Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ADNP 23394 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 49508933 49508934 + Frame_Shift_Del DEL TT TT - novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 TT TT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . ADNP NM_015339 exon5 c.2317_2318del p.773_773del AAATACTTTGTTA . 202.0 43.0 184.0 0.0 . 92 AKT3 10000 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 243800994 243800994 + Frame_Shift_Del DEL C C - novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . AKT3 NM_001206729 exon6 c.480delG p.G160fs AACTTTCCCAAAA . 59.0 22.0 31.0 0.0 . 1423 ALG3 10195 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 183960448 183960448 + Missense_Mutation SNP G G A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . . NM_005787 exon9 c.C1171T p.L391F CGATGAGCCCCAG . 214.0 30.0 210.0 1.0 . . ANO4 121601 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 101490394 101490394 + Missense_Mutation SNP T T A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . ANO4 NM_178826 exon18 c.T1714A p.S572T AACAGCTCCACAT . 172.0 23.0 127.0 0.0 . 96 ATP10D 57205 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 47517533 47517533 + Missense_Mutation SNP T T C novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . ATP10D NM_020453 exon3 c.T331C p.W111R CTGAACTGGGTAC . 142.0 18.0 180.0 0.0 . 93 BICC1 80114 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 60573612 60573612 + Missense_Mutation SNP G G C rs111922761 byfrequency;alternate_allele TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . BICC1 NM_001080512 exon18 c.G2399C p.R800P TTTCACGGTCCAA . 248.0 45.0 199.0 0.0 G|0.992;A|0.008 72 BMP15 9210 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 50658924 50658924 + Missense_Mutation SNP T T A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . BMP15 NM_005448 exon2 c.T496A p.S166T TTCCCTTCCTCAG . 379.0 56.0 315.0 0.0 . 132 C11orf73 51501 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 86048470 86048470 + Silent SNP A A G novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . C11orf73 NM_016401 exon3 c.A318G p.P106P AACTCCATCTGTT . 155.0 35.0 132.0 0.0 . 90 C1QA 712 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 22965369 22965369 + Missense_Mutation SNP C C A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . C1QA NM_015991 exon3 c.C207A p.D69E AGGAGACCAGGGG . 63.0 10.0 62.0 0.0 . 90 COL7A1 1294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 3 48610139 48610139 + Nonsense_Mutation SNP T T A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . COL7A1 NM_000094 exon87 c.A6865T p.K2289X CTCCTTTAGGTCC . 152.0 19.0 139.0 0.0 . 160 DCBLD2 131566 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 98541530 98541530 + Missense_Mutation SNP G G A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . DCBLD2 NM_080927 exon5 c.C679T p.P227S CATGAGGAATTGT . 298.0 59.0 298.0 1.0 . 92 DNAH7 56171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 196740508 196740508 + Silent SNP G G T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . DNAH7 NM_018897 exon38 c.C6177A p.P2059P CTCAATGGGAGGT . 201.0 44.0 193.0 0.0 . 102 DNASE1L1 1774 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153633194 153633194 + Missense_Mutation SNP T T C novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . DNASE1L1 NM_006730 exon4 c.A286G p.M96V TCTCCATGTAGGT . 293.0 58.0 233.0 0.0 . 554 DTX3 196403 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 58001298 58001298 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . DTX3 NM_178502 exon5 c.C652T p.R218W AATGGGCGGATGC . 407.0 63.0 249.0 0.0 . 1083 DUOX2 50506 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 45391660 45391660 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . DUOX2 NM_014080 exon26 c.G3436A p.A1146T TGACTGCGTGGCC . 92.0 16.0 81.0 0.0 . 95 FRAS1 80144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 79238646 79238646 + Missense_Mutation SNP C C A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . FRAS1 NM_001166133 exon17 c.C1944A p.D648E CTCTGACCATGGA . 93.0 16.0 84.0 0.0 . 68 GPRIN2 9721 broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 46999762 46999762 + Silent SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . GPRIN2 NM_014696 exon3 c.C882T p.A294A CTGTGCCCACCTT . 370.0 24.0 312.0 1.0 . 90 HLA-DMB 3109 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 32904957 32904957 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . HLA-DMB NM_002118 exon3 c.G614A p.R205Q CAGTCCCGAAGGA . 248.0 67.0 167.0 1.0 . 