Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA2	20	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139916820	139916820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ABCA2	NM_212533	exon6	c.C640T	p.R214C	CCACACGGGCGGC	.	58.0	17.0	73.0	0.0	.	90
ABCG2	9429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	89039368	89039368	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ABCG2	NM_004827	exon7	c.C734G	p.P245R	TATCGAGGCTGAT	.	120.0	49.0	188.0	0.0	.	90
ADAMTSL5	339366	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1506875	1506875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ADAMTSL5	NM_213604	exon10	c.G905A	p.R302Q	CGCTCCCGAGGGA	.	87.0	34.0	99.0	1.0	.	90
AHCYL1	10768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110560140	110560140	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	AHCYL1	NM_006621	exon10	c.T987A	p.A329A	TGCTGCTCTCAAA	.	92.0	28.0	152.0	0.0	.	91
ARHGAP44	9912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12852526	12852526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ARHGAP44	NM_014859	exon11	c.G931A	p.V311M	TGCGTGGTGGATG	.	65.0	25.0	72.0	0.0	.	90
ARID3C	138715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34622422	34622422	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ARID3C	NM_001017363	exon5	c.G970C	p.V324L	TCAGCACAGCTCT	.	65.0	17.0	99.0	0.0	.	91
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	101296578	101296578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ASCC3	NM_006828	exon4	c.A247G	p.T83A	TATCAGTTCCAAC	.	35.0	16.0	40.0	0.0	.	96
ATP10A	57194	ucsc.edu;bcgsc.ca	37	15	25924907	25924907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ATP10A	NM_024490	exon21	c.G4081A	p.V1361I	AGCAGACCGGCTG	.	35.0	4.0	56.0	0.0	.	139
BACE2	25825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	42617961	42617961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BACE2	NM_138992	exon6	c.G955A	p.V319M	GATGCGGTGGTGG	.	138.0	51.0	155.0	0.0	.	92
BAHCC1	57597	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79414175	79414175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BAHCC1	.	.	.	.	CCGGGGGCCCAGC	.	38.0	16.0	50.0	0.0	.	23
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	70751716	70751716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BDP1	NM_018429	exon1	c.G12T	p.R4S	CCGCAGGGCACGC	.	44.0	20.0	69.0	0.0	.	92
BLM	641	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91346865	91346865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BLM	NM_000057	exon18	c.A3473G	p.D1158G	ATGAAGACTTATA	.	125.0	38.0	177.0	1.0	.	664
BPI	671	ucsc.edu;bcgsc.ca	37	20	36937389	36937389	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	BPI	NM_001725	exon3	c.G315T	p.V105V	CAATGTGGGCCTT	.	279.0	118.0	323.0	2.0	.	94
C10orf71	118461	hgsc.bcm.edu;bcgsc.ca	37	10	50533616	50533616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C10orf71	NM_001135196	exon3	c.G3026A	p.G1009D	CCGAGGGTGACAT	.	240.0	98.0	341.0	0.0	.	90
C11orf1	64776	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111753099	111753099	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C11orf1	NM_022761	exon2	c.A53T	p.N18I	GACAGAACCTCGC	.	119.0	40.0	213.0	1.0	.	90
C1orf127	148345	hgsc.bcm.edu;broad.mit.edu	37	1	11008624	11008624	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C1orf127	NM_001170754	exon12	c.1568delC	p.P523fs	GGCCTCGGGGCTG	.	131.0	10.0	170.0	0.0	.	91
C1orf168	199920	ucsc.edu;bcgsc.ca	37	1	57258345	57258345	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C1orf168	NM_001004303	exon2	c.A141T	p.Q47H	CAAAATTTGAGTT	.	143.0	48.0	200.0	2.0	.	95
C6orf62	81688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24714570	24714570	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C6orf62	NM_030939	exon3	c.T405C	p.S135S	CTCATCAGATTCT	.	98.0	27.0	168.0	0.0	.	90
C9orf72	203228	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27566949	27566949	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	C9orf72	NM_018325	exon2	c.G170C	p.G57A	ATTTCTCCATCAC	.	162.0	66.0	204.0	1.0	.	517
CASQ1	844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160165717	160165717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	CASQ1,brain,glioma,-1	CASQ1	NM_001231	exon6	c.G682A	p.E228K	CTGAATGAGATTG	.	177.0	27.0	135.0	0.0	.	90
