Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2327903	2327903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	ABCA3	NM_001089	exon31	c.C4886T	p.A1629V	ACGAAGGCCTTGA	.	32.0	13.0	34.0	0.0	.	1015
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52440918	52440918	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	BAP1,uveal_tract,malignant_melanoma,+2	BAP1	NM_004656	exon8	c.T586G	p.W196G	CCCCCCAGGGCCC	.	98.0	54.0	135.0	0.0	.	1032
C16orf96	342346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4606689	4606689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	.	NM_001145011	exon1	c.G199A	p.A67T	GGAGACGCCCAGC	.	132.0	15.0	156.0	0.0	.	.
CEP164	22897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117263284	117263284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	CEP164	NM_001271933	exon18	c.G2443T	p.G815W	TGCCTTGGGCAAG	.	143.0	45.0	100.0	0.0	.	69
DMGDH	29958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78322295	78322295	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	DMGDH	NM_013391	exon13	c.C2142T	p.A714A	ATTCATGGCATAG	.	278.0	100.0	241.0	0.0	.	94
EML4	27436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	42488346	42488346	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	EML4	NM_019063	exon4	c.C424T	p.R142X	CAAATTCGAGCAT	.	54.0	9.0	37.0	0.0	.	3734
GEMIN8	54960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	14027050	14027050	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	GEMIN8	NM_017856	exon5	c.C711T	p.V237V	GGGGATGACCGGC	.	233.0	83.0	257.0	0.0	.	130
HCCS	3052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	11139831	11139831	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	HCCS	NM_001122608	exon7	c.G708A	p.K236K	CAACAAGGACTAC	.	205.0	70.0	226.0	0.0	.	226
HLA-E	3133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	30457628	30457628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	HLA-E	NM_005516	exon2	c.C190A	p.P64T	GCGAGTCCGAGGA	.	47.0	14.0	96.0	0.0	.	516
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	C	rs121913499	bycluster	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	IDH1,brain,glioma,+1	IDH1	NM_005896	exon4	c.C394G	p.R132G	CATGACGACCTAT	.	186.0	86.0	185.0	0.0	.	23522
IL18R1	8809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	103013028	103013028	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	IL18R1	NM_003855	exon10	c.C1308T	p.S436S	GAAAAGCCGAAGA	.	97.0	5.0	64.0	0.0	.	93
IRAK4	51135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	44176211	44176211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	IRAK4	NM_016123	exon9	c.T1043C	p.I348T	GCAGAATTGTGGG	.	89.0	37.0	76.0	0.0	.	1366
IVL	3713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152883644	152883644	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	IVL	NM_005547	exon2	c.G1371C	p.V457V	GCAGGTGGGGCAG	.	167.0	61.0	160.0	0.0	.	93
LHB	3972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49519408	49519408	+	Missense_Mutation	SNP	G	G	C	rs201749590	alternate_allele	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	LHB	NM_000894	exon3	c.C343G	p.R115G	TGCTGCGGCGGCA	.	54.0	21.0	70.0	0.0	G|0.999;A|0.000	90
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170029679	170029679	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	LRP2	NM_004525	exon57	c.C11070T	p.Y3690Y	GCAGCGGTAATTT	.	185.0	70.0	167.0	0.0	.	175
LRRD1	401387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91794266	91794266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	.	NM_001161528	exon1	c.A251G	p.N84S	TGAAGATTTTTCT	.	136.0	15.0	82.0	0.0	.	.
