Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ADAM19 8728 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 156918883 156918885 + In_Frame_Del DEL AAG AAG - novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 AAG AAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . ADAM19 NM_033274 exon17 c.1944_1946del p.648_649del GTTTCAAAGAAGG . 158.0 44.0 209.0 0.0 . 294 AKAP8 10270 broad.mit.edu;mdanderson.org 37 19 15484748 15484748 + Missense_Mutation SNP C C A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . AKAP8 NM_005858 exon4 c.G220T p.A74S GCATGGCAGGGGC . 32.0 9.0 26.0 0.0 . 290 AKT2 208 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 40742001 40742001 + Missense_Mutation SNP T T C novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . AKT2 NM_001626 exon11 c.A971G p.D324G TCATTGTCCTCCA . 86.0 24.0 64.0 0.0 . 978 ANAPC5 51433 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 121783834 121783834 + Frame_Shift_Del DEL C C - novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . ANAPC5 NM_016237 exon4 c.398delG p.G133fs AACAAACCTACAA . 92.0 19.0 125.0 0.0 . 290 ANGPTL1 9068 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 178822882 178822882 + Silent SNP A A G novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . ANGPTL1 NM_004673 exon4 c.T864C p.H288H GACCGAATGCCCA . 112.0 19.0 113.0 0.0 . 90 ANO8 57719 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 17443815 17443815 + Silent SNP G G A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . ANO8 NM_020959 exon5 c.C510T p.R170R CCAGAAGCGGATG . 85.0 29.0 98.0 0.0 . 93 APOB 338 hgsc.bcm.edu;bcgsc.ca 37 2 21229380 21229381 + Frame_Shift_Ins INS - - A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 APOB,back,malignant_melanoma,+2 APOB NM_000384 exon26 c.10360_10361insT p.V3454fs AAGAGACAGTAGG . 181.0 58.0 196.0 0.0 . 175 C11orf63 79864 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 122774639 122774639 + Silent SNP A A G novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . C11orf63 NM_024806 exon3 c.A351G p.Q117Q GCAACAACCAATA . 66.0 24.0 86.0 0.0 . 93 C1RL 51279 ucsc.edu;bcgsc.ca 37 12 7249174 7249174 + Missense_Mutation SNP G G A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . C1RL NM_016546 exon6 c.C1277T p.T426M CTTTGCGTCTCAT . 206.0 73.0 262.0 2.0 . 91 C3 718 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 6693481 6693481 + Missense_Mutation SNP C C A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . C3 NM_000064 exon25 c.G3172T p.A1058S TGAAGGCCAGCTG . 32.0 9.0 39.0 0.0 . 95 C7orf43 55262 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 99754066 99754066 + Missense_Mutation SNP T T A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . C7orf43 NM_018275 exon8 c.A1183T p.N395Y GGAGATTGTTAAG . 313.0 86.0 225.0 1.0 . 90 CACNA1E 777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 181767517 181767517 + Silent SNP G G A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 CACNA1E,NS,carcinoma,0 CACNA1E NM_001205293 exon48 c.G6489A p.P2163P CGTCCCGCCAAAG . 111.0 34.0 89.0 1.0 . 95 CACNA2D4 93589 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 1953666 1953666 + Missense_Mutation SNP C C T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . CACNA2D4 NM_172364 exon25 c.G2372A p.S791N AACACGCTGGCCT . 210.0 75.0 145.0 1.0 . 23 CANX 821 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 179150758 179150758 + Missense_Mutation SNP T T A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . CANX NM_001746 exon12 c.T1496A p.I499N TGGTTATCCTCTT . 103.0 34.0 149.0 1.0 . 90 CCDC30 728621 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 43076659 43076659 + Missense_Mutation SNP G G A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . CCDC30 NM_001080850 exon10 c.G1394A p.S465N TCAAAAGCAACCA . 35.0 9.0 62.0 0.0 . 90 CD1B 910 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158301185 158301185 + Missense_Mutation SNP G G T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . CD1B NM_001764 exon1 c.C29A p.A10D AGAACAGCTAACA . 292.0 62.0 271.0 0.0 . 