CCDC132	55610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92935245	92935245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CCDC132	NM_017667	exon18	c.G1558A	p.G520S	TGTAGTGGTGGGA	.	163.0	57.0	239.0	0.0	.	90
CCDC63	160762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111342552	111342552	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CCDC63	NM_152591	exon11	c.C1503T	p.P501P	CATCCCCCCAGTG	.	118.0	40.0	173.0	0.0	.	134
CD46	4179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207940538	207940538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CD46	NM_172352	exon6	c.A854C	p.K285T	GTCTTAAAGGTAC	.	325.0	137.0	239.0	0.0	.	963
CDK5R1	8851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30814788	30814788	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CDK5R1	NM_003885	exon2	c.G150A	p.L50L	CGTGCTGCCTTGG	.	252.0	87.0	337.0	0.0	.	651
CHAT	1103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50857589	50857589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CHAT	NM_020549	exon10	c.C1418A	p.S473Y	CAGACTCCGTCAG	.	162.0	79.0	187.0	0.0	.	514
CILP2	148113	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	19655986	19655986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CILP2	NM_153221	exon8	c.G2632A	p.V878M	GGGCCTGTGTACC	.	15.0	8.0	15.0	1.0	.	91
CIRBP	1153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1271158	1271158	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CIRBP	NM_001280	exon3	c.G123C	p.R41S	AGACAGGGAGACC	.	264.0	82.0	396.0	0.0	.	226
COL6A5	256076	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130098358	130098358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_153264	exon4	c.G765T	p.Q255H	TCTTCAGACCTTC	.	113.0	56.0	143.0	1.0	.	.
CRB1	23418	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	197316508	197316508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CRB1	NM_001257966	exon4	c.C887T	p.T296I	CAGGGACACACTG	.	243.0	41.0	162.0	2.0	.	161
CRISP3	10321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49698949	49698949	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CRISP3	NM_001190986	exon7	c.T606C	p.N202N	TAGTCTATTAGCC	.	221.0	91.0	258.0	0.0	.	92
CSNK1G1	53944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	64508895	64508895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	CSNK1G1	NM_022048	exon5	c.G310A	p.V104M	AATACACCTGTGG	.	150.0	64.0	237.0	0.0	.	319
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	T	rs28931588	bycluster	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G94T	p.D32Y	TACCTGGACTCTG	.	301.0	109.0	355.0	1.0	G|1.000;T|0.000	24361
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	125685361	125685361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DCAF12L1	NM_178470	exon1	c.C1231T	p.L411F	GGTTGAGCCAGCC	.	281.0	132.0	218.0	1.0	.	132
DCAF5	8816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69522154	69522154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DCAF5	NM_003861	exon9	c.G1249T	p.A417S	AGAAGGCCATCAT	.	117.0	54.0	167.0	0.0	.	91
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	31586176	31586176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DENND5B	NM_144973	exon8	c.G2019T	p.W673C	ACTTACCCAGCGA	.	86.0	33.0	100.0	0.0	.	24
DHX34	9704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47861354	47861354	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DHX34	NM_014681	exon4	c.C1249T	p.L417L	AGCGCCCTGTCTG	.	39.0	16.0	50.0	0.0	.	231
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52360896	52360896	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DNAH1	NM_015512	exon5	c.C727G	p.L243V	ATCTACCTCCCAC	.	228.0	60.0	325.0	0.0	.	67
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7726895	7726895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DNAH2	NM_020877	exon73	c.G11278T	p.D3760Y	CCTCGTGACTGGC	.	214.0	83.0	244.0	0.0	.	102
DNAI2	64446	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	72281284	72281284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DNAI2	NM_001172810	exon3	c.C289T	p.R97W	CGTTTCCGGAAGA	.	138.0	7.0	204.0	0.0	.	92
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	111634195	111634195	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DOCK4	NM_014705	exon5	c.T310A	p.Y104N	CCACATAGAGTTG	.	61.0	17.0	94.0	0.0	.	26
DUSP1	1843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	172197268	172197268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	DUSP1	NM_004417	exon2	c.A409C	p.S137R	GTTTGCTGCACAG	.	202.0	79.0	281.0	1.0	.	659
