Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA8	10351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66920897	66920897	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ABCA8	NM_007168	exon10	c.T1387G	p.F463V	CATGAAATGAAGG	.	92.0	32.0	69.0	0.0	.	93
ADI1	55256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	3504718	3504718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ADI1	NM_018269	exon3	c.G287T	p.R96L	ATGTAGCGGATCT	.	66.0	32.0	62.0	0.0	.	91
AHNAK2	113146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105414676	105414676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	AHNAK2	NM_138420	exon7	c.C7112T	p.P2371L	GCGGAAGGGGGCT	.	104.0	34.0	87.0	0.0	.	47
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91936908	91936908	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ANKIB1	NM_019004	exon3	c.G424C	p.D142H	GCTGTTGATAACA	.	49.0	22.0	38.0	0.0	.	432
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73990739	73990739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ANKRD17	NM_032217	exon18	c.A3383G	p.H1128R	CCAACATGACCAG	.	115.0	43.0	114.0	0.0	.	234
ANKRD18B	441459	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33548483	33548483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_001244752	exon9	c.A1508G	p.D503G	CAAGAGATGCTCT	.	170.0	36.0	162.0	1.0	.	.
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	112111380	112111380	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	APC	NM_001127511	exon4	c.C507G	p.Y169X	GTATTACGCTCAA	.	88.0	61.0	132.0	0.0	.	12026
ARHGEF10L	55160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17942680	17942680	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ARHGEF10L	NM_018125	exon9	c.A818G	p.H273R	TCCTGCACAGGAA	.	139.0	51.0	98.0	0.0	.	292
ASMT	438	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	1752180	1752180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ASMT	NM_001171038	exon7	c.G784A	p.E262K	TTCCAGGAAGGTG	.	483.0	106.0	425.0	2.0	.	40
ATAD2	29028	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	124382175	124382175	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ATAD2	NM_014109	exon7	c.G817C	p.D273H	CATCATCATCATC	.	315.0	18.0	134.0	0.0	.	92
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	26026303	26026303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ATP10A	NM_024490	exon2	c.T517C	p.C173R	CGTTGCAGCGAAG	.	55.0	11.0	86.0	0.0	.	139
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142275233	142275233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ATR	NM_001184	exon9	c.G2070C	p.K690N	AAGAATCTTGGGA	.	134.0	43.0	146.0	0.0	.	1139
ATXN2	6311	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	111951212	111951212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ATXN2	NM_002973	exon11	c.G1987A	p.V663I	TTGCTACTGGAGG	.	142.0	6.0	136.0	0.0	.	136
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	70766253	70766253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	BDP1	NM_018429	exon7	c.G951T	p.M317I	CAGCATGGTAGGA	.	302.0	66.0	427.0	0.0	.	92
BMP2K	55589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	79832589	79832589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	BMP2K	NM_198892	exon16	c.C2888T	p.T963M	AAATAACGGGGAG	.	289.0	27.0	239.0	0.0	.	383
BTRC	8945	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103310572	103310573	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	BTRC	NM_033637	exon14	c.1773_1774insC	p.E591fs	AGCTGAACCCCCC	.	167.0	58.0	142.0	0.0	.	659
C2orf48	348738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10350626	10350626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	C2orf48	NM_182626	exon3	c.C383T	p.A128V	AGAGGGCGCTGGG	.	114.0	58.0	98.0	0.0	.	90
CA4	762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	58233977	58233977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CA4	NM_000717	exon3	c.G169A	p.V57I	AACATCGTCACCA	.	74.0	20.0	62.0	0.0	.	226
CACNA1F	778	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49062154	49062154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CACNA1F	NM_005183	exon47	c.C5625A	p.F1875L	ACAGGTGAAGGTG	.	78.0	43.0	64.0	1.0	.	176
