Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ADARB2 105 broad.mit.edu;mdanderson.org 37 10 1779280 1779280 + Missense_Mutation SNP G G C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . ADARB2 NM_018702 exon1 c.C65G p.S22C CTCTTGGACTTGC . 11.0 5.0 14.0 0.0 . 153 ALK 238 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 29940532 29940532 + Missense_Mutation SNP C C A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . ALK NM_004304 exon2 c.G699T p.M233I AGAAGGCATGTTT . 205.0 58.0 213.0 1.0 . 3833 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 21251347 21251347 + Missense_Mutation SNP C C A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . APOB NM_000384 exon13 c.G1681T p.A561S GATAGGCAGCCAG . 82.0 35.0 86.0 0.0 . 175 BAI3 577 broad.mit.edu;bcgsc.ca 37 6 70034870 70034870 + Missense_Mutation SNP T T A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . BAI3 NM_001704 exon21 c.T2921A p.I974N GAAAAATTAGGAC . 85.0 5.0 76.0 0.0 . 1148 BICD1 636 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 32369238 32369238 + Nonsense_Mutation SNP G G T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . BICD1 NM_001714 exon2 c.G271T p.E91X ACTCGGGAGGAAA . 79.0 27.0 98.0 0.0 . 153 C16orf87 388272 broad.mit.edu;bcgsc.ca 37 16 46865061 46865061 + Missense_Mutation SNP T T C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . C16orf87 NM_001001436 exon1 c.A1G p.M1V CAGACATGCTCCT . 11.0 6.0 19.0 0.0 . 90 C19orf21 126353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 758170 758170 + Silent SNP C C T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . C19orf21 NM_173481 exon2 c.C1224T p.A408A TGCGGCCGACCCA . 49.0 17.0 36.0 0.0 . 91 C1orf43 25912 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 154184948 154184948 + Missense_Mutation SNP G G A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . C1orf43 NM_001098616 exon5 c.C493T p.R165C CATAGCGGGCTGT . 95.0 4.0 88.0 0.0 . 90 C2orf43 60526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 20939926 20939926 + Missense_Mutation SNP T T C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . C2orf43 NM_021925 exon5 c.A508G p.M170V CAGACATTCGTTC . 169.0 106.0 110.0 0.0 . 90 C3AR1 719 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 8212610 8212610 + Missense_Mutation SNP T T C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . C3AR1 NM_004054 exon2 c.A172G p.T58A AAATTGTGTTCAC . 94.0 37.0 85.0 0.0 . 227 CALML6 163688 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 1847135 1847135 + Silent SNP T T C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . CALML6 NM_138705 exon2 c.T39C p.C13C CTGGTGTCACCAC . 43.0 4.0 48.0 0.0 . 90 CARD8 22900 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 48718639 48718639 + Missense_Mutation SNP C C A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . CARD8 NM_001184900 exon10 c.G1306T p.D436Y GGAGATCCACTAC . 72.0 26.0 72.0 0.0 . 227 CCDC168 643677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 13 103385109 103385109 + Nonsense_Mutation SNP C C A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . . NM_001146197 exon4 c.G17938T p.E5980X TCTCTTCTTGCAG . 170.0 67.0 154.0 0.0 . . CDH5 1003 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 66434787 66434787 + Missense_Mutation SNP A A G novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . CDH5 NM_001795 exon11 c.A1705G p.S569G GGCACCAGCACGC . 53.0 20.0 61.0 1.0 . 525 CEACAM6 4680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 42266039 42266039 + Missense_Mutation SNP T T C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . CEACAM6 NM_002483 exon4 c.T866C p.I289T CCAACATCACTGT . 150.0 56.0 138.0 0.0 . 91 CRB1 23418 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 197446818 197446818 + Missense_Mutation SNP A A G rs111761880 bycluster;byfrequency TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . CRB1 NM_201253 exon12 c.A4030G p.I1344V TCCGACATTTTCA . 145.0 68.0 144.0 0.0 A|0.999;G|0.001 161 DEPDC7 91614 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 33037511 33037511 + Missense_Mutation SNP G G A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . DEPDC7 NM_001077242 exon1 c.G10A p.V4M GCCACCGTGCAGG . 