92 CDNF 441549 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 14862095 14862095 + Missense_Mutation SNP T T C novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . CDNF NM_001029954 exon4 c.A448G p.I150V GCAGGATCTGCTT . 155.0 39.0 93.0 1.0 . 90 CDYL 9425 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 4935914 4935914 + Missense_Mutation SNP G G C novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . CDYL NM_004824 exon3 c.G857C p.R286T CCTACAGATACAG . 251.0 167.0 170.0 1.0 . 90 CENPE 1062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 104066455 104066455 + Missense_Mutation SNP T T C novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . CENPE NM_001813 exon32 c.A4609G p.I1537V GTTTTATATTAAA . 49.0 14.0 52.0 0.0 . 277 CEP290 80184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 88479875 88479875 + Missense_Mutation SNP T T G novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . CEP290 NM_025114 exon34 c.A4378C p.I1460L CCTTAATTTTCCT . 48.0 16.0 47.0 0.0 . 96 CPSF3L 54973 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 1257366 1257366 + Splice_Site SNP T T G novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . CPSF3L . . . . GCTGCCTGCCACA . 151.0 81.0 272.0 0.0 . 90 CTNND2 1501 broad.mit.edu;ucsc.edu 37 5 11117631 11117631 + Nonsense_Mutation SNP A A T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . CTNND2 NM_001332 exon13 c.T2208A p.C736X CCCATCACACTCT . 228.0 72.0 236.0 1.0 . 293 CYP27A1 1593 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 219674376 219674376 + Missense_Mutation SNP C C T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . CYP27A1 NM_000784 exon2 c.C332T p.A111V CCAGTGCCCCGCT . 205.0 73.0 211.0 0.0 . 91 DARC 2532 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 159175737 159175737 + Missense_Mutation SNP A A T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . DARC NM_001122951 exon1 c.A514T p.T172S GGGCTCACTGTGG . 104.0 23.0 92.0 0.0 . 659 DCLRE1C 64421 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 14951131 14951131 + Missense_Mutation SNP C C A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . DCLRE1C NM_001033855 exon14 c.G1355T p.C452F TCTTCACAATCTA . 107.0 31.0 99.0 0.0 . 228 DDX11 1663 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 31249813 31249813 + Missense_Mutation SNP G G A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . DDX11 NM_030653 exon17 c.G1651A p.E551K GCAGACGAGAGTC . 183.0 67.0 164.0 0.0 . 229 DEGS1 8560 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 224377758 224377758 + Missense_Mutation SNP A A T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . DEGS1 NM_003676 exon2 c.A562T p.I188F GAAGTTATCAATA . 89.0 22.0 76.0 1.0 . 90 DKK3 27122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 11987381 11987381 + Missense_Mutation SNP T T A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . DKK3 NM_015881 exon7 c.A805T p.S269C GGCCACTGGCACA . 62.0 19.0 58.0 0.0 . 721 DNHD1 144132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6567458 6567458 + Silent SNP T T C novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . DNHD1 NM_144666 exon21 c.T5289C p.Y1763Y CTTGTATGCCCCA . 116.0 31.0 104.0 0.0 . 24 EHHADH 1962 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 184947229 184947229 + Missense_Mutation SNP T T C novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . EHHADH NM_001966 exon4 c.A454G p.I152V AGGTAATTAAGTC . 106.0 40.0 120.0 0.0 . 93 EPS8L1 54869 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 55598913 55598913 + Silent SNP A A T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . EPS8L1 NM_133180 exon20 c.A2103T p.S701S AGTGTCAGAGCTG . 214.0 67.0 226.0 0.0 . 115 FAM120A 23196 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 96233651 96233652 + Frame_Shift_Ins INS - - T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . FAM120A NM_014612 exon2 c.703_704insT p.I235fs TTTCCTATTTTTG . 161.0 31.0 184.0 0.0 . 90 FLT3 2322 broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 28626760 28626760 + Missense_Mutation SNP T T C novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . FLT3 NM_004119 exon5 c.A536G p.Q179R GCGTCCTGGTTTT . 73.0 36.0 140.0 1.0 . 