ETFB	2109	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51857606	51857606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ETFB	NM_001014763	exon1	c.G287A	p.C96Y	AACAGGCAAGAAG	.	42.0	18.0	99.0	1.0	.	90
FAM192A	80011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57197926	57197926	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAM192A	NM_024946	exon6	c.T534A	p.D178E	CTTGTCATCTGGC	.	168.0	67.0	228.0	0.0	.	90
FAM46D	169966	ucsc.edu;bcgsc.ca	37	X	79698052	79698052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAM46D	NM_001170574	exon5	c.G14A	p.R5K	AAATCAGATTCAC	.	238.0	212.0	203.0	2.0	.	130
FAM76B	143684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	95522613	95522613	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAM76B	NM_144664	exon1	c.C30A	p.T10T	ACACTTGGTGCAG	.	70.0	28.0	57.0	0.0	.	90
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150911280	150911280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	FAT2	NM_001447	exon13	c.G9679T	p.V3227L	CGGGCACCTGCAC	.	14.0	9.0	21.0	0.0	.	96
GAL	51083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68458398	68458398	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GAL	NM_015973	exon6	c.C315G	p.L105L	TGCCCTCGACCGC	.	55.0	19.0	94.0	0.0	.	90
GLTSCR1L	23506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42832697	42832697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_015349	exon12	c.C2753A	p.S918Y	GCACGTCTGAAGA	.	78.0	32.0	77.0	0.0	.	.
GLYATL2	219970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58607044	58607044	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GLYATL2	NM_145016	exon2	c.T42C	p.Y14Y	GGATTTATACAGA	.	88.0	38.0	166.0	0.0	.	92
GPR148	344561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131486786	131486786	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GPR148	NM_207364	exon1	c.T62A	p.L21H	TCCAGCTCATCAG	.	317.0	110.0	377.0	0.0	.	91
GRXCR1	389207	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42965023	42965023	+	Missense_Mutation	SNP	C	C	A	rs192948915	alternate_allele	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	GRXCR1	NM_001080476	exon2	c.C499A	p.R167S	AACCATCGCGTAA	.	90.0	44.0	133.0	2.0	C|0.999;T|0.000	23
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240056082	240056082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HDAC4	NM_006037	exon11	c.C1153T	p.L385F	GGGAGAGCCTCTG	.	28.0	11.0	51.0	0.0	.	291
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37256043	37256043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HEATR5B	NM_019024	exon23	c.G3382A	p.G1128R	TAACCCCAGGGGC	.	109.0	53.0	118.0	0.0	.	142
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28491165	28491165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HERC2	NM_004667	exon23	c.A3439G	p.K1147E	CATTTTTACTGAG	.	110.0	46.0	123.0	0.0	.	234
HTRA4	203100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38831805	38831805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HTRA4	NM_153692	exon1	c.C23T	p.T8I	TGCGGACCGCGGG	.	73.0	32.0	103.0	0.0	.	90
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70896085	70896085	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	HYDIN	NM_001270974	exon69	c.C11643G	p.H3881Q	GGCCCAGTGGTCC	.	111.0	40.0	184.0	0.0	.	92
IL1RAPL2	26280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105011411	105011411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	IL1RAPL2,NS,carcinoma,0	IL1RAPL2	NM_017416	exon11	c.C1818A	p.F606L	TGAATTCCACCCT	.	260.0	225.0	201.0	0.0	.	194
INSL6	11172	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	5164195	5164195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	INSL6	NM_007179	exon2	c.G360T	p.K120N	ATATCCCTTTTTA	.	43.0	13.0	54.0	0.0	.	90
INTS8	55656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95892419	95892419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	INTS8	NM_017864	exon27	c.G2945A	p.R982K	AGAGAAGGAAAAA	.	166.0	38.0	146.0	0.0	.	90
IPO13	9670	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44424562	44424562	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	IPO13	NM_014652	exon11	c.2028+1G>A	.	AACCCCGTGGGTG	.	130.0	45.0	192.0	2.0	.	226
