Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ABCA13 154664 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 7 48318670 48318670 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ABCA13 NM_152701 exon18 c.C7879A p.Q2627K ATGAACCAATCTA . 55.0 20.0 63.0 0.0 . 521 ABI3BP 25890 hgsc.bcm.edu;bcgsc.ca 37 3 100569517 100569517 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ABI3BP NM_015429 exon14 c.A1287G p.P429P TGCCCTTGGCTGT . 77.0 5.0 90.0 0.0 . 138 ACADVL 37 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7123814 7123814 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ACADVL NM_001270447 exon4 c.C239A p.S80Y ACCCCTCTGACGC . 102.0 36.0 79.0 0.0 . 93 APLP2 334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 130011950 130011950 + Missense_Mutation SNP T T G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . APLP2 NM_001642 exon17 c.T2171G p.I724S GCACCATCAGCCA . 111.0 33.0 91.0 0.0 . 93 AQP3 360 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 33442307 33442307 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . AQP3 NM_004925 exon5 c.A702G p.A234A GAAGACTGCAGAG . 60.0 21.0 69.0 1.0 . 90 ATP12A 479 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 25274939 25274939 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 ATP12A,NS,carcinoma,+1 ATP12A NM_001185085 exon13 c.A1778G p.D593G CATTTGACATAGA . 140.0 60.0 135.0 0.0 . 137 CACNG4 27092 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 65026831 65026831 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CACNG4 NM_014405 exon4 c.G695A p.R232K ATGCCAGGATGCC . 173.0 68.0 150.0 0.0 . 90 CASD1 64921 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 7 94164818 94164818 + Missense_Mutation SNP G G C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CASD1 NM_022900 exon8 c.G826C p.E276Q CTTCCTGAATCGA . 194.0 77.0 191.0 0.0 . 70 CELF6 60677 hgsc.bcm.edu;bcgsc.ca 37 15 72581260 72581260 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CELF6 NM_001172684 exon9 c.G1042T p.G348C CCACGCCGGGGCT . 207.0 92.0 194.0 0.0 . 154 CHRM5 1133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 34355738 34355738 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 CHRM5,brain,glioma,-1 CHRM5 NM_012125 exon3 c.T820C p.S274P TCATCCTCCCGCA . 54.0 24.0 33.0 0.0 . 91 CHST3 9469 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 10 73767842 73767842 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CHST3 NM_004273 exon3 c.C1053T p.S351S CCTGTCCGCGGAG . 39.0 19.0 28.0 0.0 . 90 CNTROB 116840 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 17 7851016 7851016 + Missense_Mutation SNP G G C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CNTROB NM_001037144 exon14 c.G2121C p.E707D GCTGGAGGGCCTC . 124.0 72.0 107.0 0.0 . 153 COL11A2 1302 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 33141808 33141808 + Silent SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . COL11A2 NM_080680 exon33 c.C2509A p.R837R CTCCCCGAGGCCC . 187.0 66.0 158.0 0.0 . 95 COMP 1311 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 18899995 18899995 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . COMP NM_000095 exon5 c.C502T p.L168L AAGCCAGCCCCAC . 82.0 31.0 87.0 0.0 . 90 CPA5 93979 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 7 130007288 130007288 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CPA5 NM_080385 exon11 c.C914T p.A305V TGGCTGCCATAGT . 301.0 91.0 269.0 0.0 . 92 CSMD3 114788 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 8 113585826 113585826 + Missense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CSMD3 NM_198123 exon24 c.C3946A p.R1316S GTCCGCGCATAGA . 134.0 35.0 116.0 0.0 . 1132 CYP11B2 1585 hgsc.bcm.edu;bcgsc.ca 37 8 143996601 143996601 + Missense_Mutation SNP C C G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CYP11B2 NM_000498 exon3 c.G456C p.K152N CACGGCCTTGGGC . 