42117 FRY 10129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 32850640 32850640 + Missense_Mutation SNP G G A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . FRY NM_023037 exon57 c.G8326A p.V2776M TTCAGTGTGTTAG . 82.0 35.0 161.0 0.0 . 142 GAD2 2572 hgsc.bcm.edu;bcgsc.ca 37 10 26505807 26505807 + Silent SNP C C T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . GAD2 NM_000818 exon1 c.C69T p.P23P GAATCCCGGCACA . 59.0 4.0 52.0 0.0 . 515 GADL1 339896 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 3 30819694 30819694 + Nonsense_Mutation SNP C C A rs145224145 alternate_allele TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . GADL1 NM_207359 exon14 c.G1369T p.E457X AGAACTCGGGTCC . 230.0 78.0 298.0 1.0 C|0.999;T|0.000 90 GOLGB1 2804 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 3 121416717 121416717 + Nonsense_Mutation SNP G G A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . GOLGB1 NM_001256486 exon13 c.C2653T p.Q885X AGAGCTGATCCAT . 96.0 29.0 137.0 0.0 . 161 HIPK3 10114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 33308240 33308240 + Missense_Mutation SNP G G A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . HIPK3 NM_001048200 exon2 c.G280A p.V94I ACAAAGGTCATAG . 100.0 31.0 105.0 0.0 . 336 KCNMB3 27094 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 178984440 178984440 + Missense_Mutation SNP C C T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . KCNMB3 NM_171828 exon1 c.G59A p.G20E TACCTCCCCTGGC . 69.0 29.0 87.0 0.0 . 90 KPNA5 3841 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 117019926 117019927 + Frame_Shift_Del DEL AA AA - novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 AA AA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . KPNA5 NM_002269 exon5 c.400_401del p.134_134del TTTGTGAAATTTC . 49.0 23.0 109.0 0.0 . 290 KRT38 8687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39596873 39596873 + Missense_Mutation SNP T T C novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . KRT38 NM_006771 exon1 c.A301G p.N101D GGCCATTCAGGGT . 153.0 70.0 170.0 0.0 . 92 LHCGR 3973 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 48958372 48958372 + Missense_Mutation SNP A A C novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . LHCGR NM_000233 exon2 c.T227G p.I76R ATTTTTATGACCT . 29.0 11.0 31.0 0.0 . 589 LRRN3 54674 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 110764538 110764538 + Frame_Shift_Del DEL A A - novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . LRRN3 NM_018334 exon2 c.1710delA p.R570fs TGCTCGAATACCA . 71.0 20.0 61.0 0.0 . 154 MBOAT2 129642 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 9022691 9022691 + Missense_Mutation SNP C C T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . MBOAT2 NM_138799 exon6 c.G456A p.M152I CCGAAACATCCCT . 153.0 47.0 173.0 1.0 . 90 MEGF8 1954 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 42837807 42837807 + Nonsense_Mutation SNP G G T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . MEGF8 NM_001271938 exon2 c.G238T p.E80X GACACAGAGTGCA . 115.0 35.0 120.0 0.0 . 23 MLXIPL 51085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 73013995 73013995 + Missense_Mutation SNP G G A rs146487355 byfrequency TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . MLXIPL NM_032954 exon8 c.C932T p.P311L ATGGGCGGCTGTG . 85.0 27.0 73.0 0.0 G|0.998;A|0.002 91 MRPS35 60488 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 27908279 27908279 + Missense_Mutation SNP G G A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . MRPS35 NM_021821 exon8 c.G868A p.E290K GAAATTGAAGAGT . 70.0 27.0 120.0 0.0 . 90 MUC5B 727897 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 1267292 1267292 + Missense_Mutation SNP C C A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . . NM_002458 exon31 c.C9182A p.S3061Y CCAAATCCACAGC . 409.0 123.0 397.0 1.0 . . MYT1 4661 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 20 62839434 62839434 + Silent SNP G G A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . MYT1 NM_004535 exon7 c.G885A p.E295E AGAGGAGGAGGAA . 96.0 7.0 89.0 0.0 . 