ITSN1	6453	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	35166772	35166772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ITSN1	NM_001001132	exon17	c.G1952T	p.R651I	CCCAAAGGTGAGT	.	134.0	46.0	178.0	1.0	.	94
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139824552	139824552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	JHDM1D	NM_030647	exon7	c.C920T	p.T307I	TCATCTGTTGGCT	.	65.0	20.0	91.0	0.0	.	91
JPH2	57158	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42788302	42788302	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	JPH2	NM_020433	exon2	c.C1125G	p.R375R	AGCGGCGCGCTGG	.	18.0	4.0	21.0	0.0	.	91
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	73480055	73480055	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	KCNB2	NM_004770	exon2	c.86delG	p.R29fs	TTATCCGGAGCAA	.	155.0	85.0	147.0	0.0	.	158
KIF18A	81930	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	28116256	28116256	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	KIF18A	NM_031217	exon3	c.C417T	p.H139H	GTAAAGGTGTAAC	.	150.0	51.0	262.0	2.0	.	92
KLHL6	89857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183217548	183217548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	KLHL6	NM_130446	exon4	c.G977T	p.G326V	GTGCAGCCGCCAA	.	126.0	46.0	141.0	2.0	.	93
L1CAM	3897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153129931	153129931	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	L1CAM	NM_000425	exon24	c.A3168G	p.E1056E	CTTCTCTTCTGCC	.	90.0	44.0	98.0	0.0	.	138
LBR	3930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225594411	225594411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LBR	NM_194442	exon11	c.A1438T	p.N480Y	CTTCATTTGGATG	.	294.0	123.0	205.0	0.0	.	228
LEF1	51176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	109084858	109084858	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LEF1	NM_016269	exon4	c.281-1G>A	.	GCTTTCCTGGGAA	.	90.0	26.0	165.0	0.0	.	721
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96342142	96342142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LNPEP	NM_005575	exon11	c.A1958G	p.H653R	TGTGGCATATTCC	.	173.0	59.0	228.0	0.0	.	229
LTBP4	8425	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	41133674	41133674	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LTBP4	.	.	.	.	CTGCACCAACGGC	.	16.0	11.0	14.0	0.0	.	93
LYAR	55646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4283593	4283593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	LYAR	NM_017816	exon4	c.A154G	p.I52V	CACTTATGCATTT	.	188.0	82.0	214.0	0.0	.	90
MAST1	22983	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12969450	12969450	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MAST1	NM_014975	exon12	c.G1263A	p.V421V	CTTTGTGGAGCGC	.	160.0	62.0	169.0	1.0	.	523
MCM4	4173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48874204	48874204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MCM4	NM_182746	exon3	c.G199A	p.V67M	CAGGACGTGCTGT	.	126.0	55.0	131.0	0.0	.	230
MRAP2	112609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	84798909	84798909	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MRAP2	NM_138409	exon4	c.C327G	p.N109K	AGGCAACGAGGAG	.	107.0	40.0	153.0	0.0	.	92
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9085930	9085930	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MUC16	NM_024690	exon1	c.T5885A	p.M1962K	TGTGTCATGGGTG	.	186.0	62.0	280.0	1.0	.	566
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76595796	76595796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MYO6	NM_004999	exon24	c.G2492A	p.R831K	GCAAGAGGAGACA	.	113.0	50.0	180.0	0.0	.	92
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	72189982	72189982	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	MYO9A	NM_006901	exon25	c.C4862G	p.S1621C	GTCTTGGATAATT	.	264.0	115.0	285.0	1.0	.	93
NACAD	23148	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45124284	45124284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_001146334	exon2	c.G1495C	p.A499P	TGGTAGCCACCTC	.	84.0	27.0	126.0	2.0	.	.
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	133540419	133540419	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_207363	exon14	c.C3965G	p.S1322C	TTGGGAGAGCTTT	.	172.0	10.0	198.0	1.0	.	.
NPAP1	23742	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	24923341	24923341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_018958	exon1	c.C2327A	p.A776D	TTGGGGCCCCTGA	.	56.0	22.0	73.0	1.0	.	.