58.0 20.0 97.0 0.0 . 92 DHX57 90957 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 39088480 39088480 + Nonsense_Mutation SNP G G A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . DHX57 NM_198963 exon5 c.C1072T p.R358X AAAATCGAATTTC . 114.0 41.0 85.0 0.0 . 228 DMBT1 1755 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 124390621 124390621 + Missense_Mutation SNP G G C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . DMBT1 NM_007329 exon46 c.G5783C p.G1928A AGCTAGGGTGTGG . 124.0 35.0 136.0 0.0 . 494 DNAH17 8632 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 76462860 76462860 + Silent SNP C C A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . DNAH17 NM_173628 exon56 c.G8817T p.R2939R TCGTACCCGCAGC . 41.0 21.0 37.0 0.0 . 142 DNAJC1 64215 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 10 22207780 22207780 + Nonsense_Mutation SNP C C T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . DNAJC1 NM_022365 exon6 c.G657A p.W219X ATCATGCCACTGT . 66.0 30.0 49.0 0.0 . 226 DPCR1 135656 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 30918729 30918729 + Missense_Mutation SNP G G A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . DPCR1 NM_080870 exon2 c.G2488A p.A830T AGGACAGCCAATG . 105.0 33.0 91.0 0.0 . 90 DUSP14 11072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 35872856 35872856 + Missense_Mutation SNP A A G novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . DUSP14 NM_007026 exon3 c.A482G p.Y161C TAGACTACGAGCG . 31.0 12.0 36.0 0.0 . 226 E2F3 1871 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 20481646 20481646 + Missense_Mutation SNP G G A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . E2F3 NM_001949 exon3 c.G715A p.V239I AACAACGTCCAAT . 93.0 33.0 84.0 0.0 . 414 EMC1 23065 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 19568867 19568867 + Missense_Mutation SNP G G C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . . NM_001271427 exon5 c.C481G p.L161V ACTTGAGGTGCCC . 56.0 27.0 70.0 1.0 . . EP400 57634 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 132471242 132471242 + Missense_Mutation SNP C C T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . EP400 NM_015409 exon6 c.C2113T p.R705W ACTTCCCGGACCC . 40.0 14.0 41.0 0.0 . 520 FAHD2A 51011 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 96076720 96076720 + Missense_Mutation SNP T T C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . FAHD2A NM_016044 exon5 c.T631C p.F211L AAAACCTTCGACA . 130.0 57.0 138.0 1.0 . 91 FGGY 55277 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 60223627 60223627 + Missense_Mutation SNP G G T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . FGGY NM_001113411 exon16 c.G1609T p.V537F AGCAAAGTTGGGA . 71.0 27.0 61.0 0.0 . 69 FLNB 2317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 57994556 57994556 + Missense_Mutation SNP C C G novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . FLNB NM_001457 exon1 c.C265G p.R89G CTGGACCGTGAGA . 88.0 44.0 63.0 0.0 . 593 GAST 2520 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39872101 39872101 + Missense_Mutation SNP C C T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . GAST NM_000805 exon3 c.C283T p.R95C GGCCGCCGCAGTG . 59.0 22.0 63.0 0.0 . 22 GCN1L1 10985 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 120578768 120578768 + Missense_Mutation SNP C C A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . GCN1L1 NM_006836 exon45 c.G5889T p.E1963D GATGATCTCGGGG . 71.0 30.0 58.0 0.0 . 94 GJB1 2705 ucsc.edu;mdanderson.org 37 X 70444424 70444424 + RNA SNP C C T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . GJB1 . . . . ACCAGGCAACCTC . 91.0 40.0 114.0 0.0 . 193 GNG12 55970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 68171260 68171260 + Splice_Site SNP C C G novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . GNG12 NM_018841 exon5 c.94-1G>C . CGAAACCTGACAT . 142.0 33.0 79.0 0.0 . 227 GPRC5B 51704 broad.mit.edu;bcgsc.ca 37 16 19883581 19883581 + Missense_Mutation SNP T T C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . GPRC5B NM_016235 exon2 c.A587G p.E196G ATGGGCTCGTAGG . 108.0 6.0 95.0 2.0 . 