90 HRH3 11255 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 60791450 60791450 + Missense_Mutation SNP G G A rs200015061 TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . HRH3 NM_007232 exon3 c.C950T p.P317L GAGCGCGGCCTCT . 25.0 9.0 32.0 0.0 G|0.999;A|0.001 90 IGSF10 285313 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 151166486 151166486 + Missense_Mutation SNP C C A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . IGSF10 NM_178822 exon4 c.G1283T p.W428L ATTAACCAAGAGG . 81.0 13.0 62.0 0.0 . 102 KBTBD8 84541 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 67054129 67054129 + Missense_Mutation SNP A A T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . KBTBD8 NM_032505 exon3 c.A738T p.E246D GATGGAAGATACC . 53.0 12.0 65.0 0.0 . 587 KIF21B 23046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 200959773 200959773 + Silent SNP C C A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . KIF21B NM_017596 exon19 c.G2766T p.R922R AATGATCCGTCGC . 183.0 20.0 95.0 0.0 . 96 LAMA5 3911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 60887087 60887087 + Missense_Mutation SNP G G A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . LAMA5 NM_005560 exon70 c.C9524T p.S3175F TGCAGGGACACCT . 57.0 16.0 61.0 0.0 . 93 MED27 9442 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 134738510 134738510 + Silent SNP G G A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . MED27 NM_004269 exon7 c.C741T p.T247T GGCAGTGGTGGCA . 180.0 32.0 159.0 0.0 . 69 MPP1 4354 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 154010040 154010040 + Silent SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . MPP1 NM_002436 exon10 c.G984A p.G328G CTCCTTCCCATCT . 361.0 64.0 254.0 0.0 . 132 NLRP7 199713 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 55450802 55450802 + Missense_Mutation SNP C C T rs146205567 alternate_allele TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . NLRP7 NM_001127255 exon4 c.G1385A p.G462D TAGCAGCCTTTGG . 220.0 29.0 162.0 0.0 C|1.000;A|0.000 291 NOTCH2NL 388677 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 145273364 145273364 + Missense_Mutation SNP C C G novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . NOTCH2NL NM_203458 exon3 c.C218G p.S73C TTGTGTCTCGACC . 3638.0 161.0 2643.0 0.0 . 211 OAT 4942 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 126089485 126089485 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . OAT NM_000274 exon9 c.G1083A p.M361I TAGCTTCATGAGT . 144.0 31.0 118.0 0.0 . 68 OR10H1 26539 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 15917988 15917988 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . OR10H1 NM_013940 exon1 c.G860A p.S287N ATGGGGCTGAGGA . 310.0 54.0 304.0 0.0 . 68 PCDHGC5 56097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140869878 140869878 + Silent SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . PCDHGC5 NM_018929 exon1 c.C1071T p.N357N GGCCAACCCTGTC . 151.0 37.0 138.0 0.0 . 25 PGS1 9489 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 76395500 76395500 + Frame_Shift_Del DEL T T - novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . PGS1 NM_024419 exon5 c.583delT p.F195fs TCCCTCTTTCACA . 180.0 46.0 125.0 0.0 . 90 PPAP2C 8612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 288111 288111 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . PPAP2C NM_177543 exon2 c.G176A p.C59Y TCCCCGCAGTAAA . 272.0 38.0 245.0 0.0 . 90 PRIM2 5558 broad.mit.edu;mdanderson.org 37 6 57393119 57393119 + Missense_Mutation SNP T T A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . PRIM2 . . . . CATTCCTACACTA . 30.0 4.0 25.0 0.0 . 227 RBL2 5934 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 16 53524210 53524210 + Missense_Mutation SNP T T C novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . RBL2 NM_005611 exon22 c.T3418C p.X1140R TCCCACTGAGGTT . 106.0 23.0 115.0 0.0 . 841 RIBC1 158787 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 53457369 53457369 + Missense_Mutation SNP G G A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . RIBC1 NM_001031745 exon7 c.G689A p.R230H GTCAGCGCTGTGA . 342.0 60.0 312.0 1.0 . 130 RIMS2 9699 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 104897822 104897822 + Missense_Mutation SNP G G T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . RIMS2 NM_001100117 exon4 c.G995T p.R332L AGTCACGCTACCG . 94.0 12.0 85.0 0.0 . 279 RNF11 26994 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 51702468 51702468 + Missense_Mutation SNP T T A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . RNF11 NM_014372 exon1 c.T40A p.S14T GACATCTCCCTGC . 216.0 44.0 227.0 0.0 . 