NRG3	10718	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	83635708	83635708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	NRG3	NM_001165972	exon1	c.C612A	p.S204R	TAGCAGCACGCTG	.	75.0	33.0	99.0	1.0	.	522
NXPH4	11247	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57618996	57618996	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	NXPH4	NM_007224	exon2	c.T393C	p.H131H	GGACCATGTGAAC	.	59.0	15.0	62.0	1.0	.	68
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228451986	228451986	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OBSCN	NM_001271223	exon18	c.G5307T	p.V1769V	GGCCGTGGGCTGC	.	161.0	86.0	138.0	0.0	.	403
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228467000	228467000	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OBSCN	NM_001271223	exon32	c.G8538T	p.T2846T	GAAGACGGTGTTG	.	182.0	37.0	158.0	0.0	.	403
OR2L5	81466	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	248185795	248185795	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_001258284	exon1	c.T546A	p.A182A	TCCAGCTATGTTG	.	510.0	112.0	369.0	0.0	.	.
OR2T34	127068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248737387	248737387	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OR2T34	NM_001001821	exon1	c.C672G	p.T224T	GATGAGGGTGTAT	.	703.0	164.0	576.0	1.0	.	69
OR2T6	254879	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248551789	248551789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OR2T6	NM_001005471	exon1	c.A880G	p.N294D	CTGAGGAACAGGG	.	397.0	76.0	374.0	2.0	.	71
OR51L1	119682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5021109	5021109	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OR51L1	NM_001004755	exon1	c.G897A	p.K299K	AACAAAGCAGATT	.	95.0	40.0	153.0	0.0	.	69
OR6N2	81442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158746653	158746653	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	OR6N2	NM_001005278	exon1	c.T773A	p.M258K	ACATACATGAAGA	.	507.0	132.0	337.0	0.0	.	68
PARP11	57097	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	3931251	3931251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PARP11	NM_020367	exon5	c.G417T	p.Q139H	TCTTACCTGATAT	.	82.0	37.0	104.0	1.0	.	523
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	58298754	58298754	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PCDH17	NM_001040429	exon4	c.G2806T	p.E936X	CCAGAAGAGTGTG	.	94.0	40.0	92.0	0.0	.	97
PCDHA13	56136	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	5	140264081	140264081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PCDHA13	NM_031865	exon1	c.G2228T	p.S743I	GCTCCAGCGCGGC	.	46.0	14.0	64.0	0.0	.	75
PCDHA5	56143	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140201921	140201921	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PCDHA5	NM_018908	exon1	c.A561C	p.E187D	AGAAGAAACGAAC	.	66.0	28.0	91.0	1.0	.	137
PDIA4	9601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	148703056	148703056	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PDIA4	NM_004911	exon8	c.G1221A	p.K407K	GTAGCGCTTAGCA	.	65.0	21.0	99.0	0.0	.	524
PHEX	5251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	22117127	22117127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PHEX	NM_000444	exon9	c.G937A	p.D313N	CAGTTCGACTGGC	.	34.0	21.0	31.0	0.0	.	132
PHF8	23133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54022132	54022132	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PHF8	NM_001184896	exon12	c.G1425A	p.L475L	TTCCACCAGGCGG	.	33.0	24.0	80.0	0.0	.	133
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47930177	47930177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PKD1L1	NM_138295	exon16	c.C2638T	p.R880W	ACACCCGGGTCTC	.	92.0	34.0	87.0	0.0	.	145
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110393732	110393732	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PKHD1L1	NM_177531	exon3	c.A297G	p.T99T	AATTACATGCTAT	.	75.0	18.0	77.0	0.0	.	145
PKP1	5317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201282409	201282409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PKP1	NM_001005337	exon3	c.G422T	p.G141V	GCGCAGGCAGCGA	.	328.0	137.0	265.0	1.0	.	92
PLCG2	5336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81925146	81925146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PLCG2	NM_002661	exon11	c.G937A	p.D313N	ATGCAGGACATGA	.	239.0	81.0	335.0	0.0	.	892
PLEKHH2	130271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	43980783	43980783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PLEKHH2	NM_172069	exon25	c.G3679A	p.G1227R	GCTCGTGGAGAGA	.	134.0	49.0	164.0	0.0	.	92
POM121L12	285877	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	7	53103689	53103689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_182595	exon1	c.G325T	p.G109W	GCTCTGGGGCGAG	.	17.0	6.0	19.0	0.0	.	.