704 MYT1 4661 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 20 62839416 62839416 + Silent SNP G G A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . MYT1 NM_004535 exon7 c.G867A p.E289E GGAGGAGGAGGAA . 80.0 14.0 68.0 0.0 . 704 NBAS 51594 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 15378653 15378653 + Nonsense_Mutation SNP G G C novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . NBAS NM_015909 exon45 c.C5882G p.S1961X GCAAGTGATTTCT . 82.0 35.0 120.0 0.0 . 94 NFS1 9054 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 34263098 34263098 + Missense_Mutation SNP G G A rs200454792 TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . NFS1 NM_021100 exon8 c.C817T p.R273W GGGGCCGGCGACG . 160.0 81.0 131.0 0.0 G|0.999;A|0.000 92 NLGN1 22871 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 173998531 173998531 + Missense_Mutation SNP G G T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . NLGN1 NM_014932 exon7 c.G1910T p.R637I CTTTCAGACCTAC . 157.0 53.0 186.0 0.0 . 231 NOL7 51406 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 13618350 13618350 + Missense_Mutation SNP T T C novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . NOL7 NM_016167 exon5 c.T479C p.V160A TTAAAGTACAAAA . 263.0 60.0 223.0 1.0 . 90 OR5K3 403277 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 98109590 98109590 + Silent SNP G G C novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . OR5K3 NM_001005516 exon1 c.G81C p.L27L TGTTCTGTTTGTG . 218.0 58.0 289.0 0.0 . 68 OTOP1 133060 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 4199475 4199475 + Silent SNP C C A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . OTOP1 NM_177998 exon5 c.G1086T p.G362G CGCAGCCCCCATA . 176.0 54.0 179.0 0.0 . 92 PKD1L2 114780 broad.mit.edu;ucsc.edu;mdanderson.org 37 16 81142804 81142804 + RNA SNP C C T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . PKD1L2 . . . . CCTCCTCGTAGTT . 150.0 41.0 144.0 0.0 . 92 PTPLAD2 401494 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 21008070 21008070 + Missense_Mutation SNP G G A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . PTPLAD2 NM_001010915 exon6 c.C566T p.S189F TAGATGGATAAGT . 81.0 19.0 135.0 1.0 . 91 PTPLAD2 401494 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 21008109 21008109 + Missense_Mutation SNP G G A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . PTPLAD2 NM_001010915 exon6 c.C527T p.S176L CCAAATGATTCAA . 84.0 21.0 133.0 0.0 . 91 RAD1 5810 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 34914910 34914910 + Missense_Mutation SNP T T C novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . RAD1 NM_002853 exon2 c.A88G p.I30V TCAAGATAGTGGA . 255.0 66.0 304.0 1.0 . 227 RASSF8 11228 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 26217450 26217450 + Silent SNP C C A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . RASSF8 NM_007211 exon4 c.C123A p.T41T GTACACCCTTATA . 104.0 32.0 163.0 0.0 . 90 RBL1 5933 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 35683995 35683995 + Missense_Mutation SNP C C T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . RBL1 NM_183404 exon11 c.G1428A p.M476I CTGAACCATTACA . 79.0 39.0 71.0 0.0 . 419 SNRK 54861 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 43381915 43381915 + Missense_Mutation SNP C C G novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . SNRK NM_017719 exon5 c.C868G p.L290V AAAAATCTCTCGG . 217.0 70.0 200.0 0.0 . 815 SNTB1 6641 hgsc.bcm.edu;broad.mit.edu 37 8 121824005 121824005 + Nonsense_Mutation SNP C C A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . SNTB1 NM_021021 exon1 c.G79T p.E27X AAACTTCCAGCAG . 42.0 5.0 19.0 0.0 . 228 SNTG2 54221 hgsc.bcm.edu;broad.mit.edu 37 2 1093900 1093900 + Missense_Mutation SNP C C T rs192264442 alternate_allele TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . SNTG2 NM_018968 exon3 c.C229T p.R77C ACACTCCGCAGAC . 88.0 4.0 116.0 0.0 C|0.998;A|0.002 136 SPTBN1 6711 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 54876897 54876897 + Missense_Mutation SNP T T G novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . SPTBN1 NM_003128 exon26 c.T5348G p.L1783R ATGGCCTCAATGA . 258.0 80.0 279.0 0.0 . 