MAPK7	5598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	19285247	19285247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MAPK7	NM_002749	exon5	c.G1631A	p.G544E	AACGGGGGGCTGG	.	16.0	12.0	27.0	0.0	.	1402
MED15	51586	hgsc.bcm.edu;bcgsc.ca	37	22	20939289	20939289	+	Missense_Mutation	SNP	G	G	T	rs147995933	alternate_allele	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MED15	NM_001003891	exon15	c.G1951T	p.G651C	ATTCACGGCCCAC	.	75.0	4.0	78.0	0.0	G|1.000;A|0.000	211
MEX3A	92312	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156051766	156051766	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MEX3A	NM_001093725	exon1	c.A24G	p.G8G	CATTATTCCAGAT	.	187.0	56.0	164.0	1.0	.	158
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9033614	9033614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MUC16	NM_024690	exon9	c.G36323A	p.G12108D	ACCAGACCCTGCA	.	216.0	28.0	167.0	1.0	.	566
MUC4	4585	broad.mit.edu;mdanderson.org	37	3	195512355	195512355	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MUC4	NM_018406	exon2	c.G6096A	p.P2032P	AGGAAGCGGCGTG	.	674.0	59.0	634.0	1.0	.	90
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128366325	128366325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MYO7B	NM_001080527	exon22	c.G2686A	p.A896T	CAAGGCGCTCTCC	.	146.0	48.0	149.0	0.0	.	47
PDE7B	27115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	136268612	136268612	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	PDE7B	NM_018945	exon2	c.32delA	p.E11fs	GTGGCGAAATCTT	.	82.0	56.0	128.0	0.0	.	91
PODNL1	79883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14046601	14046601	+	Missense_Mutation	SNP	C	C	T	rs147712582	byfrequency	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	PODNL1	NM_024825	exon5	c.G448A	p.A150T	GATCCGCGACACG	.	57.0	24.0	84.0	1.0	C|1.000;T|0.000	90
RASSF4	83937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45486412	45486412	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	RASSF4	NM_032023	exon9	c.A702G	p.K234K	ATTAAAAGACTGC	.	41.0	15.0	35.0	0.0	.	290
RPP40	10799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	4996590	4996590	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	RPP40	NM_006638	exon6	c.A624C	p.K208N	TGCTACTTTTGGC	.	125.0	49.0	94.0	0.0	.	90
S1PR4	8698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3179635	3179635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	S1PR4	NM_003775	exon1	c.C845A	p.A282D	TCTGGGCCCAGGA	.	56.0	31.0	93.0	0.0	.	591
SAMD8	142891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	76910777	76910777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SAMD8	NM_144660	exon2	c.G491T	p.G164V	TATTTGGATTTAC	.	111.0	43.0	147.0	1.0	.	90
SDCBP2	27111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1299029	1299029	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SDCBP2	NM_080489	exon4	c.A158T	p.Y53F	CCCATATAATTTT	.	58.0	20.0	66.0	0.0	.	154
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71437017	71437017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SDK2	NM_001144952	exon6	c.C659T	p.P220L	TTAGGTGGGATGA	.	217.0	63.0	175.0	0.0	.	24
SGSM1	129049	broad.mit.edu;bcgsc.ca	37	22	25246291	25246291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SGSM1	NM_001098497	exon5	c.C347A	p.P116Q	AGCTGCCGAAGCT	.	117.0	36.0	90.0	2.0	.	27
SLC6A2	6530	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55725913	55725913	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SLC6A2	NM_001172501	exon6	c.T867C	p.N289N	CTCCAATGGCATC	.	123.0	52.0	152.0	1.0	.	526
SUCO	51430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172571313	172571313	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	.	NM_014283	exon21	c.A3128T	p.Y1043F	GAGATTATATTTC	.	81.0	28.0	70.0	0.0	.	.
TAS2R39	259285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142881004	142881004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TAS2R39	NM_176881	exon1	c.T493C	p.S165P	TGGCTGTCCGTGT	.	191.0	63.0	156.0	1.0	.	1
THBS3	7059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	155170766	155170766	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	THBS3	NM_007112	exon13	c.1470delG	p.G490fs	TTCCTGCCCAGAG	.	310.0	107.0	242.0	0.0	.	222
THBS3	7059	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	155175006	155175006	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	THBS3	NM_007112	exon3	c.C388T	p.R130X	GACCTCGGAGTCG	.	146.0	59.0	176.0	0.0	.	222
TLX3	30012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	170736726	170736726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TLX3	NM_021025	exon1	c.C357A	p.S119R	CTCCAGCCTTGGC	.	32.0	10.0	61.0	0.0	.	658
TMEM5	10329	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64196151	64196151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TMEM5	NM_014254	exon4	c.G709A	p.V237M	AATGACGTGGATG	.	91.0	24.0	76.0	1.0	.	90
TNRC18	84629	hgsc.bcm.edu;bcgsc.ca	37	7	5353127	5353127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TNRC18	NM_001080495	exon27	c.C7395A	p.D2465E	CTCGTGGTCCAGT	.	69.0	4.0	92.0	0.0	.	46
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135692416	135692416	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	.	NM_001167576	exon2	c.C660T	p.N220N	GTAGGCGTTCATG	.	238.0	103.0	235.0	1.0	.	.
TRPM2	7226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45810827	45810827	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TRPM2	NM_003307	exon10	c.C1359G	p.D453E	CTGGGACCACCAG	.	132.0	53.0	106.0	0.0	.	92
USP38	84640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	144134995	144134995	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	USP38	NM_032557	exon9	c.T1866C	p.P622P	TTGTCCTTCCTCT	.	144.0	57.0	103.0	0.0	.	660
ZNF804B	219578	bcgsc.ca;mdanderson.org	37	7	88965873	88965873	+	Missense_Mutation	SNP	T	T	A	rs147794726	byfrequency;alternate_allele	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	ZNF804B	NM_181646	exon4	c.T3577A	p.S1193T	CCGGCCTCAACCG	.	359.0	21.0	250.0	2.0	T|0.989;C|0.011	101