG	.	83.0	5.0	155.0	0.0	.	90
ZNF343	79175	hgsc.bcm.edu;bcgsc.ca	37	20	2465247	2465247	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF343	NM_024325	exon6	c.T360C	p.C120C	CTGCTGACAGGAG	.	81.0	4.0	101.0	0.0	.	92
ZNF385D	79750	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	21606170	21606170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF385D	NM_024697	exon3	c.C172T	p.P58S	GAATCGGGTCCAT	.	43.0	4.0	82.0	0.0	.	156
ZNF479	90827	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	57188564	57188564	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF479	NM_033273	exon5	c.A558T	p.K186N	GTTACATTTGAAA	.	335.0	89.0	339.0	0.0	.	72
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71592804	71592804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF638	NM_014497	exon6	c.G1963T	p.V655L	AAACAGGTGTCTG	.	118.0	47.0	198.0	0.0	.	94
ZNF81	347344	hgsc.bcm.edu;bcgsc.ca	37	X	47775710	47775710	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF81	NM_007137	exon5	c.T1665C	p.V555V	CTATGTTTGTGCT	.	86.0	4.0	211.0	0.0	.	130
ZNF835	90485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57175497	57175497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF835	NM_001005850	exon2	c.C1070A	p.T357N	TCTCCGGTGTGCG	.	74.0	44.0	138.0	0.0	.	72
BRD7	29117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	50367608	50367609	+	Splice_Site	DNP	CC	CC	AT	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	.	.	.	.	GTCTTTCCTGAAA	.	50.0	35.0	131.0	0.0	.	.