297.0 24.0 196.0 0.0 . 90 DCP1A 55802 hgsc.bcm.edu;ucsc.edu 37 3 53326495 53326495 + Silent SNP T T A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DCP1A NM_018403 exon7 c.A987T p.A329A AACCTGTGCAGTA . 431.0 163.0 465.0 0.0 . 90 DDX46 9879 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 5 134121198 134121198 + Silent SNP T T A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DDX46 NM_014829 exon11 c.T1386A p.T462T GATTACTAAAGAG . 170.0 35.0 157.0 0.0 . 227 DHX34 9704 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 47876048 47876048 + Silent SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DHX34 NM_014681 exon8 c.C1830A p.A610A CGCAGCCGCACTT . 159.0 106.0 186.0 0.0 . 231 DNAH17 8632 hgsc.bcm.edu;ucsc.edu 37 17 76472713 76472713 + Nonsense_Mutation SNP C C A rs116230343 byfrequency;alternate_allele TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DNAH17 NM_173628 exon52 c.G8095T p.E2699X CTTTTTCGTCAAC . 513.0 295.0 279.0 0.0 C|0.986;T|0.014 142 DNAJC2 27000 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 102957429 102957429 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DNAJC2 NM_014377 exon13 c.G1275A p.E425E CTCTTTCTCTTTT . 232.0 88.0 280.0 0.0 . 158 DOCK9 23348 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 99515318 99515318 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DOCK9 NM_001130049 exon32 c.G3537A p.R1179R ATTGATCCGCTGG . 117.0 43.0 134.0 0.0 . 90 EDN3 1908 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 20 57896179 57896179 + Missense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . EDN3 NM_207034 exon3 c.G473T p.R158L ACTTGCGCTGCGC . 188.0 65.0 127.0 0.0 . 91 EFCAB6 64800 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 43936088 43936088 + Silent SNP G G A rs144783076 byfrequency TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . EFCAB6 NM_022785 exon28 c.C3798T p.D1266D CGAGACGTCAGGG . 145.0 53.0 93.0 0.0 G|1.000;A|0.000 97 ENTPD1-AS1 0 bcgsc.ca;mdanderson.org 37 10 97772065 97772065 + RNA SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . . . . . TTAAATATTTTTG . 25.0 11.0 26.0 0.0 . . EXOC4 60412 ucsc.edu;bcgsc.ca 37 7 133314861 133314861 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . EXOC4 NM_021807 exon10 c.G1481A p.R494K GAGCCAGAAACAT . 89.0 29.0 101.0 0.0 . 159 FAM13A 10144 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 89652508 89652508 + Missense_Mutation SNP A A C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FAM13A NM_014883 exon23 c.T2915G p.F972C TCTTCAAAATCCC . 25.0 8.0 39.0 0.0 . 70 FAM46D 169966 broad.mit.edu;bcgsc.ca 37 X 79699173 79699173 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FAM46D NM_001170574 exon5 c.C1135T p.P379S TACCACCCACTGC . 33.0 5.0 44.0 0.0 . 130 FAM47C 442444 hgsc.bcm.edu;bcgsc.ca 37 X 37026590 37026590 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FAM47C NM_001013736 exon1 c.G107A p.R36K AGCACAGGCGCCT . 313.0 218.0 285.0 0.0 . 111 FAM8A1 51439 hgsc.bcm.edu;mdanderson.org 37 6 17601073 17601073 + Nonsense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FAM8A1 NM_016255 exon1 c.C433T p.Q145X AGCCCCCAGCCCT . 70.0 28.0 44.0 0.0 . 90 FANCA 2175 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 16 89849430 89849430 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FANCA NM_000135 exon16 c.G1551A p.R517R GGCCAGCCGTGTC . 394.0 155.0 327.0 0.0 . 1130 FANCF 2188 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 22646565 22646565 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FANCF NM_022725 exon1 c.T792C p.T264T GCGGCTAGTCACT . 108.0 32.0 67.0 0.0 . 1083 FHOD3 80206 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 18 34182680 34182680 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FHOD3 NM_025135 exon8 c.A762G p.K254K GGAAAAAGATGGA . 