523 GRID2 2895 broad.mit.edu;bcgsc.ca 37 4 94436382 94436382 + Silent SNP T T C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . GRID2 NM_001510 exon13 c.T2013C p.L671L GGACCTTTCCAAG . 49.0 4.0 74.0 0.0 . 159 HTR1A 3350 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 63256470 63256470 + Silent SNP C C T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . HTR1A NM_000524 exon1 c.G1077A p.L359L GAAGGGCAGCCAG . 108.0 53.0 97.0 1.0 . 94 IDUA 3425 broad.mit.edu;bcgsc.ca 37 4 995816 995816 + Missense_Mutation SNP C C T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . IDUA NM_000203 exon7 c.C839T p.A280V TCGTCGCGCAGCA . 13.0 4.0 17.0 0.0 . 91 IFNG 3458 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 68553297 68553297 + Missense_Mutation SNP G G C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . IFNG NM_000619 exon1 c.C99G p.N33K CTTAAGGTTTTCT . 111.0 39.0 124.0 0.0 . 90 IGSF9B 22997 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 133815979 133815979 + Missense_Mutation SNP G G A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . IGSF9B NM_014987 exon2 c.C239T p.P80L ACGTGCGGCGGGT . 72.0 31.0 54.0 0.0 . 68 IL21R 50615 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 27460191 27460191 + Silent SNP C C T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . IL21R NM_181079 exon10 c.C1270T p.L424L CCAGCCCTGGACC . 91.0 39.0 48.0 0.0 . 660 IL21R 50615 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 27460214 27460214 + Missense_Mutation SNP G G T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . IL21R NM_181079 exon10 c.G1293T p.E431D CCTGGAGCCCAGC . 84.0 30.0 45.0 0.0 . 660 JMJD8 339123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 733364 733364 + Missense_Mutation SNP C C T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . JMJD8 NM_001005920 exon6 c.G532A p.G178S GCAGGCCAAATGG . 87.0 54.0 80.0 0.0 . 67 KCNA2 3737 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 111147255 111147255 + Silent SNP G G T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . KCNA2 NM_001204269 exon3 c.C150A p.T50T GGCTAAGGTCTTT . 102.0 46.0 105.0 0.0 . 91 KCNS3 3790 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 18113077 18113077 + Missense_Mutation SNP G G T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . KCNS3 NM_002252 exon3 c.G802T p.A268S TTCTATGCCACGT . 153.0 60.0 140.0 0.0 . 94 KEL 3792 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 142651031 142651031 + Missense_Mutation SNP C C T rs191311545 TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . KEL NM_000420 exon9 c.G937A p.A313T CGATGGCGGGGGC . 53.0 29.0 36.0 0.0 C|0.999;T|0.001 93 KLRC4-KLRK1 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 10525808 10525808 + Nonsense_Mutation SNP T T A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . . NM_001199805 exon13 c.A556T p.K186X CTCCCTTCTGCAT . 146.0 58.0 149.0 0.0 . . LCA5L 150082 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 40794906 40794907 + Frame_Shift_Ins INS - - T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . LCA5L NM_152505 exon5 c.833_834insA p.I278fs ACCTGTATTTTTT . 239.0 74.0 174.0 0.0 . 22 LRIG1 26018 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 66502014 66502014 + Missense_Mutation SNP C C T rs149854215 TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . LRIG1 NM_015541 exon3 c.G334A p.A112T AAGCAGCGCCCAG . 59.0 27.0 56.0 0.0 C|0.999;T|0.000 230 M1AP 130951 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 74785860 74785860 + Missense_Mutation SNP C C T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . . NM_138804 exon11 c.G1576A p.D526N AGGGATCCTTCTC . 123.0 64.0 114.0 0.0 . . MIR583 693168 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 95414907 95414907 + RNA SNP C C T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . . . . . . GACCTACCTCTTT . 90.0 40.0 82.0 0.0 . . MIS18BP1 55320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 45700393 45700393 + Silent SNP A A G novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . MIS18BP1 NM_018353 exon8 c.T1545C p.D515D AGCAGTATCTGTT . 251.0 101.0 263.0 0.0 . 90 MNDA 4332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158812126 158812126 + Silent SNP T T C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . MNDA NM_002432 exon2 c.T183C p.C61C TGCCTGTCTAGAC . 