CDH1	999	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68845609	68845609	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CDH1	NM_004360	exon7	c.A855G	p.T285T	GGTCACAGCCACA	.	58.0	9.0	48.0	0.0	.	3377
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85970872	85970872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CDHR1	NM_001171971	exon13	c.C1436A	p.A479D	ACGTTGCCAGGAT	.	58.0	20.0	41.0	0.0	.	91
CEP135	9662	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	56831901	56831901	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CEP135	NM_025009	exon8	c.A920C	p.N307T	TCGTTAATTTAAG	.	157.0	12.0	139.0	1.0	.	94
CEP97	79598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101445524	101445524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CEP97	NM_024548	exon2	c.G130T	p.D44Y	ATTCTGGATAAAA	.	77.0	18.0	61.0	0.0	.	70
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	40049297	40049297	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CHD6	NM_032221	exon31	c.A5978T	p.H1993L	AGCTCATGCTTCA	.	186.0	12.0	186.0	0.0	.	238
COL4A5	1287	broad.mit.edu;bcgsc.ca	37	X	107910381	107910381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	COL4A5	NM_000495	exon40	c.A3572G	p.N1191S	TTGGAAACCCAGG	.	149.0	6.0	111.0	1.0	.	133
CPZ	8532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	8621092	8621092	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CPZ	NM_001014447	exon11	c.C1707T	p.A569A	CCCCGCCCGGATG	.	193.0	76.0	172.0	0.0	.	93
CREB3L3	84699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4159733	4159733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CREB3L3	NM_001271997	exon4	c.A530G	p.N177S	GATGCAATCTCAC	.	14.0	6.0	25.0	0.0	.	92
CREBBP	1387	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3807292	3807292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CREBBP	NM_004380	exon19	c.A3695G	p.N1232S	TACCTATTCTGAT	.	141.0	52.0	163.0	1.0	.	1807
CSPG5	10675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47618819	47618819	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CSPG5	NM_006574	exon2	c.G697C	p.G233R	AGGTTCCTGGTGA	.	85.0	26.0	67.0	0.0	.	91
CTNNA3	29119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	69299302	69299302	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	CTNNA3	NM_001127384	exon4	c.G418C	p.D140H	TCATGTCCGCAAG	.	186.0	18.0	135.0	0.0	.	234
DAGLA	747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61496465	61496465	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DAGLA	NM_006133	exon8	c.C834A	p.L278L	GTACCTCGACCTC	.	167.0	18.0	143.0	0.0	.	92
DCK	1633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71889378	71889378	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DCK	NM_000788	exon4	c.A504G	p.Q168Q	TGGCCAAAGCCTT	.	229.0	22.0	170.0	0.0	.	116
DDX56	54606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44609640	44609640	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DDX56	NM_019082	exon8	c.T1098A	p.P366P	GGCCTCAGGGGTT	.	64.0	20.0	75.0	0.0	.	227
DENND2C	163259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115143496	115143496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DENND2C	NM_001256404	exon14	c.C1901A	p.P634Q	GGAGCTGGGAAAG	.	95.0	27.0	112.0	0.0	.	229
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84832627	84832627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DNAH6	NM_001370	exon20	c.G3085A	p.E1029K	AAGGTGGAGGACT	.	132.0	40.0	122.0	0.0	.	69
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	97564053	97564053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DPYD	NM_000110	exon21	c.A2758G	p.T920A	TGATGGTAGGAAT	.	160.0	40.0	148.0	0.0	.	278
DUSP5	1847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112262621	112262621	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	DUSP5	NM_004419	exon2	c.T522C	p.Y174Y	AGCTTATGACCAG	.	104.0	40.0	93.0	0.0	.	659
EFHA2	286097	ucsc.edu;bcgsc.ca	37	8	16956032	16956032	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	EFHA2	NM_181723	exon9	c.A954G	p.T318T	TAACACAAGCCAA	.	38.0	4.0	53.0	0.0	.	91
EIF4E1B	253314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176070692	176070692	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_001099408	exon5	c.C253G	p.L85V	GACAACCTGCACC	.	83.0	42.0	73.0	0.0	.	.