140 ST3GAL6 10402 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 98487331 98487331 + Missense_Mutation SNP A A C novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . ST3GAL6 NM_001271145 exon2 c.A206C p.Y69S TCCTCTATTATGT . 121.0 41.0 188.0 0.0 . 91 SULT6B1 391365 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 37414600 37414600 + Missense_Mutation SNP C C A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . SULT6B1 NM_001032377 exon2 c.G96T p.W32C GAGAATCCAGTTT . 21.0 5.0 39.0 0.0 . 91 TANC2 26115 broad.mit.edu;bcgsc.ca 37 17 61315195 61315196 + Frame_Shift_Ins INS - - A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 - - . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . TANC2 NM_025185 exon6 c.568_569insA p.E190fs TATTCTGAAAATG . 42.0 9.0 55.0 0.0 . 24 TGFB2 7042 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 218609331 218609331 + Silent SNP A A G novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . TGFB2 NM_001135599 exon6 c.A858G p.T286T CTCCACATATACC . 73.0 22.0 66.0 0.0 . 710 THBS1 7057 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 39886581 39886581 + Missense_Mutation SNP G G A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . THBS1 NM_003246 exon21 c.G3445A p.G1149R AGACTAGGGTTGT . 95.0 29.0 108.0 0.0 . 653 TLR9 54106 broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 52256679 52256679 + Missense_Mutation SNP G G T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . TLR9 NM_017442 exon2 c.C1653A p.D551E GCTGAGGTCCAGG . 130.0 49.0 84.0 1.0 . 587 TMIGD1 388364 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 28656378 28656378 + Silent SNP G G A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . TMIGD1 NM_206832 exon3 c.C252T p.S84S AGAGCTGGAATTG . 176.0 47.0 186.0 0.0 . 90 TNXB 7148 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 32063403 32063403 + Missense_Mutation SNP C C T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . TNXB NM_019105 exon3 c.G2227A p.E743K AGTCTTCGCCAGC . 580.0 96.0 300.0 1.0 . 90 TPCN2 219931 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 68854594 68854594 + Silent SNP G G A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . TPCN2 NM_139075 exon24 c.G2100A p.K700K TCACAAGTGGGAC . 69.0 22.0 67.0 0.0 . 90 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179499955 179499955 + Missense_Mutation SNP T T G novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . TTN NM_001267550 exon228 c.A41961C p.E13987D TGAGATTTCTGCA . 119.0 39.0 130.0 0.0 . 636 UBE2N 7334 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 93835657 93835657 + Missense_Mutation SNP C C T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . UBE2N NM_003348 exon1 c.G4A p.A2T GCCCGGCCATCTT . 139.0 57.0 115.0 0.0 . 659 UBQLN3 50613 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 5529136 5529136 + Silent SNP C C A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . UBQLN3 NM_017481 exon2 c.G1653T p.G551G ACCCGTCCCTGCT . 95.0 27.0 89.0 0.0 . 93 UNC119B 84747 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 121151187 121151187 + Missense_Mutation SNP T T G novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . UNC119B NM_001080533 exon2 c.T355G p.S119A TGCGTTTCAGGTA . 151.0 49.0 171.0 0.0 . 69 VAV3 10451 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 108116734 108116734 + Missense_Mutation SNP C C A novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . VAV3 NM_006113 exon26 c.G2437T p.D813Y CCACATCTCCTTT . 137.0 67.0 223.0 2.0 . 1339 WASL 8976 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 123334793 123334793 + Missense_Mutation SNP C C T novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . WASL NM_003941 exon8 c.G802A p.V268I TTTTAACAGCTTC . 100.0 24.0 87.0 0.0 . 90 WEE2 494551 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 141408580 141408580 + Frame_Shift_Del DEL A A - novel TCGA-DD-A4NG-01A-11D-A27I-10 TCGA-DD-A4NG-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 03c88506-d72e-4a44-a34e-a7f0564f1799 2b8a07c1-c041-4779-b4df-4bd6a8128dd8 . WEE2 NM_001105558 exon1 c.22delA p.K8fs ATTGACAAAGAAC . 96.0 50.0 103.0 0.0 . 305