244.0 22.0 236.0 0.0 . 139 FLG 2312 hgsc.bcm.edu;bcgsc.ca 37 1 152277969 152277969 + Missense_Mutation SNP A A C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FLG NM_002016 exon3 c.T9393G p.D3131E AGAGCTATCTACC . 448.0 112.0 344.0 0.0 . 106 FREM2 341640 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 13 39343836 39343836 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FREM2 NM_207361 exon4 c.T5532C p.D1844D GAGTGATGGGGAG . 303.0 114.0 259.0 0.0 . 100 FSBP 100861412 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 8 95449096 95449096 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_001256141 exon1 c.A1G p.M1V CTACCATTGTTCT . 189.0 50.0 146.0 0.0 . . GAB4 128954 ucsc.edu;bcgsc.ca;mdanderson.org 37 22 17489003 17489003 + Missense_Mutation SNP A A T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GAB4 NM_001037814 exon1 c.T2A p.M1K AGGGACATGGGGG . 109.0 34.0 95.0 0.0 . 91 GAREM 64762 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 18 29867200 29867200 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_022751 exon4 c.G1360A p.E454K GCTCTTCGTAGGG . 103.0 12.0 86.0 0.0 . . GOLGA2 2801 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 131022366 131022366 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GOLGA2 NM_004486 exon18 c.C1780T p.L594L CCTTCAGCTCGCT . 40.0 8.0 33.0 0.0 . 91 GPR125 166647 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 4 22425934 22425934 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GPR125 NM_145290 exon11 c.G1485A p.L495L ATCAGCCAACATG . 220.0 88.0 247.0 0.0 . 91 GPR17 2840 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 128408959 128408959 + Missense_Mutation SNP G G A rs151092449 TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GPR17 NM_005291 exon3 c.G734A p.R245H TCATCCGCAGCCT . 183.0 60.0 137.0 0.0 G|1.000;A|0.000 514 HIP1 3092 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 75174427 75174427 + Missense_Mutation SNP G G C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . HIP1 NM_005338 exon26 c.C2619G p.I873M GGCTGAGATAAGT . 62.0 25.0 78.0 0.0 . 1085 IGF1R 3480 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 99467825 99467825 + Silent SNP G G A rs146023463 TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . IGF1R NM_000875 exon13 c.G2694A p.P898P AAACCCGGGGAAC . 195.0 72.0 198.0 0.0 G|1.000;A|0.000 1490 IL18 3606 hgsc.bcm.edu;ucsc.edu 37 11 112020884 112020884 + Nonsense_Mutation SNP G G C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . IL18 NM_001562 exon4 c.C137G p.S46X ATGACTGATAATT . 100.0 37.0 94.0 0.0 . 90 IL7R 3575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 35867499 35867499 + Missense_Mutation SNP A A G rs199742437 alternate_allele TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . IL7R NM_002185 exon3 c.A313G p.S105G GGAAAGAGCAATA . 100.0 25.0 70.0 0.0 . 157 INADL 10207 ucsc.edu;bcgsc.ca;mdanderson.org 37 1 62321778 62321778 + Missense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . INADL NM_176877 exon18 c.G2189T p.G730V GTGGGGGACTATT . 341.0 66.0 226.0 1.0 . 94 IQGAP3 128239 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 156496391 156496391 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . IQGAP3 NM_178229 exon38 c.G4783T p.D1595Y GGAGATCCTAGGA . 78.0 20.0 71.0 0.0 . 96 ITGA10 8515 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 145534216 145534216 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ITGA10 NM_003637 exon14 c.A1721G p.E574G CTCTGGAAGATGG . 191.0 50.0 154.0 0.0 . 231 KANK1 23189 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 713074 713074 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KANK1 NM_001256876 exon7 c.T2308C p.Y770H GACAACTATCTGG . 106.0 40.0 109.0 0.0 . 