ESM1	11082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54281083	54281083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ESM1	NM_001135604	exon1	c.G263T	p.G88V	TCCTCCCCATTAG	.	85.0	16.0	79.0	0.0	.	90
EYS	346007	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	65767615	65767615	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	EYS	NM_001142800	exon13	c.C2029T	p.Q677X	CACATTGCGTACC	.	224.0	61.0	145.0	1.0	.	660
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	64431532	64431532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	EYS	NM_001142800	exon43	c.C8395A	p.L2799I	CATCTAGATCCAG	.	330.0	35.0	229.0	0.0	.	660
FAM182A	284800	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	26063603	26063603	+	RNA	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	.	.	.	.	AGGAGCATGATGG	.	107.0	19.0	81.0	0.0	.	.
FAM227B	196951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49659729	49659729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_152647	exon13	c.A1187G	p.Y396C	AGATAATATAAAA	.	109.0	42.0	96.0	0.0	.	.
FAP	2191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	163029733	163029733	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	FAP	NM_004460	exon25	c.2035-2A>G	.	GAATTCTGGAAAA	.	205.0	66.0	173.0	0.0	.	93
FAP	2191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	163044766	163044766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	FAP	NM_004460	exon20	c.G1727T	p.G576V	GCTGTTCCTCGAC	.	160.0	61.0	113.0	0.0	.	93
FARP1	10160	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99099038	99099038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	FARP1	NM_005766	exon26	c.A3023G	p.Y1008C	TCTACTACTTCAG	.	82.0	30.0	74.0	1.0	.	290
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14784488	14784488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	FREM1	NM_144966	exon25	c.A4322G	p.Q1441R	TCGATCTGGCCAT	.	105.0	28.0	106.0	0.0	.	138
GAB4	128954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17443765	17443765	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GAB4	NM_001037814	exon10	c.C1583A	p.P528Q	ATGGATGGCTGAG	.	45.0	17.0	28.0	0.0	.	91
GBP2	2634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89583374	89583374	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GBP2	NM_004120	exon5	c.A511C	p.S171R	AAAAGCTCACAAA	.	263.0	109.0	260.0	0.0	.	91
GEM	2669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	95272587	95272587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GEM	NM_181702	exon2	c.A145G	p.T49A	CAGGGGTAGCAGA	.	164.0	13.0	49.0	0.0	.	659
GPR37	2861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	124386785	124386785	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GPR37	NM_005302	exon2	c.C1636G	p.P546A	GGACTGGGGTGAC	.	103.0	12.0	88.0	0.0	.	523
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66742812	66742812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GRIP1	NM_021150	exon24	c.C3218A	p.T1073N	GTATTAGTGGGTT	.	283.0	30.0	275.0	0.0	.	494
GUCY2F	2986	broad.mit.edu;bcgsc.ca	37	X	108684675	108684675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	GUCY2F	NM_001522	exon7	c.T1606C	p.S536P	CCTCTGAGGTAAT	.	94.0	4.0	59.0	0.0	.	540
HDAC8	55869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71788678	71788678	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	HDAC8	NM_018486	exon3	c.C221G	p.A74G	AGATAAGCATCAG	.	28.0	17.0	31.0	0.0	.	226
HELZ2	85441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62190680	62190680	+	Silent	SNP	G	G	A	rs141769251		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_001037335	exon20	c.C7869T	p.L2623L	GTCCAGGAGGCTA	.	61.0	19.0	45.0	0.0	G|1.000;A|0.000	.