POR	5447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75615486	75615486	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	POR	NM_000941	exon15	c.C1825G	p.Q609E	TACGTCCAGCACC	.	151.0	55.0	189.0	0.0	.	23
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69032483	69032483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PREX2	NM_024870	exon29	c.A3557G	p.D1186G	CCTTTGACCAAAC	.	111.0	51.0	121.0	0.0	.	390
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48697806	48697806	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PRKDC	.	.	.	.	CGTTGAAGTCACT	.	77.0	34.0	112.0	0.0	.	1515
PRRC2B	84726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	134351321	134351322	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	PRRC2B	NM_013318	exon15	c.3805_3806insG	p.R1269fs	GGTGGCCGGGGCT	.	73.0	25.0	95.0	0.0	.	24
RBFOX1	54715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	7568314	7568314	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	RBFOX1	NM_145891	exon2	c.C253T	p.L85L	TTAAACCTGTACC	.	91.0	39.0	113.0	0.0	.	92
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78688976	78688976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ROBO1	NM_002941	exon22	c.C2955A	p.N985K	GTGGTTGTTGCCA	.	123.0	48.0	150.0	0.0	.	67
RPE65	6121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68910330	68910330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	RPE65	NM_000329	exon5	c.G379A	p.E127K	TAACCTCTACTCC	.	73.0	22.0	119.0	0.0	.	91
RXRG	6258	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	165386378	165386378	+	Silent	SNP	C	C	A	rs200365240	alternate_allele	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	RXRG	NM_006917	exon4	c.G522T	p.T174T	CCGACACGTGTAG	.	452.0	91.0	340.0	1.0	C|0.999;T|0.001	186
SACS	26278	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23907796	23907796	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SACS	NM_014363	exon10	c.C10219T	p.L3407L	ACTTTAGAATTTT	.	58.0	19.0	68.0	1.0	.	298
SDHAF2	54949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	61197634	61197634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SDHAF2	NM_017841	exon1	c.G16T	p.V6L	TCTACAGTGTTCT	.	58.0	12.0	91.0	0.0	.	92
SEMA3A	10371	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	83610674	83610674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SEMA3A	NM_006080	exon14	c.G1615T	p.G539C	CAGAACCATCCCA	.	160.0	50.0	256.0	1.0	.	156
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50376662	50376662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SHROOM4	NM_020717	exon4	c.C2411T	p.P804L	GGTTTTGGTCTCT	.	91.0	72.0	114.0	0.0	.	131
SKIDA1	387640	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	21805067	21805067	+	Missense_Mutation	SNP	T	T	C	rs199700139		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_207371	exon4	c.A1685G	p.N562S	ACAGCATTGGAAA	.	72.0	26.0	133.0	1.0	.	.
SLC7A13	157724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	87229802	87229802	+	Nonsense_Mutation	SNP	A	A	T	rs201235225	alternate_allele	TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SLC7A13	NM_138817	exon3	c.T1076A	p.L359X	TTTATCAAATCAA	.	99.0	29.0	97.0	0.0	A|0.999;G|0.001	90
SLC9B1	150159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	103912818	103912818	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	.	NM_001100874	exon2	c.A51G	p.Q17Q	AGATGTTTGGAAG	.	19.0	9.0	18.0	0.0	.	.