226 RPL7A 6130 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 136216457 136216457 + Missense_Mutation SNP G G A rs11549070 TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . RPL7A NM_000972 exon3 c.G176A p.R59H GGCCCCGCTATAT . 170.0 43.0 112.0 0.0 . 90 SEZ6L2 26470 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 29889651 29889651 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . SEZ6L2 NM_001243332 exon10 c.G1669A p.V557M CGTGCACGCCCCA . 125.0 34.0 120.0 0.0 . 92 SLC6A3 6531 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 1409893 1409893 + Silent SNP G G A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . SLC6A3 NM_001044 exon10 c.C1341T p.L447L CGTGAAGAGCTCA . 198.0 35.0 169.0 0.0 . 157 SMAD7 4092 broad.mit.edu;mdanderson.org 37 18 46448256 46448256 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . SMAD7 NM_005904 exon4 c.G767A p.G256E CGATCCCCAGGCT . 54.0 10.0 43.0 0.0 . 414 SNED1 25992 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 242004719 242004719 + Silent SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . SNED1 NM_001080437 exon21 c.C2718T p.L906L AGAGCTCTTCCCA . 112.0 13.0 81.0 0.0 . 72 SPAG17 200162 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 118635840 118635840 + Missense_Mutation SNP A A T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . SPAG17 NM_206996 exon8 c.T1112A p.L371H TTAATAAGCTGCA . 173.0 13.0 117.0 0.0 . 158 STAT5B 6777 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 40384099 40384100 + Frame_Shift_Ins INS - - G novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . STAT5B NM_012448 exon2 c.47_48insC p.H16fs ATCTGATGAAGGG . 242.0 48.0 199.0 0.0 . 850 SYVN1 84447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 64900425 64900425 + Missense_Mutation SNP A A C novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . SYVN1 NM_172230 exon4 c.T346G p.F116V AGTGGAAACATTT . 176.0 28.0 154.0 0.0 . 91 TACC2 10579 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 123844727 123844727 + Missense_Mutation SNP G G T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . TACC2 NM_206862 exon4 c.G2712T p.Q904H AAGTCAGCTCCCC . 190.0 35.0 137.0 1.0 . 296 TEK 7010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 27206595 27206595 + Missense_Mutation SNP G G C novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . TEK NM_000459 exon15 c.G2380C p.V794L CCAGCTGTGCAGT . 109.0 12.0 101.0 0.0 . 1584 TMEM218 219854 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 124971201 124971201 + Splice_Site SNP T T A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . TMEM218 NM_001258242 exon5 c.216-2A>T . AGAACCTGGGGTT . 33.0 9.0 38.0 0.0 . 68 TMTC1 83857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 29920979 29920979 + Missense_Mutation SNP G G A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . TMTC1 NM_001193451 exon2 c.C332T p.P111L TAGAATGGGTTCA . 80.0 11.0 77.0 0.0 . 90 TSC2 7249 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 16 2134406 2134406 + Nonsense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . TSC2 NM_000548 exon34 c.C4183T p.Q1395X ACTCTGCAGGACA . 60.0 14.0 84.0 0.0 . 1908 TTC24 164118 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 1 156551507 156551507 + Silent SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . TTC24 NM_001105669 exon2 c.C351T p.G117G ACACGGCGACCAA . 228.0 30.0 136.0 0.0 . 46 TTC40 54777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 134731941 134731941 + Missense_Mutation SNP C C A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . . NM_001200049 exon16 c.G1942T p.D648Y GCAGGTCGGGGCA . 217.0 50.0 225.0 0.0 . . VPS13A 23230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 79983032 79983032 + Missense_Mutation SNP A A C novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . VPS13A NM_001018038 exon62 c.A8533C p.I2845L GAAGTCATAAGAC . 44.0 8.0 44.0 0.0 . 161 ZNF454 285676 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 178391688 178391688 + Missense_Mutation SNP A A G novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . ZNF454 NM_001178089 exon5 c.A283G p.T95A AAATCTACTGTCA . 124.0 37.0 147.0 0.0 . 93 ZNF529 57711 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 37045633 37045633 + Silent SNP A A G novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . ZNF529 NM_001145649 exon5 c.T174C p.S58S CTGAGCAGAATCC . 148.0 35.0 146.0 0.0 . 67 ZNF780B 163131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 40540905 40540905 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . ZNF780B NM_001005851 exon5 c.G1861A p.A621T TGAAGGCCTTGCC . 144.0 26.0 134.0 0.0 . 47