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	160491064	160491064	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	IGF2R	NM_000876	exon31	c.C4417T	p.R1473X	ACCATCCGATTCA	.	39.0	5.0	66.0	0.0	.	118
IL20RB	53833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	136708320	136708320	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	IL20RB	NM_144717	exon4	c.T444C	p.D148D	CAAAGATGGCTTC	.	48.0	14.0	49.0	0.0	.	91
IPO4	79711	hgsc.bcm.edu;bcgsc.ca	37	14	24654743	24654743	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	IPO4	NM_024658	exon13	c.C1200T	p.C400C	GCCCTTGCACACA	.	59.0	29.0	42.0	0.0	.	226
IPO4	79711	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24654742	24654743	+	Nonsense_Mutation	INS	-	-	ACAC	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	IPO4	NM_024658	exon13	c.1201_1202insGTGT	p.K401_G402delinsVX	GGCCCTTGCACAC	.	59.0	27.0	44.0	0.0	.	226
ITGB1BP1	9270	broad.mit.edu;bcgsc.ca	37	2	9552533	9552533	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ITGB1BP1	NM_004763	exon4	c.A153G	p.G51G	GCTTTGTCCTGAA	.	40.0	4.0	36.0	0.0	.	130
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26568361	26568361	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ITPR2	NM_002223	exon51	c.C7181G	p.S2394C	ATAATAGAGCGGC	.	132.0	37.0	117.0	0.0	.	542
JPH1	56704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75233175	75233175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	JPH1	NM_020647	exon1	c.C348A	p.D116E	GTACCCGTCTTGC	.	59.0	9.0	26.0	0.0	.	91
KCNAB2	8514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6145274	6145274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	KCNAB2	NM_001199862	exon6	c.G391A	p.V131I	GAAGTGGTACTGG	.	141.0	52.0	84.0	0.0	.	514
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21464744	21464744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	LAMA3	NM_001127717	exon41	c.A5230G	p.T1744A	TTTGCCACTGGCT	.	204.0	30.0	169.0	0.0	.	100
LIMK2	3985	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31655931	31655931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	LIMK2	NM_005569	exon5	c.A419G	p.E140G	CCACAGAGTCTGT	.	29.0	10.0	22.0	1.0	.	548
LOXHD1	125336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	44109166	44109166	+	Silent	SNP	G	G	T	rs200819355	alternate_allele	TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_144612	exon29	c.C4504A	p.R1502R	TGGTCCGGTTCTC	.	227.0	18.0	172.0	0.0	.	.
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	39906750	39906750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MACF1	NM_012090	exon70	c.G12346A	p.A4116T	ATTTTTGCCTGTG	.	161.0	11.0	155.0	0.0	.	165
MEF2A	4205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	100211575	100211575	+	Missense_Mutation	SNP	C	C	A	rs1135561	alternate_allele	TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MEF2A	NM_001130926	exon4	c.C306A	p.D102E	TGCTGACGATTAC	.	181.0	66.0	188.0	1.0	.	455
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42866314	42866314	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MEGF8	NM_001271938	exon33	c.C5793T	p.C1931C	GACCTGCAGTGAG	.	40.0	15.0	19.0	0.0	.	23
MTMR1	8776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149905792	149905792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MTMR1	NM_003828	exon11	c.G1321T	p.G441C	AGCGACGGTTGGG	.	71.0	57.0	64.0	0.0	.	131
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9057572	9057572	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MUC16	NM_024690	exon3	c.C29874A	p.T9958T	TTTTTGGGTGGTG	.	266.0	108.0	280.0	0.0	.	566
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	10429161	10429161	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MYH2	NM_017534	exon31	c.A4220T	p.E1407V	TGTTCCTCAGCTG	.	109.0	9.0	102.0	0.0	.	194
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1926593	1926593	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	MYT1L	NM_015025	exon10	c.G948A	p.E316E	GCTCTCCTCCACC	.	164.0	45.0	179.0	0.0	.	95
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47037989	47037989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NBEAL2	NM_015175	exon16	c.G2380T	p.G794C	CGGTGGGGCAGCC	.	49.0	21.0	64.0	0.0	.	69
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50186244	50186244	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NCKAP5L	NM_001037806	exon12	c.G3777T	p.L1259L	CCTGGGCAGCCCC	.	59.0	21.0	61.0	0.0	.	68