SLCO5A1	81796	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	70591818	70591818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SLCO5A1	NM_030958	exon8	c.C1819T	p.R607C	CTTGGCGACTTTG	.	164.0	41.0	183.0	1.0	.	94
SLIT2	9353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20512134	20512134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	SLIT2,brain,glioma,-2	SLIT2	NM_004787	exon10	c.A931G	p.T311A	CAGAACACAATCA	.	20.0	4.0	41.0	0.0	.	521
SMC5	23137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72879295	72879295	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SMC5	NM_015110	exon2	c.G261T	p.S87S	GAAGTCGAGCATT	.	170.0	69.0	291.0	0.0	.	229
SNCA	6622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90756778	90756778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SNCA	NM_000345	exon2	c.G41A	p.G14E	ACAACTCCCTCCT	.	154.0	60.0	200.0	0.0	.	90
SOLH	6650	ucsc.edu;mdanderson.org	37	16	601376	601376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SOLH	NM_005632	exon8	c.G2141A	p.R714H	GCCTGCGCCCCCG	.	15.0	3.0	35.0	0.0	.	523
SOX21	11166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	95364066	95364066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SOX21	NM_007084	exon1	c.C238T	p.R80W	TGCGCCGCGGCCG	.	154.0	63.0	164.0	0.0	.	514
SPAG6	9576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	22675715	22675715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPAG6	NM_172242	exon5	c.G505T	p.V169F	GGAGCTGTTCCTC	.	101.0	26.0	140.0	0.0	.	153
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24864810	24864810	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPATA13	NM_001166271	exon9	c.T2868C	p.Y956Y	CATCTATTCCGAG	.	185.0	78.0	276.0	0.0	.	229
SPHKAP	80309	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	228881311	228881311	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPHKAP	NM_030623	exon7	c.C4259A	p.S1420X	CAAAGTGATCGCC	.	117.0	48.0	150.0	1.0	.	167
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158604337	158604337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPTA1	NM_003126	exon39	c.C5561T	p.T1854I	ACCTGAGTAGCAG	.	134.0	56.0	125.0	0.0	.	142
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65260364	65260364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	SPTB	NM_001024858	exon13	c.C2017T	p.L673F	AGATGAGCACACT	.	183.0	77.0	244.0	0.0	.	100
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	29994582	29994582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TAOK2	NM_004783	exon12	c.C1189T	p.R397W	GAAGCCCGGGAGA	.	54.0	22.0	60.0	0.0	.	521
TBL3	10607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2026901	2026901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TBL3	NM_006453	exon14	c.C1379T	p.T460I	AGAACACAGCCCC	.	113.0	38.0	195.0	0.0	.	90
TEKT3	64518	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	15234365	15234365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TEKT3	NM_031898	exon3	c.A538G	p.R180G	CCAGTCTTTTCTT	.	93.0	34.0	94.0	1.0	.	92
TELO2	9894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	1545384	1545384	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TELO2	NM_016111	exon3	c.G373C	p.A125P	CTGCTGGCCAGAT	.	14.0	7.0	19.0	0.0	.	90
TMEM71	137835	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133769495	133769495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	TMEM71	NM_144649	exon3	c.C86T	p.T29M	ATGCACGTGGGAG	.	129.0	37.0	154.0	1.0	.	92
UNC80	285175	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	210841642	210841642	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	UNC80	NM_032504	exon57	c.G8580A	p.L2860L	GCTGCTGGCCCAA	.	125.0	40.0	153.0	2.0	.	90
USPL1	10208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	31205167	31205167	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	USPL1	NM_005800	exon4	c.A424T	p.N142Y	AAACATAATGGAG	.	67.0	22.0	70.0	0.0	.	524
WWC2	80014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	184182073	184182073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	WWC2	NM_024949	exon11	c.A1297G	p.S433G	TCTGCCAGCACCC	.	81.0	33.0	97.0	0.0	.	93
ZNF37A	7587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	38406925	38406925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ZNF37A	NM_003421	exon7	c.G846T	p.Q282H	CACCCAGAAGTCA	.	33.0	11.0	57.0	0.0	.	90
ZNF423	23090	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	49671538	49671538	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ZNF423	NM_015069	exon4	c.A1525C	p.N509H	AGGGGTTGGCGTT	.	84.0	32.0	110.0	1.0	.	228
ZNF440	126070	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11942559	11942559	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ZNF440	NM_152357	exon4	c.C568G	p.H190D	CGAAGACACATGG	.	176.0	78.0	226.0	2.0	.	68
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22362974	22362974	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NF-01A-11D-A27I-10	TCGA-DD-A4NF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	22ec33a5-0591-489b-acaa-9a7dae5f9f59	b191ad27-9a0d-4b6e-9e4f-b019a8aa53be	.	ZNF676	NM_001001411	exon3	c.C1545G	p.S515R	GGACCAGCTGAAG	.	27.0	13.0	26.0	0.0	.	90