153.0 66.0 137.0 0.0 . 94 MRPL53 116540 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 74699318 74699318 + Silent SNP G G C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . MRPL53 NM_053050 exon3 c.C267G p.A89A GGCGAAGGCGGTG . 90.0 37.0 87.0 0.0 . 90 NEK9 91754 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 75580093 75580093 + Missense_Mutation SNP C C T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . NEK9 NM_033116 exon8 c.G887A p.R296K GTAGGTCTCTGCT . 159.0 28.0 97.0 0.0 . 359 NGLY1 55768 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 25805746 25805746 + Silent SNP A A T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . NGLY1 NM_018297 exon3 c.T303A p.I101I GTCACGAATTTTT . 216.0 91.0 191.0 0.0 . 135 NRXN3 9369 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 80328058 80328058 + Silent SNP C C A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . NRXN3 NM_004796 exon17 c.C2937A p.I979I GGTGATCCGGGAG . 60.0 30.0 56.0 0.0 . 587 OR51E1 143503 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 4674237 4674237 + Missense_Mutation SNP C C T rs137885627 TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . OR51E1 NM_152430 exon2 c.C481T p.P161S ATGGCACCCCTTC . 70.0 29.0 96.0 0.0 C|0.999;T|0.000 114 OR56B4 196335 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 6129479 6129479 + Missense_Mutation SNP G G T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . OR56B4 NM_001005181 exon1 c.G471T p.R157S GCTCAGGAATGGC . 110.0 47.0 81.0 0.0 . 68 PCDHGA5 56110 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140745170 140745170 + Missense_Mutation SNP A A G novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . PCDHGA5 NM_032054 exon1 c.A1273G p.M425V ACCGTCATGGACC . 61.0 29.0 61.0 1.0 . 35 PDE4DIP 9659 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 144912287 144912287 + Missense_Mutation SNP G G A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . PDE4DIP NM_001002811 exon11 c.C2477T p.A826V TTCTCTGCAGCAG . 189.0 41.0 133.0 0.0 . 663 PIK3C2B 5287 hgsc.bcm.edu;bcgsc.ca 37 1 204394045 204394058 + Frame_Shift_Del DEL GCTCTCGCAGGCGG GCTCTCGCAGGCGG - novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 GCTCTCGCAGGCGG GCTCTCGCAGGCGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . PIK3C2B NM_002646 exon34 c.4827_4840del p.1609_1614del GGTCCAGCTCTCG . 76.0 32.0 77.0 1.0 . 1310 PLA2G4F 255189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 42437866 42437866 + Missense_Mutation SNP C C T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . PLA2G4F NM_213600 exon16 c.G1687A p.A563T CAAAGGCGCTGCC . 57.0 29.0 50.0 0.0 . 94 PPP4R4 57718 hgsc.bcm.edu;bcgsc.ca 37 14 94697004 94697004 + Silent SNP G G A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . PPP4R4 NM_058237 exon4 c.G375A p.V125V ATCAGTGTCAATT . 82.0 5.0 64.0 0.0 . 94 PRDM2 7799 broad.mit.edu;mdanderson.org 37 1 14075915 14075915 + Missense_Mutation SNP A A G novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . PRDM2 NM_015866 exon6 c.A444G p.I148M TGAGATAGCAGCT . 11.0 6.0 17.0 0.0 . 116 PYCARD 29108 broad.mit.edu;ucsc.edu;mdanderson.org 37 16 31212988 31212988 + Nonsense_Mutation SNP C C T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . PYCARD NM_013258 exon3 c.G506A p.W169X CAGTTCCAGGCTG . 26.0 6.0 30.0 0.0 . 651 RASD1 51655 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 17398678 17398678 + Missense_Mutation SNP G G A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . RASD1 NM_016084 exon2 c.C607T p.P203S GGTCTGGGCTCAT . 16.0 14.0 22.0 0.0 . 659 RFPL2 10739 hgsc.bcm.edu;bcgsc.ca 37 22 32588963 32588963 + Missense_Mutation SNP G G A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . RFPL2 NM_001098527 exon4 c.C482T p.A161V TGGGAAGCCAGCC . 156.0 7.0 125.0 0.0 . 91 RGPD8 727851 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 113147588 113147588 + Silent SNP A A C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . . NM_001164463 exon20 c.T2934G p.T978T TCCTGAAGTTGAT . 668.0 43.0 594.0 0.0 . . RSC1A1 6248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 15986764 15986764 + Missense_Mutation SNP C C A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . RSC1A1 NM_006511 exon1 c.C401A p.S134Y GTTTATCTGTCAC . 