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	115792014	115792014	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NDST4	NM_022569	exon7	c.G1629A	p.W543X	GTTGGTCCAGCTC	.	234.0	22.0	201.0	0.0	.	94
NDUFS8	4728	broad.mit.edu;bcgsc.ca	37	11	67799630	67799630	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NDUFS8	NM_002496	exon2	c.G12A	p.L4L	CTGCCTGACCACG	.	64.0	5.0	68.0	0.0	.	91
NES	10763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156641759	156641759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NES	NM_006617	exon4	c.C2221A	p.H741N	ATTTGTGATTCTC	.	267.0	144.0	133.0	0.0	.	520
NHSL1	57224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138752749	138752749	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NHSL1	NM_020464	exon5	c.T2745C	p.T915T	TCCTTCAGTAGAA	.	38.0	10.0	68.0	0.0	.	68
NMUR1	10316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	232392880	232392880	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NMUR1	NM_006056	exon2	c.G852A	p.R284R	CTGGAGCCTGCAG	.	73.0	29.0	60.0	0.0	.	523
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	149002507	149002507	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	NR3C2	NM_000901	exon9	c.C2943G	p.F981L	CCGGTGGAAGTAG	.	95.0	15.0	78.0	0.0	.	154
OGN	4969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95147921	95147921	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OGN	NM_033014	exon7	c.C878G	p.P293R	CCTATCGGTAATC	.	156.0	61.0	129.0	0.0	.	492
OR2M5	127059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248308490	248308490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR2M5	NM_001004690	exon1	c.T41C	p.L14P	TCATCCTCCTGGG	.	329.0	177.0	201.0	0.0	.	71
OR2Y1	134083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180166444	180166444	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR2Y1	NM_001001657	exon1	c.C615T	p.V205V	AGCCACGACTATG	.	162.0	21.0	95.0	0.0	.	68
OR5D18	219438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587787	55587787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR5D18	NM_001001952	exon1	c.A682G	p.K228E	ATCCTCAAGATGC	.	168.0	62.0	142.0	0.0	.	71
OR5L2	26338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55595156	55595156	+	Silent	SNP	G	G	T	rs144734181	byfrequency;alternate_allele	TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR5L2	NM_001004739	exon1	c.G462T	p.V154V	GACGGTGTGTTCT	.	231.0	87.0	198.0	0.0	G|0.999;C|0.001	69
OR9I1	219954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57886305	57886305	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	OR9I1	NM_001005211	exon1	c.T612A	p.N204K	CACAAAATTGCCA	.	93.0	20.0	88.0	0.0	.	69
ORC2	4999	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	201790570	201790570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ORC2	NM_006190	exon13	c.A1136G	p.K379R	TTAAATTTGTTTA	.	112.0	9.0	90.0	0.0	.	209
PAQR5	54852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69695986	69695986	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PAQR5	NM_001104554	exon9	c.T818A	p.L273H	CCATACTTCTGGA	.	74.0	26.0	86.0	0.0	.	70
PCDH7	5099	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30921951	30921951	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCDH7	NM_032457	exon2	c.G3351A	p.T1117T	GACCACGCCGGAT	.	95.0	41.0	72.0	2.0	.	229
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140347883	140347883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCDHAC2	NM_031883	exon1	c.G1532A	p.R511K	TGGAGAGGGAGAT	.	204.0	18.0	113.0	0.0	.	26
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82508658	82508658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCLO	NM_014510	exon10	c.T13649C	p.M4550T	CCTTCCATAAGCT	.	157.0	67.0	168.0	0.0	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82582751	82582751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PCLO	NM_014510	exon5	c.C7518A	p.S2506R	AGGTTTGCTTGGC	.	88.0	13.0	91.0	0.0	.	29
PEX2	5828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77895811	77895811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PEX2	NM_000318	exon4	c.G604A	p.E202K	GAAATTCAGCAAA	.	67.0	16.0	43.0	0.0	.	91