517 KCNA3 3738 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 111216834 111216834 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KCNA3 NM_002232 exon1 c.598delG p.D200fs CCTCGTCCTCGCG . 110.0 55.0 69.0 0.0 . 95 KIAA0100 9703 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 26961916 26961916 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KIAA0100 NM_014680 exon16 c.A2689G p.M897V CCTTCATCAGCTC . 80.0 34.0 116.0 0.0 . 93 KRTAP26-1 388818 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 21 31691918 31691918 + Missense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KRTAP26-1 NM_203405 exon1 c.C436A p.Q146K AGAATTGGGGGCG . 140.0 71.0 164.0 0.0 . 69 LAMC1 3915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 183095398 183095398 + Splice_Site SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . LAMC1 NM_002293 exon16 c.2944+1G>T . GCAAACGTAAGGG . 284.0 131.0 140.0 0.0 . 252 LARP1B 55132 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 129028308 129028308 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . LARP1B NM_032239 exon9 c.C828A p.S276R GGATAGCACAGAA . 111.0 46.0 124.0 0.0 . 68 LRP12 29967 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 8 105503084 105503084 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . LRP12 NM_013437 exon7 c.C2397T p.A799A ATCTGAGGCAAGA . 160.0 37.0 131.0 0.0 . 90 LRP8 7804 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 53716471 53716471 + Missense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . LRP8 NM_004631 exon17 c.C2567A p.T856N CTTTTGGTGTTCT . 209.0 111.0 204.0 0.0 . 90 MCAT 27349 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 22 43538972 43538972 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MCAT NM_014507 exon1 c.C383T p.S128L GCCAGCGATGCCA . 199.0 70.0 136.0 0.0 . 91 MED10 84246 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 5 6374436 6374436 + Splice_Site SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MED10 NM_032286 exon4 c.309+1G>A . GTCTTACCTTCAT . 266.0 59.0 185.0 0.0 . 91 MRPS16 51021 ucsc.edu;bcgsc.ca 37 10 75010617 75010617 + Missense_Mutation SNP T T C rs146290698 TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MRPS16 NM_016065 exon3 c.A407G p.E136G TATGTTTCTGTAG . 148.0 54.0 137.0 2.0 T|1.000;C|0.000 90 MTF1 4520 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 38281195 38281195 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MTF1 NM_005955 exon11 c.C1875T p.I625I TTTGATGATGATC . 239.0 110.0 173.0 0.0 . 92 MUC5B 727897 bcgsc.ca;mdanderson.org 37 11 1276338 1276338 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_002458 exon36 c.G15732A p.K5244K TTGCAAGGACATG . 197.0 61.0 153.0 1.0 . . MYPOP 339344 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 46393962 46393962 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MYPOP NM_001012643 exon3 c.C1119T p.L373L CGGAGGGAGCGGG . 75.0 25.0 64.0 0.0 . 90 NCOA7 135112 broad.mit.edu;bcgsc.ca 37 6 126203615 126203615 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NCOA7 NM_001199619 exon8 c.T617C p.V206A AAAGAGTCTTATC . 50.0 4.0 57.0 0.0 . 227 NDST4 64579 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 4 115858629 115858629 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NDST4 NM_022569 exon5 c.G1252T p.A418S CCACAGCATAGCC . 270.0 97.0 255.0 0.0 . 94 NEGR1 257194 ucsc.edu;bcgsc.ca;mdanderson.org 37 1 72400944 72400944 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NEGR1 NM_173808 exon2 c.G227A p.S76N ATAATACTTGACC . 103.0 25.0 72.0 0.0 . 92 OR2M5 127059 ucsc.edu;bcgsc.ca 37 1 248308863 248308863 + Silent SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . OR2M5 NM_001004690 exon1 c.C414A p.P138P GAGACCCAAAATT . 512.0 237.0 393.0 2.0 . 71 OR5F1 338674 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 55761365 55761365 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . OR5F1 NM_003697 exon1 c.C737T p.T246I ATGGCTGTCAGGT . 