134.0 65.0 128.0 0.0 . 91 RUFY4 285180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 218940360 218940360 + Missense_Mutation SNP C C T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . RUFY4 NM_198483 exon9 c.C1145T p.T382I ACGCAACAAAGGA . 149.0 76.0 77.0 0.0 . 46 RYR2 6262 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 237758830 237758830 + Missense_Mutation SNP C C T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . RYR2 NM_001035 exon34 c.C4469T p.A1490V TATGTGCGGGTGA . 130.0 61.0 126.0 1.0 . 158 SGSM1 129049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 25275471 25275471 + Silent SNP C C A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . SGSM1 NM_133454 exon15 c.C1638A p.I546I CCAGATCCTCTCC . 90.0 44.0 84.0 0.0 . 27 SMARCA1 6594 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 X 128641995 128641995 + Nonsense_Mutation SNP T T A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . SMARCA1 NM_139035 exon7 c.A889T p.K297X CAGATTTTTCTTT . 349.0 139.0 362.0 1.0 . 230 SOGA3 387104 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 127796693 127796693 + Silent SNP G G A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . . NM_001012279 exon6 c.C2478T p.G826G GGTCTTGCCCAGG . 26.0 10.0 24.0 0.0 . . SPTBN1 6711 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 54859819 54859819 + Silent SNP T T C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . SPTBN1 NM_003128 exon17 c.T3681C p.A1227A CAATGCTGTGGTG . 141.0 54.0 96.0 0.0 . 140 STIM1 6786 broad.mit.edu;bcgsc.ca 37 11 4091372 4091372 + Missense_Mutation SNP A A G novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . STIM1 NM_003156 exon6 c.A730G p.M244V AAGAAGATGATGA . 122.0 5.0 116.0 0.0 . 91 TAOK3 51347 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 118639247 118639247 + Silent SNP G G T novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . TAOK3 NM_016281 exon12 c.C841A p.R281R GTGGCCGGTCTCG . 115.0 40.0 115.0 0.0 . 933 THSD7A 221981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 11676308 11676308 + Missense_Mutation SNP C C G novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . THSD7A NM_015204 exon2 c.G471C p.E157D CGCTATCTCCCTC . 101.0 34.0 82.0 0.0 . 71 TMEM100 55273 broad.mit.edu;bcgsc.ca 37 17 53798239 53798239 + Missense_Mutation SNP A A G novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . TMEM100 NM_001099640 exon4 c.T193C p.F65L CGATGAAGACAAC . 73.0 4.0 80.0 0.0 . 68 TPCN1 53373 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 113704076 113704076 + Missense_Mutation SNP T T C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . TPCN1 NM_001143819 exon5 c.T545C p.L182P TCTACCTGATGGA . 60.0 26.0 45.0 0.0 . 93 TSHZ1 10194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 72998476 72998476 + Missense_Mutation SNP G G A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . TSHZ1 NM_005786 exon2 c.G979A p.A327T ATGGCCGCAGAGG . 79.0 34.0 79.0 0.0 . 90 UBA6 55236 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 68539451 68539451 + Missense_Mutation SNP G G C novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . UBA6 NM_018227 exon7 c.C510G p.I170M GTCATTGATCTTC . 82.0 38.0 90.0 1.0 . 90 ZNF132 7691 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 58944869 58944870 + Frame_Shift_Del DEL CT CT - novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . ZNF132 NM_003433 exon3 c.1941_1942del p.647_648del TGTGAACTCTCTG . 76.0 30.0 69.0 0.0 . 92 ZNF385C 201181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 40179065 40179065 + Silent SNP G G T rs71373480 alternate_allele TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . ZNF385C NM_001242704 exon8 c.C1125A p.I375I AGCACAGATGGCA . 90.0 39.0 82.0 0.0 G|0.500;A|0.500 22 ZNF534 147658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 52938382 52938382 + Missense_Mutation SNP G G A novel TCGA-DD-A3A5-01A-11D-A22F-10 TCGA-DD-A3A5-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9d536aaa-3e77-409a-a97c-a0e525c3a267 634467ec-6024-4df4-9b0a-399177ac8ba2 . ZNF534 NM_001143939 exon3 c.G230A p.R77K AAAAGAGAGATCC . 104.0 44.0 143.0 0.0 . 68