PHGDH	26227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120266059	120266059	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PHGDH	NM_006623	exon3	c.G351C	p.L117L	GTGCCTGGCCAGG	.	122.0	50.0	113.0	0.0	.	91
PIGR	5284	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207103702	207103702	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PIGR	NM_002644	exon11	c.C2256T	p.T752T	GGCCACGGTGCTG	.	82.0	43.0	43.0	1.0	.	92
PIK3R5	23533	ucsc.edu;bcgsc.ca	37	17	8812422	8812422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PIK3R5	NM_001142633	exon3	c.T173C	p.L58P	TCAAGGAGGATAA	.	44.0	4.0	50.0	0.0	.	1146
POLR2G	5436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62533971	62533971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	POLR2G	NM_002696	exon8	c.G511T	p.V171L	GGGCTTGTAAGCT	.	122.0	7.0	133.0	0.0	.	90
PPIL1	51645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	36839559	36839559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PPIL1	NM_016059	exon2	c.A146G	p.N49S	GTGCCATTGTAGT	.	292.0	153.0	175.0	0.0	.	91
PPP1R15B	84919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204378958	204378958	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PPP1R15B	NM_032833	exon1	c.A1582C	p.S528R	GAAGGCTTCCAGA	.	124.0	69.0	90.0	0.0	.	652
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79320970	79320970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PRUNE2	NM_015225	exon8	c.G6220A	p.A2074T	TCTTAGCATCTAT	.	110.0	22.0	109.0	0.0	.	157
PSMB7	5695	broad.mit.edu;bcgsc.ca	37	9	127115964	127115964	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PSMB7	NM_002799	exon8	c.A747G	p.K249K	AGTCCCTTTCTCA	.	73.0	4.0	67.0	1.0	.	90
PSMD8	5714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38867031	38867031	+	Missense_Mutation	SNP	G	G	A	rs200403794		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PSMD8	NM_002812	exon3	c.G473A	p.R158H	TCCTACGCAAGGA	.	83.0	30.0	56.0	0.0	.	68
PTP4A3	11156	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	142441034	142441034	+	Missense_Mutation	SNP	C	C	A	rs145157893	alternate_allele	TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	PTP4A3	NM_032611	exon5	c.C412A	p.R138S	AAGCGCCGCGGAG	.	63.0	14.0	25.0	0.0	C|1.000;T|0.000	226
RAB20	55647	broad.mit.edu;mdanderson.org	37	13	111213727	111213727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RAB20	NM_017817	exon1	c.G140T	p.R47L	TAGGAGCGCCACT	.	27.0	7.0	19.0	0.0	.	227
RAPGEF3	10411	ucsc.edu;bcgsc.ca	37	12	48141580	48141580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RAPGEF3	NM_001098531	exon14	c.A1388G	p.Q463R	ATCTGCTGCCTCT	.	37.0	4.0	25.0	0.0	.	660
RBM25	58517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73576174	73576174	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RBM25	NM_021239	exon14	c.C1666G	p.P556A	GGGCATCCAGATC	.	154.0	39.0	138.0	0.0	.	91
RECQL5	9400	broad.mit.edu;ucsc.edu	37	17	73624403	73624403	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RECQL5	NM_004259	exon18	c.A2700C	p.Q900H	GGGGTCTTGAGCC	.	56.0	5.0	38.0	0.0	.	538
RECQL	5965	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21644631	21644631	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RECQL	NM_032941	exon4	c.T36C	p.D12D	TATAGAATCCAGT	.	122.0	32.0	103.0	1.0	.	228
REXO4	57109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	136272149	136272151	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	REXO4	NM_020385	exon8	c.1195_1197del	p.399_399del	CCACTCCTTCTTC	.	52.0	13.0	40.0	0.0	.	90
RNF26	79102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119206381	119206381	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RNF26	NM_032015	exon1	c.A549G	p.V183V	GGACGTAGTGGCT	.	106.0	38.0	111.0	0.0	.	227
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78666831	78666831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ROBO1	NM_002941	exon27	c.G4236T	p.E1412D	AGCATACTCTGCC	.	88.0	28.0	73.0	0.0	.	67
RPE65	6121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	68903877	68903877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RPE65	NM_000329	exon10	c.T1121C	p.I374T	TTGTCAATATTCA	.	112.0	11.0	89.0	0.0	.	91
RSRC1	51319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	157920990	157920990	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RSRC1	NM_016625	exon4	c.G450A	p.E150E	AAAGGAGAAGGAT	.	169.0	72.0	167.0	0.0	.	90