85.0 34.0 92.0 0.0 . 70 OR5T2 219464 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 56000212 56000212 + Missense_Mutation SNP T T A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . OR5T2 NM_001004746 exon1 c.A450T p.E150D AAAGCATTCTGTG . 208.0 77.0 177.0 0.0 . 70 PACSIN2 11252 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 22 43284655 43284655 + Silent SNP A A C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PACSIN2 NM_007229 exon5 c.T603G p.V201V CTTAAGAACATCT . 236.0 103.0 202.0 0.0 . 68 PAQR7 164091 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 26189417 26189417 + Missense_Mutation SNP T T G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PAQR7 NM_178422 exon2 c.A914C p.E305A AGAGGCTCATAGA . 248.0 149.0 306.0 0.0 . 71 PCDHA11 56138 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140249054 140249054 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PCDHA11 NM_018902 exon1 c.G366A p.E122E CGTGGAGGTGAAG . 150.0 78.0 158.0 0.0 . 67 PIK3CA 5290 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 3 178952085 178952085 + Missense_Mutation SNP A A G rs121913279 bycluster TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 PIK3CA,bladder,carcinoma,0 PIK3CA NM_006218 exon21 c.A3140G p.H1047R ATGCACATCATGG . 127.0 47.0 123.0 0.0 . 27752 PLEKHG1 57480 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 151144808 151144808 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PLEKHG1 NM_001029884 exon15 c.A1466G p.Q489R ACATCCAAAAGGT . 31.0 15.0 54.0 0.0 . 92 POLE 5426 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 12 133219191 133219191 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . POLE NM_006231 exon37 c.A4853G p.N1618S CCATAGTTGATCT . 141.0 39.0 77.0 0.0 . 233 PPAPDC3 84814 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 9 134183331 134183331 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PPAPDC3 NM_032728 exon2 c.C473T p.T158M TCATGACGGTGGC . 31.0 8.0 12.0 0.0 . 153 PPP2R5B 5526 ucsc.edu;bcgsc.ca;mdanderson.org 37 11 64700298 64700298 + Missense_Mutation SNP A A G rs75667682 alternate_allele TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PPP2R5B NM_006244 exon12 c.A1178G p.N393S AGGACAACTGCCA . 132.0 42.0 118.0 1.0 . 660 PRMT3 10196 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 20409581 20409581 + Silent SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PRMT3 NM_005788 exon2 c.G45T p.V15V CGCTGTGGAGAAT . 213.0 76.0 186.0 0.0 . 90 PRUNE2 158471 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 9 79322807 79322807 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PRUNE2 NM_015225 exon8 c.G4383A p.K1461K AAGATCCTTTTCA . 163.0 45.0 142.0 0.0 . 157 PYHIN1 149628 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158908887 158908887 + Silent SNP T T A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PYHIN1 NM_152501 exon4 c.T429A p.S143S ACCATCTGAAGAA . 149.0 50.0 130.0 0.0 . 94 RAB32 10981 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 146875606 146875606 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RAB32 NM_006834 exon3 c.A543G p.I181M AAACATAGAGGAA . 63.0 38.0 86.0 0.0 . 651 RAC2 5880 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 37622734 37622734 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RAC2 NM_002872 exon6 c.G558A p.K186K GGCGCGCTTCTGC . 70.0 24.0 55.0 0.0 . 723 RBMXL2 27288 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 7111267 7111267 + Missense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RBMXL2 NM_014469 exon1 c.G916T p.G306C GGAGGAGGCCGCT . 109.0 48.0 87.0 0.0 . 68 RGS7 6000 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 240978079 240978079 + Splice_Site SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RGS7 NM_002924 exon13 c.784-2A>G . TTTATCTGAAAAG . 