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	237586488	237586488	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	RYR2	NM_001035	exon12	c.A945T	p.L315L	CCTTCTACTCATG	.	429.0	27.0	243.0	0.0	.	158
SCN3A	6328	ucsc.edu;bcgsc.ca	37	2	165947496	165947496	+	Missense_Mutation	SNP	G	G	T	rs200457036		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SCN3A	NM_006922	exon28	c.C5167A	p.P1723T	CGGGTGGTGCACT	.	267.0	90.0	240.0	2.0	G|0.999;T|0.000	141
SDHB	6390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17354296	17354296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SDHB	NM_003000	exon5	c.C488T	p.S163F	TCCTGAGATTCAT	.	91.0	35.0	108.0	0.0	.	658
SEL1L	6400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81964803	81964803	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SEL1L	NM_005065	exon9	c.G927A	p.Q309Q	ACAACTCTGGAGG	.	67.0	17.0	74.0	0.0	.	227
SEPSECS	51091	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25156767	25156767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SEPSECS	NM_016955	exon5	c.A554C	p.E185A	ACAGGCTCAAAAC	.	63.0	8.0	49.0	0.0	.	90
SIRPB2	284759	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	1471995	1471995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SIRPB2	NM_001122962	exon1	c.C11T	p.T4M	GACATCGTGGAGC	.	90.0	8.0	81.0	0.0	.	226
SLC22A1	6580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160543147	160543147	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SLC22A1	NM_153187	exon1	c.G180A	p.Q60Q	GAGCCAGCGCTGT	.	66.0	13.0	63.0	0.0	.	90
SLC2A1	6513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43394606	43394606	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SLC2A1	NM_006516	exon8	c.G1071T	p.L357L	CACCAGCAGTGCT	.	55.0	19.0	42.0	0.0	.	94
SLFN14	342618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33875781	33875781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SLFN14	NM_001129820	exon4	c.C2216T	p.A739V	ACCTTCGCTATTT	.	125.0	50.0	110.0	0.0	.	1
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20535249	20535249	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SLIT2	NM_004787	exon18	c.A1743G	p.A581A	AGGAGCATCTGGT	.	505.0	188.0	449.0	0.0	.	521
SMC1B	27127	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	22	45809347	45809347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SMC1B	NM_148674	exon1	c.C102A	p.N34K	AGAGCCGTTGGGG	.	50.0	15.0	65.0	0.0	.	229
SMYD1	150572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	88396264	88396264	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SMYD1	NM_198274	exon6	c.G849C	p.L283L	AAAACTGAAGGAT	.	88.0	32.0	84.0	0.0	.	229
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16255449	16255449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	SPEN	NM_015001	exon11	c.A2714G	p.N905S	TTGATAATGACAC	.	101.0	25.0	93.0	0.0	.	298
TARSL2	123283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	102215816	102215816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TARSL2	NM_152334	exon13	c.A1775G	p.N592S	GCCTCATTCCACA	.	87.0	23.0	64.0	0.0	.	92
TBCCD1	55171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186281901	186281901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TBCCD1	NM_001134415	exon2	c.G218T	p.W73L	TAAAGCCACGCCA	.	61.0	24.0	51.0	0.0	.	108
TDRD7	23424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	100235830	100235830	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TDRD7	NM_014290	exon11	c.C2001T	p.L667L	GACACTCTACTGC	.	102.0	36.0	90.0	0.0	.	93
TFAP4	7023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4308230	4308230	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TFAP4	NM_003223	exon7	c.C843T	p.G281G	CTGGGTGCCCTCG	.	45.0	18.0	54.0	0.0	.	91
TJAP1	93643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43471363	43471363	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TJAP1	NM_001146016	exon10	c.G498C	p.E166D	GTAGGAGCGGTAC	.	85.0	42.0	78.0	0.0	.	90
TMEM128	85013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4248025	4248025	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TMEM128	NM_032927	exon2	c.T71G	p.L24R	ATATTAAGTCTTG	.	164.0	40.0	137.0	0.0	.	90
TMEM241	85019	ucsc.edu;bcgsc.ca	37	18	20953716	20953716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_032933	exon7	c.T395C	p.L132P	GCCAGGAGGAGGA	.	39.0	4.0	30.0	0.0	.	.