85.0 24.0 47.0 0.0 . 232 RLTPR 146206 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 67683061 67683061 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RLTPR NM_001013838 exon18 c.C1674T p.F558F GAACTTCAACGTC . 143.0 50.0 132.0 0.0 . 67 RNF139 11236 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 125498418 125498418 + Missense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RNF139 NM_007218 exon2 c.G528T p.E176D CAGAGAGACTTTA . 192.0 104.0 121.0 0.0 . 226 RSPH6A 81492 hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 19 46305378 46305378 + Nonsense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RSPH6A NM_030785 exon4 c.G1798T p.E600X CCTTACCTGCATC . 128.0 45.0 108.0 0.0 . 91 SCAF11 9169 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 46357973 46357973 + Splice_Site SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SCAF11 . . . . GTTTCCTATAAGA . 23.0 13.0 19.0 0.0 . 93 SLC22A20 440044 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 11 64981537 64981537 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLC22A20 NM_001004326 exon1 c.C194T p.S65L ACGACTCGGGGGC . 63.0 20.0 65.0 0.0 . 23 SLC8A1 6546 ucsc.edu;bcgsc.ca 37 2 40366656 40366656 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLC8A1 NM_021097 exon9 c.G2430T p.M810I GCCAATCATGAGG . 178.0 60.0 174.0 0.0 . 93 SLITRK4 139065 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 142717685 142717685 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLITRK4 NM_001184750 exon2 c.A1240G p.T414A TCACTGTAATTTG . 109.0 80.0 117.0 0.0 . 193 SMPD1 6609 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6412065 6412065 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SMPD1 NM_000543 exon1 c.G237A p.R79R GCCCCGGCTCCGA . 90.0 23.0 91.0 0.0 . 90 SPTBN1 6711 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 2 54850714 54850714 + Missense_Mutation SNP T T G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SPTBN1 NM_003128 exon10 c.T1163G p.L388R GGAAGCTCATCTC . 128.0 57.0 138.0 0.0 . 140 SYCE1L 100130958 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 77245136 77245136 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_001129979 exon7 c.A386G p.D129G TGGAGGATCTGAT . 211.0 84.0 189.0 0.0 . . SYT9 143425 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 7324549 7324549 + Missense_Mutation SNP C C T rs200034628 TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SYT9 NM_175733 exon2 c.C425T p.T142M CCCAGACGGGGAT . 65.0 23.0 70.0 0.0 C|0.999;T|0.000 155 TBX22 50945 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 79282219 79282219 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TBX22 NM_016954 exon5 c.T650C p.M217T AATCCATGCATAA . 63.0 44.0 71.0 0.0 . 628 TEX14 56155 hgsc.bcm.edu;bcgsc.ca 37 17 56692692 56692692 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TEX14 NM_001201457 exon8 c.G800A p.G267E CTGCTCCCATTCC . 124.0 5.0 93.0 0.0 . 810 THAP1 55145 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 42693397 42693397 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . THAP1 NM_018105 exon3 c.G350T p.G117V AGTAATCCAATAG . 124.0 65.0 135.0 0.0 . 90 THSD7A 221981 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 11446083 11446083 + Missense_Mutation SNP C C G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . THSD7A NM_015204 exon21 c.G4081C p.G1361R TGGTCCCTTCTCC . 242.0 84.0 193.0 0.0 . 71 TIGD7 91151 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 16 3349414 3349414 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TIGD7 NM_033208 exon2 c.A1201G p.N401D GAAGATTTTCCCA . 220.0 81.0 243.0 0.0 . 90 TLL1 7092 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 4 167020635 167020635 + Missense_Mutation SNP C C G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TLL1 NM_012464 exon20 c.C2863G p.L955V GATGGTCTTGATT . 