TOP2B	7155	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25668097	25668097	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TOP2B	NM_001068	exon18	c.C2163T	p.L721L	TGAGAAGAGAATC	.	142.0	29.0	141.0	1.0	.	273
TRIM37	4591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	57138433	57138433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TRIM37	NM_015294	exon12	c.G979T	p.V327L	GAAACACAGATAA	.	183.0	17.0	141.0	0.0	.	660
TRIM68	55128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4621894	4621894	+	Missense_Mutation	SNP	C	C	T	rs139399398		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TRIM68	NM_018073	exon7	c.G1070A	p.R357Q	TAGTGCCGGCCTG	.	118.0	53.0	118.0	0.0	C|1.000;T|0.000	91
TTC19	54902	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	15928399	15928399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TTC19	NM_017775	exon8	c.T745C	p.F249L	CTTCTGTTCTCCA	.	130.0	21.0	86.0	0.0	.	91
TTLL10	254173	ucsc.edu;bcgsc.ca	37	1	1118288	1118288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TTLL10	NM_001130045	exon11	c.T949C	p.S317P	ACAGCCTCCAACC	.	37.0	4.0	42.0	0.0	.	153
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179415808	179415808	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TTN	NM_001267550	exon336	c.A91450T	p.T30484S	GTCCTGTAACTGT	.	92.0	43.0	82.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179544137	179544137	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	TTN	NM_001267550	exon142	c.A33671T	p.E11224V	GGAACCTCAGGCA	.	216.0	27.0	167.0	0.0	.	636
VWA5B2	90113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	183959774	183959774	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_138345	exon19	c.G3677A	p.W1226X	GCCACTGGGACCA	.	23.0	15.0	27.0	0.0	.	.
WDR7	23335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54358487	54358487	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	WDR7	NM_052834	exon8	c.C758G	p.P253R	CAGGTCCTAGTGA	.	169.0	18.0	168.0	0.0	.	93
WDR78	79819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67356850	67356850	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	WDR78	NM_207014	exon4	c.G630A	p.L210L	ACTAGTCAATCTT	.	119.0	43.0	106.0	0.0	.	92
YIPF1	54432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	54332448	54332448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	YIPF1	NM_018982	exon8	c.A631G	p.I211V	TATAAATGAAGAG	.	99.0	14.0	68.0	0.0	.	154
YIPF7	285525	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	44637980	44637980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	NM_182592	exon3	c.C311T	p.P104L	ATGTAAGGAGATT	.	140.0	8.0	98.0	0.0	.	.
ZMYM5	9205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20426199	20426199	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZMYM5	NM_001039650	exon3	c.C122G	p.P41R	ACTAAAGGACAAG	.	100.0	34.0	75.0	0.0	.	90
ZNF185	7739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152085856	152085856	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF185	NM_001178109	exon5	c.C291T	p.S97S	AGACAGCTCTTCC	.	100.0	27.0	92.0	0.0	.	133
ZNF211	10520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58152126	58152126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF211	NM_001265597	exon5	c.G467T	p.G156V	TTTCTGGAGAAAG	.	170.0	18.0	153.0	0.0	.	92
ZNF292	23036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	87967391	87967391	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF292	NM_015021	exon8	c.G4044A	p.G1348G	CCGTGGGCGGGGC	.	86.0	52.0	143.0	0.0	.	72
ZNF564	163050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	12637749	12637749	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF564	NM_144976	exon4	c.A1173G	p.G391G	ATAAGGTCCATCT	.	99.0	8.0	82.0	0.0	.	91
ZNF606	80095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58489764	58489767	+	Frame_Shift_Del	DEL	TCTC	TCTC	-	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	TCTC	TCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF606	NM_025027	exon7	c.2281_2284del	p.761_762del	AGCGTTTCTCTCC	.	172.0	45.0	177.0	0.0	.	92
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71591324	71591324	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	ZNF638	NM_014497	exon5	c.A1659G	p.P553P	TAGTCCAAAATGC	.	142.0	58.0	113.0	0.0	.	94
LCP1	3936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	46730648	46730649	+	Missense_Mutation	DNP	TC	TC	CA	novel		TCGA-DD-A3A8-01A-11D-A22F-10	TCGA-DD-A3A8-11A-11D-A22F-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4cff8590-559e-4204-8635-96e11bfeda68	20e24e02-0caa-4e55-812b-b081b3bb03d8	.	.	.	.	.	p.D139C	CGACAATCAGGAT	.	196.0	23.0	164.0	0.0	.	.