290.0 100.0 269.0 0.0 . 158 TMEM132B 114795 ucsc.edu;bcgsc.ca;mdanderson.org 37 12 126138497 126138497 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TMEM132B NM_052907 exon9 c.A2478G p.R826R GGAGAGAGCAGTC . 176.0 57.0 92.0 0.0 . 185 TNRC6A 27327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 24815534 24815534 + Missense_Mutation SNP A A G rs146427035 byfrequency TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TNRC6A NM_014494 exon12 c.A3731G p.H1244R ATAAACATAGCCT . 54.0 22.0 88.0 0.0 A|0.995;G|0.005 92 TNRC6B 23112 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 40708594 40708594 + Silent SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TNRC6B NM_001162501 exon18 c.G4521T p.G1507G GCTGGGGGGTACA . 116.0 46.0 123.0 0.0 . 22 TPCN2 219931 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 68835002 68835002 + Missense_Mutation SNP C C G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TPCN2 NM_139075 exon8 c.C758G p.T253S GGCTGACCTACTT . 56.0 10.0 46.0 0.0 . 90 TTC17 55761 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 11 43411338 43411338 + Missense_Mutation SNP G G C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TTC17 NM_018259 exon3 c.G386C p.G129A ATGATGGCACATA . 203.0 58.0 219.0 0.0 . 95 UNC13C 440279 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 15 54590036 54590036 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . UNC13C NM_001080534 exon10 c.C4016A p.S1339Y CTGTATCTGGGGC . 307.0 104.0 341.0 0.0 . 51 VAMP2 6844 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 17 8064968 8064968 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . VAMP2 NM_014232 exon3 c.C240T p.S80S GGCTGCGCTTGTT . 131.0 13.0 140.0 0.0 . 90 WDR87 83889 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 19 38378513 38378513 + Missense_Mutation SNP T T G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_031951 exon6 c.A5681C p.K1894T GTCAGCTTCTCCT . 209.0 83.0 207.0 0.0 . . XIRP2 129446 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 168104144 168104144 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . XIRP2 NM_152381 exon9 c.G6242A p.R2081K TGAGCAGACAATT . 158.0 71.0 155.0 0.0 . 104 ZFP28 140612 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 57066068 57066068 + Missense_Mutation SNP C C G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZFP28 NM_020828 exon8 c.C1914G p.I638M GAGAATCCATACT . 110.0 31.0 77.0 0.0 . 91 ZFP36 7538 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 39899237 39899239 + In_Frame_Del DEL CTC CTC - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 CTC CTC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZFP36 NM_003407 exon2 c.897_899del p.299_300del GGGGGGCTCTGAC . 98.0 21.0 84.0 0.0 . 227 ZNF24 7572 hgsc.bcm.edu;ucsc.edu 37 18 32920512 32920512 + Nonsense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF24 NM_006965 exon2 c.G103T p.E35X CCTCTTCGCCATC . 59.0 20.0 45.0 0.0 . 90 ZNF24 7572 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 18 32920511 32920511 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF24 NM_006965 exon2 c.A104G p.E35G CCCTCTTCGCCAT . 61.0 22.0 46.0 0.0 . 90 ZNF322 79692 hgsc.bcm.edu;bcgsc.ca 37 6 26638586 26638586 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_001242797 exon5 c.A196G p.T66A CCCCAGTATGGGT . 397.0 92.0 396.0 0.0 . . ZNF394 84124 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 7 99091412 99091412 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF394 NM_032164 exon3 c.A1426G p.K476E AGCTCTTCTCGCA . 222.0 69.0 190.0 0.0 . 90 ZNF395 55893 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 8 28210089 28210089 + Splice_Site SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF395 NM_018660 exon7 c.920+1G>A . CACATACCCCAGA . 108.0 30.0 52.0 0.0 . 90